(Trans) Chem 33 1 Nomenclature
(Trans) Chem 33 1 Nomenclature
(Trans) Chem 33 1 Nomenclature
W ee N e ca e
1.
3.
4. 4-nonen-3,7-dione
5.
6.
CHEM 33
W ee N e ca e
7.
8.
CHEM 33
W ee N e ca e
ANSWER KEY
2.
4.
6. me h l in l ke one
7. 2,4-dini o ol ene
When atoms bond to form molecules, they use molecular orbitals. These are
formed through the hybridization of the atomic orbitals that we have already
discussed, s, p, and d orbitals.
The hybridized molecular orbitals have different shapes and energy levels
than the atomic orbitals. The number of molecular orbitals created by
hybridization depends on the number of atomic orbitals that are mixed to form
them.
In forming sp3 hybridized orbitals, four atomic orbitals are mixed, one s and three
p. The energy diagram for this process is shown below. The hybridized orbitals
are higher in energy than the s orbital, but lower in energy than the p orbitals.
p
energy
sp3
s hybridization
Carbon has 4 valence electrons. Add these electrons to the atomic and
molecular orbitals. This hybridization gives tetrahedral geometry.
Draw and name the orbitals formed in this hybridization, then add the electrons
for sulfur. Since the hybridized orbitals are close in energy, every orbital is filled
with one electron before electrons are paired.
p
energy
s hybridization
In linear molecules, like CO2, the central atom has only two equivalent bonding
orbitals. Draw the energy levels and name the orbitals formed in this
hybridization.
p
energy
s hybridization
Fill in the electrons for carbon and determine the number and typed of bonds
formed.
In CO2, determine the hybridization of the oxygen atoms. Complete the energy
diagram for the oxygens. Draw the structure of CO 2.
p
energy
s hybridization
In atoms with n=3 or larger, the d orbitals can also be hybridized. In molecules
with five molecular orbitals, five atomic orbitals are mixed:
+ + + +
This will give trigonal bipyramidal geometry and is called dsp3 hybridization.
Shown below is a portion of the chart from Worksheet 13. Fill in the
hybridization for each of the compounds.
sp2 hybridized?
sp hybridized?
sp2 hybridized?
sp hybridized?
sp2 hybridized?
sp hybridized?
The acetate ion, C2H3O2- , has both oxygens bonded to the same carbon.
c) Pick one resonance structure and label the hybridization of each oxygen.
Exercises:
I. Determine whether the following organic compounds are chiral or achiral (no
chiral centers). If it is chiral, identify the stereogenic centers in the structural
formulas presented below.
II. Identify the chiral stereogenic centers in the structural formulas presented below.
1.
4.
2.
5.
3.
Answer Key:
I.
*Organic Compounds F and G are achiral so they do not have a stereogenic center/s.
II.
1. 4.
2.
5.
3.
Additional Resources
https://chem.libretexts.org/Bookshelves/Organic_Chemistry/Supplemental_Modules_(Or
ganic_Chemistry)/Chirality/Stereoisomers/Chirality_and_Symmetry/Enantiomorphism/Pr
actice_Problems
https://www.masterorganicchemistry.com/organic-chemistry-practice-problems/stereoch
emistry-practice-problems-and-quizzes/
https://apps-dso.sws.iastate.edu/si/documentdb/spring_2011/CHEM_331_Trahanovsky
_ericasbe_Chem_331_Worksheet_15_Key.pdf
http://leah4sci.com/chirality-and-stereochemistry-practice-quiz/
VALENCE BOND THEORY WORKSHEET
N2
SF6
2. What characteristic must the atomic orbitals involved in a bond have? “c”
a. They must have two electrons.
b. They must be p orbitals.
c. They must have one electron.
d. They must be s orbitals.
3. During the formation of a HCl molecule, the ___ orbital of hydrogen overlaps with the ___ orbital of
chlorine.
4. True or False
5. Covalent bonds are formed by _____ of atomic orbitals, each of which contains one electron of _____
the same spin.
VALENCE BOND THEORY WORKSHEET
In __________ In __________
Interference, waves that Interference, waves are
are in phase will combine out of phase and cancel
each other and increase each other out. This does
the ________. This is the not result in a bond.
only interference that
results in a bond.
