COMBINE-lab salmon · Discussions · GitHub

8000 COMBINE-lab salmon · Discussions · GitHub

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Questions about install

liujam2001 started Oct 27, 2023 in General

3
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PIPseq V

ViacheslavZemlianski asked Oct 11, 2024 in Q&A (single-cell specific) · Unanswered

0
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Raise maximum barcode length

kaukrise asked Nov 6, 2019 in Q&A (single-cell specific) · Answered

9
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Detected a *potential* strand bias > 1% in an unstranded protocol

kumarage asked Apr 21, 2024 in Q&A (single-cell specific) · Unanswered

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After using SAMtools to convert bam to fastq, the salmon quantification mapping rate is super low: is it normal?

KOBE24DUNK asked Jan 27, 2024 in Q&A (bulk specific) · Unanswered

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Sampling from the posterior (Gibbs and Bootstrap)

Ray6283 asked Nov 6, 2023 in Q&A (bulk specific) · Unanswered

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Equivalence classes

Ray6283 asked Nov 2, 2023 in Q&A (bulk specific) · Closed · Unanswered

2
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Salmon quantification of isoforms of a single gene

alhbiostat asked May 3, 2023 in Q&A (bulk specific) · Unanswered

1
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Alignment process

David8390 asked Oct 30, 2023 in Q&A (bulk specific) · Unanswered

4
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custom / targeted sequencing panel

CynStr asked Oct 26, 2023 in Q&A (bulk specific) · Unanswered

0
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Fragment Library Types

Ray6283 asked Oct 26, 2023 in Q&A (bulk specific) · Unanswered

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Fragment assignments to transcripts

Ray6283 asked Oct 16, 2023 in FAQ · Closed · Unanswered

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Equivalence class file

Ray6283 asked Oct 11, 2023 in Q&A (bulk specific) · Answered

13
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using composite transcriptome

dannynielsen0 started Oct 19, 2023 in General

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salmon alignment mode

aswathysheena asked Oct 16, 2023 in Q&A (bulk specific) · Unanswered

6
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Fragment assignments to transcripts

Ray6283 asked Oct 17, 2023 in Q&A (single-cell specific) · Answered

7
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Fragment-GC bias files

Ray6283 asked Oct 13, 2023 in Q&A (bulk specific) · Unanswered

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Fragment-GC bias files

Ray6283 asked Oct 13, 2023 in Q&A (bulk specific) · Closed · Unanswered

1
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Equivalenece classe file

Ray6283 started Oct 11, 2023 in General · Closed

1
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Running Salmon - AWS AMI Scaling Groups

ChristopherLeach123 asked Jul 20, 2022 in Q&A (bulk specific) · Unanswered

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Accessing the read-level matrix from Alevin

rob-p asked May 26, 2022 in Q&A (single-cell specific) · Unanswered

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Feature Request: flexible handling of additional single-cell technologies / library types?

wagnerde started Jul 8, 2020 in Ideas

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Old vs New Velocity Tutorial

ACastanza asked Nov 6, 2021 in Q&A (single-cell specific) · Unanswered

2
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Strange shell error when using custom geometry

rob-p asked Mar 9, 2022 in FAQ · Unanswered

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Is there a minimum read count or number of genes for Salmon bias correction?

rob-p asked Feb 17, 2022 in Q&A (bulk specific) · Unanswered

2

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