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Search Results (46,305)

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15 pages, 33522 KiB  
Article
Multiloss Joint Gradient Control Knowledge Distillation for Image Classification
by Wei He, Jianchen Pan, Jianyu Zhang, Xichuan Zhou, Jialong Liu, Xiaoyu Huang and Yingcheng Lin
Electronics 2024, 13(20), 4102; https://doi.org/10.3390/electronics13204102 (registering DOI) - 17 Oct 2024
Abstract
Knowledge distillation (KD) techniques aim to transfer knowledge from complex teacher neural networks to simpler student networks. In this study, we propose a novel knowledge distillation method called Multiloss Joint Gradient Control Knowledge Distillation (MJKD), which functions by effectively combining feature- and logit-based [...] Read more.
Knowledge distillation (KD) techniques aim to transfer knowledge from complex teacher neural networks to simpler student networks. In this study, we propose a novel knowledge distillation method called Multiloss Joint Gradient Control Knowledge Distillation (MJKD), which functions by effectively combining feature- and logit-based knowledge distillation methods with gradient control. The proposed knowledge distillation method discretely considers the gradients of the task loss (cross-entropy loss), feature distillation loss, and logit distillation loss. The experimental results suggest that logits may contain more information and should, consequently, be assigned greater weight during the gradient update process in this work. The empirical findings on the CIFAR-100 and Tiny-ImageNet datasets indicate that MJKD generally outperforms traditional knowledge distillation methods, significantly enhancing the generalization ability and classification accuracy of student networks. For instance, MJKD achieves a 63.53% accuracy on Tiny-ImageNet for the ResNet18 MobileNetV2 pair. Furthermore, we present visualizations and analyses to explore its potential working mechanisms. Full article
(This article belongs to the Special Issue Knowledge Information Extraction Research)
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Figure 1
<p>The figure illustrates the concept of knowledge distillation [<a href="#B3-electronics-13-04102" class="html-bibr">3</a>] alongside our proposed Multiloss Joint Gradient Control Knowledge Distillation (MJKD) approach. In MJKD, the gradients associated with the task loss, logit distillation loss, and feature distillation loss are computed independently and subsequently utilized to update their respective momentum buffers.</p>
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<p>Task loss on CIFAR-100 (<b>a</b>) and Tiny-ImageNet (<b>b</b>).</p>
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<p>Distillation Loss on CIFAR-100 (<b>a</b>,<b>c</b>) and Tiny-ImageNet (<b>b</b>,<b>d</b>).</p>
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<p>Illustration of loss for weighing <math display="inline"><semantics> <mi>α</mi> </semantics></math> on CIFAR-100 and Tiny-ImageNet.</p>
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<p>Loss landscapes of (<b>a</b>) KD, (<b>b</b>) DKD, and (<b>c</b>) MJKD on the Tiny-ImageNet dataset.</p>
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<p>Difference in the correlation matrices of student and teacher logits on the Tiny-ImageNet dataset.</p>
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3 pages, 261 KiB  
Editorial
GABA Signaling in Health and Disease in the Nervous System
by Alexandre Hiroaki Kihara
Int. J. Mol. Sci. 2024, 25(20), 11193; https://doi.org/10.3390/ijms252011193 (registering DOI) - 17 Oct 2024
Abstract
Throughout development, gamma-aminobutyric acid, or GABA, plays a role in the proliferation, migration, and differentiation of neural progenitor cells. The maturation of synapses and the process of neuritogenesis were both demonstrated to be controlled by GABA. Among the neurotransmitters that contribute to the [...] Read more.
Throughout development, gamma-aminobutyric acid, or GABA, plays a role in the proliferation, migration, and differentiation of neural progenitor cells. The maturation of synapses and the process of neuritogenesis were both demonstrated to be controlled by GABA. Among the neurotransmitters that contribute to the excitatory-inhibitory balance in the mature brain, GABA is believed to be the primary inhibitory neurotransmitter. Neurodevelopmental disorders and neurodegenerative diseases are frequently linked to shifts in this equilibrium [...] Full article
(This article belongs to the Special Issue GABA Signaling in Health and Disease in the Nervous System)
23 pages, 2762 KiB  
Article
Design and Evaluation of a Novel Variable Stiffness Hip Joint Exoskeleton
by Tao Yang, Chifu Yang, Feng Jiang and Bowen Tian
Sensors 2024, 24(20), 6693; https://doi.org/10.3390/s24206693 (registering DOI) - 17 Oct 2024
Abstract
An exoskeleton is a wearable device with human–machine interaction characteristics. An ideal exoskeleton should have kinematic and kinetic characteristics similar to those of the wearer. Most traditional exoskeletons are driven by rigid actuators based on joint torque or position control algorithms. In order [...] Read more.
