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Report for CCDS52715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52715.1 Public Mus musculus 9 Gria4 23 108 98 CCDS HistoryNCBI Gene:14802Re-query CCDS DB by CCDS ID:52715.1Re-query CCDS DB by GeneID:14802See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027020.12 ENSMUSP00000027020.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027020.12Link to Ensembl Protein Viewer:ENSMUSP00000027020.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027020Re-query CCDS DB by Protein ID:ENSMUSP00000027020
Original member Current member EBI ENSMUST00000212533.1 ENSMUSP00000148533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212533.1Link to Ensembl Protein Viewer:ENSMUSP00000148533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212533Re-query CCDS DB by Protein ID:ENSMUSP00000148533
Original member NCBI NM_001113180.1 NP_001106651.1 Updated not alive Link to Nucleotide Sequence:NM_001113180.1Link to Protein Sequence:NP_001106651.1Re-query CCDS DB by Nucleotide ID:NM_001113180Re-query CCDS DB by Protein ID:NP_001106651
Current member NCBI NM_001113180.2 NP_001106651.2 Accepted alive Link to Nucleotide Sequence:NM_001113180.2Link to Protein Sequence:NP_001106651.2Re-query CCDS DB by Nucleotide ID:NM_001113180Re-query CCDS DB by Protein ID:NP_001106651Link to BLAST:NP_001106651.2

Chromosomal Locations for CCDS 52715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4420152 4420316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4424320 4424454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4432773 4432887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4456005 4456252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4461906 4462104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4464114 4464484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4472012 4472218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4480178 4480288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4502374 4502478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4503562 4503729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4513223 4513381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4519486 4519539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4537635 4537819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4664768 4665007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4793810 4793968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4795187 4795274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2709 nt):
ATGAGGATTATTTGCAGGCAGATTGTCTTGTTGTTTTCTGGATTTTGGGGACTCGCCATGGGAGCCTTTC
CGAGCAGCGTTCAAATAGGTGGTCTCTTTATCCGAAACACAGACCAGGAATACACTGCTTTTCGGCTAGC
TATCTTTCTTCATAACACCAGCCCCAATGCATCTGAAGCCCCTTTCAATTTGGTACCTCATGTGGACAAC
ATTGAGACTGCCAACAGTTTTGCTGTGACAAATGCATTCTGTTCCCAGTATTCTAGAGGGGTGTTTGCCA
TTTTTGGACTCTATGACAAGAGGTCAGTGCATACCTTGACCTCCTTCTGCAGTGCTCTGCACATCTCTCT
CATCACACCAAGCTTCCCCACTGAAGGAGAGAGCCAGTTCGTGCTTCAGCTAAGACCTTCATTGAGAGGT
GCACTCCTGAGCCTCCTGGATCACTATGAATGGAATTGTTTTGTCTTCCTGTATGATACAGACAGGGGGT
ATTCAATACTTCAAGCTATAATGGAAAAAGCAGGACAGAATGGATGGCATGTCAGTGCGATATGTGTGGA
