A Python wrapper around Synology API

Speed up your research with our tool that combines Zotero and Ollama. It lets you use your own language model on your computer. Make your limited time more valuable.

Naver Search Workflow for Alfred (알프레드 네이버 검색/사전/지도 자동완성 워크플로우)

Create cisTarget databases

SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

Single cell perturbation prediction

Python package to perform enrichment analysis from omics data.

A shiny app for metacell analysis

Vignettes for the Python metacells package

Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.

Examples of single-cell genomic analysis accelerated with RAPIDS

CellRank: dynamics from multi-view single-cell data

Code repository for TCAT analyses

Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.

Python library to handle Gene Ontology (GO) terms

Matplotlib style for scientific publications

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

Metacells - Single-cell RNA Sequencing Analysis

A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing

A package to help convert different single-cell data formats to each other

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

Integrative Analyses across 388 human brain samples at single-cell resolution

Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

This is the alpha version of the CellOracle package

scripts and notebooks from sanbomics