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Sébastien Moretti
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2020 – today
- 2021
- [j17]Sébastien Moretti
, T. Van Du Tran
, Florence Mehl
, Mark Ibberson
, Marco Pagni
:
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models. Nucleic Acids Res. 49(Database-Issue): D570-D574 (2021) - [j16]Frederic B. Bastian
, Julien Roux
, Anne Niknejad
, Aurélie Comte, Sara S. Fonseca Costa
, Tarcisio Mendes de Farias
, Sébastien Moretti
, Gilles Parmentier, Valentine Rech de Laval
, Marta Rosikiewicz
, Julien Wollbrett
, Amina Echchiki
, Angélique Escoriza, Walid H. Gharib
, Mar Gonzales-Porta
, Yohan Jarosz
, Balazs Laurenczy
, Philippe Moret
, Emilie Person, Patrick Roelli
, Komal Sanjeev, Mathieu Seppey
, Marc Robinson-Rechavi
:
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Res. 49(Database-Issue): D831-D847 (2021)
2010 – 2019
- 2019
- [j15]T. Van Du Tran
, Sébastien Moretti, Alix T. Coste, Sara Amorim-Vaz, Dominique Sanglard, Marco Pagni
:
Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis. Bioinform. 35(13): 2258-2266 (2019) - 2017
- [j14]Anne Morgat
, Thierry Lombardot
, Kristian B. Axelsen
, Lucila Aimo
, Anne Niknejad, Nevila Hyka-Nouspikel, Elisabeth Coudert
, Monica Pozzato, Marco Pagni
, Sébastien Moretti
, Steven Rosanoff, Joseph Onwubiko
, Lydie Bougueleret, Ioannis Xenarios, Nicole Redaschi
, Alan J. Bridge
:
Updates in Rhea - an expert curated resource of biochemical reactions. Nucleic Acids Res. 45(Database-Issue): D415-D418 (2017) - 2016
- [j13]Jon C. Ison
, Kristoffer Rapacki, Hervé Ménager
, Matús Kalas
, Emil Rydza, Piotr Chmura
, Christian Anthon
, Niall Beard
, Karel Berka
, Dan M. Bolser
, Tim Booth
, Anthony Bretaudeau, Jan Brezovsky
, Rita Casadio
, Gianni Cesareni, Frederik Coppens
, Michael Cornell, Gianmauro Cuccuru
, Kristian Davidsen, Gianluca Della Vedova
, Tunca Dogan
, Olivia Doppelt-Azeroual
, Laura Emery, Elisabeth Gasteiger
, Thomas Gatter, Tatyana Goldberg, Marie Grosjean
, Björn A. Grüning
, Manuela Helmer-Citterich
, Hans Ienasescu, Vassilios Ioannidis
, Martin Closter Jespersen, Rafael C. Jiménez
, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe
, Jing-Woei Li, Luana Licata
, Fabien Mareuil
, Ivan Micetic
, Rune Møllegaard Friborg, Sébastien Moretti
, Chris Morris
, Steffen Möller, Aleksandra Nenadic, Hedi Peterson
, Giuseppe Profiti
, Peter M. Rice, Paolo Romano
, Paola Roncaglia, Rabie Saidi
, Andrea Schafferhans
, Veit Schwämmle
, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger
, Radka Svobodová Vareková
, Silvio C. E. Tosatto
, Victor de la Torre, Paolo Uva
, Allegra Via, Guy Yachdav, Federico Zambelli
, Gert Vriend, Burkhard Rost
, Helen E. Parkinson
, Peter Løngreen, Søren Brunak
:
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - [j12]Sébastien Moretti
, Olivier Martin, T. Van Du Tran
, Alan J. Bridge
, Anne Morgat
, Marco Pagni
:
MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. Nucleic Acids Res. 44(Database-Issue): 523-526 (2016) - 2014
- [j11]Thomas Bernard
, Alan J. Bridge
, Anne Morgat
, Sébastien Moretti
, Ioannis Xenarios
, Marco Pagni
:
Reconciliation of metabolites and biochemical reactions for metabolic networks. Briefings Bioinform. 15(1): 123-135 (2014) - [j10]Sébastien Moretti
, Balazs Laurenczy, Walid H. Gharib
, Briséïs Castella, Arnold Kuzniar
, Hannes Schabauer, Romain A. Studer, Mario Valle, Nicolas Salamin
, Heinz Stockinger
, Marc Robinson-Rechavi
:
Selectome update: quality control and computational improvements to a database of positive selection. Nucleic Acids Res. 42(Database-Issue): 917-921 (2014) - 2013
- [j9]Mathias Ganter, Thomas Bernard
, Sébastien Moretti
, Jörg Stelling, Marco Pagni
:
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks. Bioinform. 29(6): 815-816 (2013) - 2012
- [j8]Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi
, Edouard De Castro
, Severine Duvaud, Volker Flegel, Arnaud Fortier, Elisabeth Gasteiger
, Aurélien Grosdidier
, Céline Hernandez
, Vassilios Ioannidis
, Dmitri Kuznetsov
, Robin Liechti, Sébastien Moretti
, Khaled Mostaguir, Nicole Redaschi
, Grégoire Rossier
, Ioannis Xenarios
, Heinz Stockinger
:
ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 40(Web-Server-Issue): 597-603 (2012) - [c4]Sébastien Moretti
, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger:
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. HealthGrid 2012: 59-68 - [i1]Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger:
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. CoRR abs/1203.3092 (2012) - 2011
- [j7]Paolo Di Tommaso
, Sébastien Moretti
, Ioannis Xenarios
, Miquel Orobitg
, Alberto Montanyola, Jia-Ming Chang, Jean-François Taly, Cédric Notredame
:
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 39(Web-Server-Issue): 13-17 (2011) - 2010
- [c3]Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi
, Heinz Stockinger, Dean Flanders:
Phylogenetic Code in the Cloud - Can it Meet the Expectations? HealthGrid 2010: 55-63
2000 – 2009
- 2009
- [j6]Estelle Proux-Wéra
, Romain A. Studer
, Sébastien Moretti
, Marc Robinson-Rechavi
:
Selectome: a database of positive selection. Nucleic Acids Res. 37(Database-Issue): 404-407 (2009) - 2008
- [j5]Sébastien Moretti
, Andreas Wilm
, Desmond G. Higgins, Ioannis Xenarios
, Cédric Notredame
:
R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 36(Web-Server-Issue): 10-13 (2008) - [c2]Frederic B. Bastian
, Gilles Parmentier, Julien Roux, Sébastien Moretti
, Vincent Laudet, Marc Robinson-Rechavi
:
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species. DILS 2008: 124-131 - 2007
- [j4]Sébastien Moretti
, Fabrice Armougom, Iain M. Wallace
, Desmond G. Higgins, C. Victor Jongeneel
, Cédric Notredame
:
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res. 35(Web-Server-Issue): 645-648 (2007) - 2006
- [j3]Fabrice Armougom, Olivier Poirot
, Sébastien Moretti
, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame
:
APDB: a web server to evaluate the accuracy of sequence alignments using structural information. Bioinform. 22(19): 2439-2440 (2006) - [j2]Sébastien Moretti
, Frédéric Reinier, Olivier Poirot
, Fabrice Armougom, Stéphane Audic
, Vladimir Keduas, Cédric Notredame
:
PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. Nucleic Acids Res. 34(Web-Server-Issue): 600-603 (2006) - [j1]Fabrice Armougom, Sébastien Moretti
, Olivier Poirot
, Stéphane Audic
, Pierre Dumas, Basile Schaeli, Vladimir Keduas, Cédric Notredame
:
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. Nucleic Acids Res. 34(Web-Server-Issue): 604-608 (2006) - [c1]Fabrice Armougom, Sébastien Moretti
, Vladimir Keduas, Cédric Notredame
:
The iRMSD: a local measure of sequence alignment accuracy using structural information. ISMB (Supplement of Bioinformatics) 2006: 35-39
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last updated on 2024-04-25 05:47 CEST by the dblp team
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