Key to correction:
1. Complete the table below.
Compound Lewis Structure Hybridization of Number of sigma Number of pi
Central Atom bonds bonds
1. CH4 sp3 4 0
2. N2 sp 1 2
3. SF6 sp3 d2 6 0
2. C
3. 1s; 3p
4. False
5. Overlap; opposite
6-8. Overlapping orbitals are like overlapping waves.
2. For the compounds CH3Cl, CH3Br, CH3I, and CH3F, the correct order of
increasing C-halogen bond length is:
4. What kind of molecular orbital (sigma or pi) results when the two atomic
orbitals shown below approach each other sideways as indicated?
5. Identify the more polar bond in each of the following pairs of bonds:
a. HF or HCl
b. NO or CO
c. SH or OH
d. PCl or SCl
6. Which of the following statements describe the difference between a sigma (σ)
and a pi (π) bond?
A. Pi (π) bonds form a side-to-side overlap of hybridized sp, sp2, or sp3 orbitals.
B. Sigma (σ) bonds form the end-to-end overlap of two hybridized s or p orbitals.
C. The maximum number of sigma (σ) versus pi (π) bonds between atoms are
different but their energy levels are the same.
D. Only sigma (σ) bonds use hybridized orbitals to overlap in forming the bond.
7. The diagram below shows the electron arrangements of magnesium and
oxygen:
A. Two atoms share electrons so they can fill their outer shells
B. A hydrogen atom with a slight positive charge is attracted to a negative charge of
another molecule or atom
C. One atom loses one or more electrons and the other atom gains one or more
electrons
D. The constant motion of electrons and the creation of charge imbalances bonds
two molecules together
ANSWERS
1. B
2. A
Explanation: C-halogen bond length totally depends on the electronegativity difference
between Carbon and halogen. The more the difference is, the less is the bond length.
The electronegativity order of halogens is I<Br<Cl<F. Hence, the correct order of
increasing C-halogen bond length is CH3F < CH3 Cl
< CH3 Br < CH3I
3.
4. Pi
5. a. HF
b. CO
c. OH
d. PCl
6. D
7. a.
b. Ionic
8. A
CHEM33 LEC [TRANS]
HYBRIDIZATION
➢ The combination of pure atomic orbitals to form hybrid orbitals.
➢ The name of the orbital comes from the number of pure orbitals which comprise it.
○ sp = s + p
○ sp2 = S + p + p
○ sp3 = s + p + p + p
○ sp3d = s + p + p + p + d
○ sp3d2 = s + p + p + p + d + d
➢ The type of hybrid orbital formed dictates the shape or molecular geometry of the
molecule.
Hybridization
State
sp
sp2
sp3
sp3d
sp3d2
REMEMBER: The steric number is the number of atoms bonded to the central atom. Memorize
the corresponding hybridization state of the steric number! PERFECT MO NA QUIZ N’YAN.
The five basic shapes of hybridization are linear, trigonal planar, tetrahedral, trigonal
bipyramidal, and octahedral.
The geometry of the orbital arrangement:
● Linear: Two electron groups involved resulting in sp hybridization, the angle between the
orbitals is 180°.
● Trigonal planar: Three electron groups involved resulting in sp2 hybridization, the angle
between the orbitals is 120°.
● Tetrahedral: Four electron groups involved resulting in sp3 hybridization, the angle
between the orbitals is 109.5°.
● Trigonal bipyramidal: Five electron groups involved resulting in sp3d hybridization, the
angle between the orbitals is 90°, 120°.
● Octahedral: Six electron groups involved resulting in sp3d2 hybridization, the angle
between the orbitals is 90°.
Valence Bond Theory - two atoms should share one electron each to form covalent bonds
- proposes that atomic orbitals undergo orbital hybridization to satisfy the structural
requirements of a molecule
Valence Share Electron Repulsion (VSEPR Theory) - valence electrons (bonded and lone
pairs) repel each other
Sigma (𝝈) bond provides maximum head on overlap
Pi (𝛑) bond - unhybridized p orbital, created by side by side orbital overlap
The 𝝈 bond is always the first type of bond to form and is also the stronger one, rather than the
𝛑 bond. Moreover, unless a pair of atoms forms a sigma bond, there can be no pi bond
between them. Therefore, if a pair of atoms are held together by a single bond only, that must
be a sigma bond. Pi bonds are present only in cases of double and triple bonds.
C −C 1 bond
C =C 1 bond and 1 bond **Double bonds cannot rotate freely; otherwise, the pi bond will break.
