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ntsm Public
This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to di…
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JupiterPlot Public
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJul 18, 2024 -
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SaveOurShip2Experimental Public
Forked from SonicTHI/SaveOurShip2ExperimentalExperimental branch of Save Our Ship 2
C# UpdatedNov 15, 2022 -
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bifrost Public
Forked from pmelsted/bifrostBifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
C++ BSD 2-Clause "Simplified" License UpdatedSep 16, 2020 -
serratus Public
Forked from ababaian/serratusUltra-deep Coronavirus Homology Search
Jupyter Notebook GNU General Public License v3.0 UpdatedMay 14, 2020 -
Symmetric DUST for finding low-complexity regions in DNA sequences
C UpdatedOct 3, 2019 -
spaced-seeds Public
Forked from emreerhan/spaced-seedsScripts to empirically show how spaced seed entropy is related to their sensitivity for homology search.
Python UpdatedMar 7, 2019 -
Example program for efficient multithread producer-consumer I/O with kseq
C++ UpdatedFeb 26, 2019 -
homebrew-bio Public
Forked from brewsci/homebrew-bio🍺🔬 Bioinformatics formulae for the Homebrew and Linuxbrew package managers
Ruby Other UpdatedFeb 21, 2019 -
Toolkit for processing sequences in FASTA/Q formats
C MIT License UpdatedJun 18, 2018 -
compact_vector Public
Forked from gmarcais/compact_vectorBit packed vector of integral values
C++ MIT License UpdatedApr 30, 2018 -
PackedArray Public
Forked from gpakosz/PackedArrayRandom access array of tightly packed unsigned integers
C Other UpdatedApr 6, 2018 -
homebrew-science Public
Forked from ahmadia/homebrew-science🔬 Scientific formulae for the Homebrew package manager
Ruby Other UpdatedDec 31, 2016 -
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post_alea Public
post alea analysis pipeline for allele specific genes and transposible elements
Python UpdatedMar 1, 2015 -
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r_utils Public
Set of personal use utility functions for R bundled into a package
UpdatedNov 18, 2014 -
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stat540_2014 Public
Forked from jennybc/stat540_2014STAT540 Statistical Methods for High Dimensional Biology, January - April 2014
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STAT545A_MovieStats Public
Exploratory analysis of Movie preference data set from http://grouplens.org/datasets/movielens/
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