CSE4065 – Spring 2024
Computational Genomics
Lecture 1: Introduction
Betül Boz
betul.demiroz@marmara.edu.tr
Agenda
◼ Course Info
◼ Course Outline
◼ Introduction to Computational Genomics
2
Course Info:
◼ Instructor: Asst. Prof. Betül Boz
❑ betul.demiroz@marmara.edu.tr
◼ Prerequisites
❑ None
◼ Lecture Times:
❑ Monday 11:30-12:20 Thursday 9:30-11:20
❑ M2-103
◼ Main Text Book
❑ Compeau Philip, Pevzner, Pavel: Bioinformatics Algorithms: An active
Learning Approach
❑ Durbin, Eddy, Krogh, Mitchison: Biological Sequence Analysis
❑ Makinen, Belazzougui, Cunial, Tomescu: Genome-Scale Algorithm Design
3
What This Course is About?
◼ Goal 1:
❑ Sequence and assemble DNA sequences
❑ Analyze genome
◼ Goal 2:
❑ Teach algorithms for sequence analysis
4
How Will You Be Evaluated?
◼ Quiz %10
◼ Assignment %25
◼ Midterm Exam %25
◼ Final Exam %40
5
Policies
◼ No late assignments accepted
◼ Everything must be your own work (unless otherwise specified)
◼ Cheating → Failing grade