CC 1 bond and 2 bond
WORKSHEET
1. In the molecule caffeine, identify the hybridization states of all nitrogen atoms.
2. Identify the hybridization states of the carbon atoms in the glucose molecule below.
5. Acrylonitrile is a colorless, volatile liquid with a pungent, onion-like odor. Acrylonitrile is widely
used in industry to produce rubber, resins, plastics, elastomers and synthetic fibers and to
manufacture carbon fibers used in aircraft, defense and aerospace industries. What is the
Hybridization state of the carbon atom 1 in the molecule? Identify the number of 𝝈 bond and 𝛑
bond.
6. What is the hybridization state of bromine in bromine pentafluoride (BrF5)?
2. Carbon atoms are in sp3 hybridization state since they all have four bonded atoms. Note
that there are hydrogen atoms that have been omitted in the bond-line structure. The
molecular formula of glucose is C6H12O6
3. The sulfur formed five hybrid orbitals therefore, it is sp3d hybridized. The sulfur is bonded
to four chlorine atoms and it also has one lone pair. Remember to draw the lewis
structure of the atoms so you won’t get confused with its valence electrons.
6. Bromine is in sp3d2 hybridization state since it formed six hybrid orbitals. Five fluorine
atoms and one lone pair are bonded to the bromine.
Double bonds are shown with two lines Triple bonds are shown with three lines
Triple bonds – draw in a straight line than zigzag because they are linear (180°)
Rule 1:
𝑠𝑝2 and 𝑠𝑝3 hybridized atoms in a straight chain should be drawn in zigzag format.
Rule 2:
Draw other bonds as far away from the double bond as possible.
AVOID THIS!
Rule 3:
THE SAME!
Rule 4:
All heteroatoms (such as nitrogen or oxygen) must be drawn, as well as the H atoms attached to them.
REMEMBER:
1. NEVER draw more than four bonds to a carbon atom (octet rule).
2. Draw all the bonds as far as possible from each other.
• Bond-line structures:
o Easier to read
o More obvious to see the changes/transformations
The formal charge on a N atoms can be calculated the same way or by matching its bonding pattern with
its formal charge
For some molecules, not every atom can have its preferred number of bonds and lone electron pairs.
Formal charge can be a useful concept in determining the most likely Lewis structure for a compound. In
general, preferred structures will have minimised formal charges on each atom.
In order to calculate the formal charge of an atom in a molecule, three things must be determined:
Formal charge = (valence electrons) – (lone pair electrons) – 1⁄2 (shared electrons)
A negative formal charge means that an atom has more electrons than it does in atomic form,
while a positive formal charge means that it has fewer electrons.
Examples:
A simple example of a 3D Structural Formula is that for methane, whose molecular formula is CH4
4.)
B) Answers:
1.
2.
3.
C)
Configuration using the Cahn-Ingold-Prelog System (R and S designation)
Proponents: Robert Cahn, Christopher Ingold at Vladimir Prelog, sila sisihin nyo.
Anyway, the Cahn-Ingold-Prelog (CIP) system involves assigning priorities to the four groups
attached to the chiral center. Bakit kailangang gawin yon? Kasi diba the difference in
enantiomers is only the way they are arranged in space, they needed the CIP to differentiate
enantiomers from each other.
Origin of terms
Mnemonics:
R = right = clockwise
S = sinister = counter clockwise kasi nakakatakot pag baliktad na takbo ng clock
How to name
It is more common to encounter two or more atoms connected to a chiral center having
the same atomic number. For example:
This case has two carbon atoms connected to the chiral center. So pano na to? Iyak
nalang? Of course not, jambo hakdog kaya mo to <3
1. Follow the same step 1 as with the case of four distinct substituents, assign highest (or
lowest) priority to distinct substituents. In the case of the example assign 1 to the OH
group and 4 to the H
2. In order to assign the priorities to the two carbon atoms connected to the chiral center,
we must first remember that besides the chiral center, both carbon atoms are connected
to 3 other atoms. List those 3 atoms in decreasing atomic number
3. In case of a tie, move farther away from the chiral center until the tie is broken
It is important to note that we are looking for the first point of difference, and that we are
assigning based on which has the higher atomic numbers, and not of which has the
higher sum total of lists. As seen below, the left side has higher priority because oxygen
(8) has higher atomic number than carbon (6).
4. In the case of double bonds, it is considered as two separate single bonds (same logic
with triple bonds, three separate single bonds)
Additive: Rotating the Molecule
Mahirap magrotate na walang actual model pero few tips lang siguro?
