Abstract
This works deals with the concept of mean when applied to 2D or 3D shapes and with its applicability to the construction of digital atlases to be used in digital anatomy. Unlike numerical data, there are several possible definitions of the mean of a shape distribution and procedures for its estimation from a sample of shapes. Most popular definitions are based in the distance function or in the coverage function, each with its strengths and limitations. Closely related to the concept of mean shape is the concept of atlas, here understood as a probability or membership map that tells how likely is that a point belongs to a shape drawn from the shape distribution at hand. We devise a procedure to build probabilistic atlases from a sample of similar segmented shapes using information simultaneously from both functions: the distance and the coverage. Applications of the method in digital anatomy are provided as well as experiments to show the advantages of the proposed method regarding state of the art techniques based on the coverage function.
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Bauer, S., Seiler, C., Bardyn, T., Buechler, P., Reyes, M.: Atlas-based segmentation of brain tumor images using a markov random field-based tumor growth model and non-rigid registration. In: Annual Intl. Conf. of the IEEE Engineering in Medicine and Biology Society (EMBC), pp. 4080–4083, September 2010
Dura, E., Domingo, J.: Alternative method for binary shape alignment of non-symmetrical shapes based on minimal enclosing box. Electronics Letters 48(22), 1401–1402 (2012)
Eddelbuettel, D., Francoisloader, R.: Rinside R package: C++ classes to embed R in C++ applications (2014). http://cran.r-project.org/web/packages/RInside
Ibañez, M.V., Schroeder, W., Cates, L.: Insight Software Consortium The ITK Software Guide. http://www.itk.org/ItkSoftwareGuide.pdf
Jankowski, H., Stanberry, L.: Expectations of random sets and their boundaries using oriented distance functions. Journal of Mathematical Imaging and Vision 36, 291–303 (2010)
Johan, H., Li, B., Wei, Y., Iskandarsyah, Y.W.: 3D model alignment based on minimum projection area. The Visual Computer 27(6–8), 565–574 (2011)
Loader, C.: locfit R package: Local regression, likelihood and density estimation (2013). http://cran.r-project.org/web/packages/locfit
Park, H., Bland, P.H., Meyer, C.R.: Construction of an abdominal probabilistic atlas and its application in segmentation. IEEE Transactions on Medical Imaging 22(4), 483–492 (2003)
Pohl, K., Fisher, J., Bouix, S., Shenton, M., et al.: Using the logarithm of odds to define a vector space on probabilistic atlases. Medical Image Analysis 11(5), 465–477 (2007)
Tateyama, T., Okegawa, M., Uetani, M., Tanaka, H., Kohara, S., Han, X., et al.: Efficient shape representation and statistical shape modeling of the liver using spherical harmonic functions (SPHARM). In: 13th Intl. Symp. on Advanced Intelligent Systems (ISIS) Soft Computing and Intelligent Systems (SCIS), pp. 428–431, November 2012
Xiong, W., Ong, S.H., Tian, Q., Guozhen, X., Zhou, J., Liu, J., Venkatash, S.K.: Construction of a linear unbiased diffeomorphic probabilistic liver atlas from CT images. In: 16th IEEE Intl. Conference on Image Processing Image Processing (ICIP), pp. 1773–1776, November 2009
Lötjönen, L., Wolz, R., Koikkalainen, J., Thurfiell, L., et al.: Improved generation of probabilistic atlases for the expectation maximization classification. In: IEEE Intl. Symp. on Biomedical Imaging: From Nano to Macro, pp. 1839–1842 (2011)
Park, H., Hero, A., Bland, P., Kessler, M., Seo, J., Meyer, C.: Construction of Abdominal Probabilistic Atlases and Their Value in Segmentation of Normal Organs in Abdominal CT Scans. IEICE Transactions on Information and Systems E93.D(8), 2291–2301 (2011)
Wolz, R., Chu, C., Misawa, K., Fujiwara, M., Mori, K., Ruecket, D.: Automated Abdominal Multi-Organ Segmentation with Subject-specific Atlas Generation. IEEE Transactions on Medical Imaging 32(9), 1723–1730 (2013)
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Domingo, J., Dura, E., Ayala, G., Ruiz-España, S. (2015). Means of 2D and 3D Shapes and Their Application in Anatomical Atlas Building. In: Azzopardi, G., Petkov, N. (eds) Computer Analysis of Images and Patterns. CAIP 2015. Lecture Notes in Computer Science(), vol 9256. Springer, Cham. https://doi.org/10.1007/978-3-319-23192-1_44
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DOI: https://doi.org/10.1007/978-3-319-23192-1_44
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