Stars
This repository implements Spatial Graph Attention Network (sGAT), a graph deep learning model that embeds node and edge attributes as well as spatial structures for prediction tasks.
links to conference publications in graph-based deep learning
RF Regressor to determine most important features.
Particle swarm optimization (PSO) that supports constraints
Xml_file parser for the drugbank data.
Don't worry about DrugBank licensing - write code that knows how to download it automatically
drugbank相关数据的处理,包括获取药物sdf结构文件,drug相关信息,drug作用相关蛋白信息,drugbank中drug id与其他数据库的映射,protein蛋白相关信息到其他数据库的映射
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Converting Harmonizome Python scripts into Appyters
🍀 Pytorch implementation of various Attention Mechanisms, MLP, Re-parameter, Convolution, which is helpful to further understand papers.⭐⭐⭐
APRILE: A python library for exploring Adverse Polypharmacy Reaction using Intelligent Learner and Explainer
TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Effect Prediction (GRL@NeurIPS, 2019)