Example:
1. 2.
(S)-1-Fluoro-1-Methoxyethane (S)-3,3-dimethyl-1,2-pentadiol
3. 4.
(R)-1-ethoxy-N-ethylethanamine (3S, 4R)-4-amino-3-hydroxyhexan-2-one
Problem sets:
1.
2.
3.
4.
5.
E and Z Designation
The E-Z notation for geometric isomers is used to substitute for the ambiguity of cis-trans
naming. It is more reliable and particularly suited to tri- or tetrasubstituted alkenes, especially
when the substituents are not alkyl groups. Moreover, the cis-trans naming is for alkenes that
are disubstituted and is not reliable when there are more than two substituents in a double
bond.
Origin of terms
E - german word entgegen meaning “opposite”
Z - german word zusammen meaning “together”
Mnemonics:
Z - zame zide
E - eppesite
How to name
First, look at what is attached to each end of the double bond and determine which among them
is the higher priority. Take note that you can determine their priority by comparing their atomic
number. The higher the atomic number, the higher the priority.
(Z)-bromo-2-chlorofluoroethene
In this example, on the left side of the double bond, bromine has higher priority than fluorine,
and on the right side, chlorine has higher priority than hydrogen. If the two groups that are
higher in priority are on the same side (Zame Zide), it is notated as a (Z)-isomer.
(E)-bromo-2-chlorofluoroethene
As for this example, on the left side of the double bond, bromine has higher priority than
fluorine, and on the right side, chlorine has higher priority than hydrogen. This example is just
the same from the first one, but their positions are interchanged. If the two groups that are
higher in priority are on different side or opposite to each other(eppesite), it is notated as an
(E)-isomer
Examples:
(2Z,5E)-3-chloro-6-methylocta-2,5-diene
● If you have two or more double bonds, you have to place the number associated with E
or Z beside it.
Problem sets:
1.
2.
3.
4.
5.
Answer keys for r/s:
1. (R)-2-chloropentane
2. (S)-1-Bromo-2-methylbutane
3. (R)-1-methyl-4-(1-methylethenyl)-cyclohexene
4. (S)-3-methoxy-1-phenylprop-2-en-1-ol
5. (R)-propanol
Worksheet on Isomerism
Structural Isomerism:
1. How many structural isomers does C7H16 have? Draw them.
2. Identify which of the following are structural isomers for molecule (a).
a.
b.
c.
A. Functional
B. Positional
C. Chain
D. Optical
Conformational Isomerism:
2. Draw the Conformational Analysis of Propane and identify which is more stable.
3. Draw the most stable conformation of trans-1-tert-butyl-3-ethylcyclohexane.
4. Choose the correct potential-energy diagram for rotation about the C-2−C-3 bond of pentane
through 360∘, starting with the least stable conformer.
Answer sheet:
Structural Isomerism:
1. How many structural isomers does C7H16 have? Draw them.
2. Identify which of the following are structural isomers for molecule (a).
Answer:
a.
b.
c.
E. Functional
F. Positional
G. Chain
H. Optical
Answer: Optical
Conformational Isomerism:
Answer:
The second conformer is anti-staggered and the most stable because the Br substituents are in
the equatorial position.
2. Draw the Conformational Analysis of Propane and identify which is more stable.
Answer: The staggered conformation is more stable than the eclipsed conformation.
a. f. k. p.
O O
C N
NH2
H2N
H2N
b. g. l. q.
O O
N C N NH2
c. h. m. r.
O O
C N H2N NH2
H2N
d. i. n. s.
O C N O O
H2N
N
e. j. o. t.
O HN C N O O
OH
HN
Answers to Even More Resonance Practice Problems
a.
O O
O
H2N H2N
H2N
b.
O O
O
c.
O O
O
O
d.
O O
O
N N
N
O O
N N
e.
HN
O O
O
HN HN
HN
f.
C N C N
H2N H2N
g.
N C N N C N
N C N
N C N
h.
C N C N
C N
H2N H2N
H2N
C N
H2N
i.
C N C N C N
C N C N
H2N H2N
j.
HN C N HN C N HN C N
HN C N
k.
O O
l.
O O O
m.
O O O
n.
O O O
O O O
o.
O O O O
O O
O O
p.
NH2 NH2
NH2
q.
NH2 NH2
NH2 NH2
r.
H2N NH2
s.
t.
OH OH OH
OH