AAATTTTAACGATGTCAGCTACAGGCAACTACTAGAAGAGCTTGACAGAAGACAAGAGAAGAAATTTGTA
ATAGATTGTGAGATAGAAAGGCTTCAAAACATATTAGAACAAATTGTGAGTGTTGGGAAGCACGTCAAAG
GCTACCATTATATCATCGCAAATTTGGGTTTCAAAGATATTTCTCTTGAGAGATTTATACATGGAGGAGC
AAATGTCACTGGATTCCAGTTAGTAGATTTTAATACGCCCATGGTGACGAAACTAATGGATCGCTGGAAG
AAACTAGATCAACGAGAATATCCAGGATCTGAAACACCTCCAAAGTACACTTCTGCTCTCACTTACGATG
GTGTCTTGGTAATGGCTGAAACTTTCCGAAGTCTCAGAAGACAGAAAATTGATATTTCAAGGAGAGGAAA
TGCCGGGGATTGTCTGGCAAACCCTGCTGCTCCCTGGGGCCAGGGAATTGACATGGAGAGAACACTGAAG
CAGGTTCGAATTCAAGGACTGACTGGGAATGTTCAATTTGACCACTATGGACGTAGAGTTAATTACACAA
TGGATGTGTTTGAATTAAAAAGCACAGGACCTCGAAAGGTTGGCTATTGGAACGATATGGATAAATTAGT
CTTGATTCAAGATGCGCCTACTCTTGGCAATGACACAGCAGCTATCGAGAACAGAACAGTGGTTGTAACC
ACAATTATGGAATCCCCCTACGTTATGTACAAGAAAAATCATGAAATGTTTGAAGGAAATGACAAGTATG
AAGGCTACTGTGTAGACTTGGCATCTGAAATTGCGAAACATATCGGTATCAAATATAAAATTGCCATTGT
CCCTGATGGAAAATATGGAGCAAGGGATGCGGACACCAAAATTTGGAATGGGATGGTAGGAGAGCTTGTG
TATGGGAAAGCAGAGATTGCCATTGCACCTCTGACAATCACGTTGGTGCGAGAGGAGGTCATCGACTTTT
CTAAGCCTTTTATGAGTTTAGGCATCTCTATCATGATCAAAAAACCTCAGAAATCTAAACCAGGAGTGTT
TTCCTTCTTGGACCCTCTGGCCTATGAGATCTGGATGTGCATAGTGTTTGCATACATTGGTGTCAGCGTG
GTCTTGTTCCTAGTCAGTAGGTTTAGCCCATATGAGTGGCACACAGAAGAGCCTGAGGATGGAAAAGAAG
GACCCAGTGACCAACCTCCCAATGAGTTTGGCATCTTTAACAGCCTCTGGTTTTCCCTGGGTGCCTTTAT
GCAACAAGGATGTGACATTTCACCCAGATCCCTGTCCGGTCGGATTGTTGGAGGCGTATGGTGGTTCTTC
ACTCTCATCATTATCTCATCCTACACTGCTAATCTGGCTGCATTCCTGACAGTGGAGAGAATGGTCTCCC
CCATAGAAAGTGCAGAAGACCTGGCCAAACAAACAGAAATTGCCTATGGAACACTTGATTCGGGATCAAC
AAAAGAATTCTTCAGAAGATCAAAAATAGCAGTATATGAAAAGATGTGGACCTACATGCGATCGGCAGAG
CCATCTGTGTTCACTAGAACTACAGCTGAGGGCGTGGCCCGTGTCCGCAAGTCCAAGGGCAAATTTGCCT
TCCTCCTGGAGTCCACGATGAATGAATACATTGAGCAGCGAAAGCCCTGTGACACGATGAAAGTGGGAGG
AAACCTGGATTCCAAAGGCTATGGTGTAGCGACGCCCAAGGGTTCCTCATTAAGAAATGCTGTTAACCTC
GCAGTTTTAAAACTGAATGAACAAGGCCTCTTGGACAAATTGAAAAACAAATGGTGGTACGACAAAGGAG
AATGTGGCAGCGGGGGAGGTGACTCCAAGGACAAGACGAGTGCCTTGAGCCTGAGCAACGTAGCAGGCGT
CTTCTACATTCTGGTTGGCGGCTTGGGCTTGGCAATGCTGGTGGCTTTGATAGAGTTCTGTTACAAGTCC
AGGGCAGAGGCGAAGAGAATGAAGCTGACTTTTTCCGAAGCCATAAGAAACAAAGCCAGGTTATCCATCA
CTGGGAGTGTGGGAGAAAACGGCCGTGTGCTGACCCCCGACTGCCCCAAGGCCGTACACACAGGAACTGC
GATTAGACAGAGCTCGGGATTGGCTGTCATTGCATCGGACCTACCATAA

Translation (902 aa):
MRIICRQIVLLFSGFWGLAMGAFPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDN
IETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRG
ALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFV
IDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFNTPMVTKLMDRWK
KLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLK
QVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQDAPTLGNDTAAIENRTVVVT
TIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELV
YGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSV
VLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFF
TLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAE
PSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRNAVNL
AVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKS
RAEAKRMKLTFSEAIRNKARLSITGSVGENGRVLTPDCPKAVHTGTAIRQSSGLAVIASDLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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