An exoskeleton is a wearable device with human–machine interaction characteristics. An ideal exoskeleton should have kinematic and kinetic characteristics similar to those of the wearer. Most traditional exoskeletons are driven by rigid actuators based on joint torque or position control algorithms. In order to achieve better human–robot interaction, flexible actuators have been introduced into exoskeletons. However, exoskeletons with fixed stiffness cannot adapt to changing stiffness requirements during assistance. In order to achieve collaborative control of stiffness and torque, a bionic variable stiffness hip joint exoskeleton (BVS-HJE) is designed in this article. The exoskeleton proposed in this article is inspired by the muscles that come in agonist–antagonist pairs, whose actuators are arranged in an antagonistic form on both sides of the hip joint. Compared with other exoskeletons, it has antagonistic actuators with variable stiffness mechanisms, which allow the stiffness control of the exoskeleton joint independent of force (or position) control. A BVS-HJE model was established to study its variable stiffness and static characteristics. Based on the characteristics of the BVS-HJE, a control strategy is proposed that can achieve independent adjustment of joint torque and joint stiffness. In addition, the variable stiffness mechanism can estimate the output force based on the established mathematical model through an encoder, thus eliminating the additional force sensors in the control process. Finally, the variable stiffness properties of the actuator and the controllability of joint stiffness and joint torque were verified through experiments. Full article
17 pages, 1815 KiB  
Article
Decoding the Genetic Basis of Mast Cell Hypersensitivity and Infection Risk in Hypermobile Ehlers-Danlos Syndrome
by Purusha Shirvani, Arash Shirvani and Michael F. Holick
Curr. Issues Mol. Biol. 2024, 46(10), 11613-11629; https://doi.org/10.3390/cimb46100689 (registering DOI) - 17 Oct 2024
Abstract
Hypermobile Ehlers-Danlos syndrome (hEDS) is a connective tissue disorder marked by joint hypermobility, skin hyperextensibility, and tissue fragility. Recent studies have linked hEDS with mast cell activation syndrome (MCAS), suggesting a genetic interplay affecting immune regulation and infection susceptibility. This study aims to [...] Read more.
Hypermobile Ehlers-Danlos syndrome (hEDS) is a connective tissue disorder marked by joint hypermobility, skin hyperextensibility, and tissue fragility. Recent studies have linked hEDS with mast cell activation syndrome (MCAS), suggesting a genetic interplay affecting immune regulation and infection susceptibility. This study aims to decode the genetic basis of mast cell hypersensitivity and increased infection risk in hEDS by identifying specific genetic variants associated with these conditions. We conducted whole-genome sequencing (WGS) on 18 hEDS participants and 7 first-degree relatives as controls, focusing on identifying genetic variants associated with mast cell dysregulation. Participants underwent clinical assessments to document hEDS symptoms and mast cell hypersensitivity, with particular attention to past infections and antihistamine response. Our analysis identified specific genetic variants in MT-CYB, HTT, MUC3A, HLA-B and HLA-DRB1, which are implicated in hEDS and MCAS. Protein–protein interaction (PPI) network analysis revealed significant interactions among identified variants, highlighting their involvement in pathways related to antigen processing, mucosal protection, and collagen synthesis. Notably, 61.1% of the hEDS cohort reported recurrent infections compared to 28.5% in controls, and 72.2% had documented mast cell hypersensitivity versus 14.2% in controls. These findings provide a plausible explanation for the complex interplay between connective tissue abnormalities and immune dysregulation in hEDS. The identified genetic variants offer insights into potential therapeutic targets for modulating mast cell activity and improving patient outcomes. Future research should validate these findings in larger cohorts and explore the functional implications of these variants to develop effective treatment strategies for hEDS and related mast cell disorders. Full article
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<p>Protein–protein interaction network highlighting mast cell hypersensitivity pathways. This figure illustrates the protein–protein interaction network, which demonstrated significantly more interactions than expected for a random set of proteins, with a PPI enrichment <span class="html-italic">p</span>-value of 1.49 × 10<sup>−10</sup>. The Markov cluster algorithm (MCL) identified at least six distinct clusters within the network. MCL is a method used to cluster proteins based on their interaction patterns within a protein-protein interaction network. This approach helps identify groups of proteins that interact more frequently with each other than with those outside the group, suggesting functional relatedness. The first cluster is involved in antigen processing and the presentation of endogenous peptide antigens and MHC protein complexes (red border). The second cluster relates to the defective GALNT3 causing hyperphosphatemic familial tumoral calcinosis (HFTC), including genes such as MUC3A, MUC16, MUC19, and ZNF717 (green circle). These MUC genes are major glycoprotein components of mucus gels, providing a protective barrier against particles and infectious agents at mucosal surfaces and potentially involved in ligand binding and intracellular signaling. The third cluster is associated with collagen chain trimerization and extracellular matrix structural constituents conferring tensile strength, including genes such as COL4A2, COL6A2 and MMP16 (yellow circle). The fourth cluster relates to retinoid and cholesterol metabolism, including genes such as LPL and LRP2 (blue circle). The fifth cluster is associated with mitochondrial complex I assembly model OXPHOS system, including genes such as MT-ND1 and ACAD9 (green rectangle). The last cluster relates to triplet repeat expansion, including genes such as SPTA1 (black circle). This refers to proteins encoded by a gene which has a triplet repeat expansion, i.e., the increase of triplet (trinucleotide) repeats within the gene sequence. The length of such repeats is frequently polymorphic, and there is often a correlation between repeat length and disease severity.</p>
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<p>Protein–protein interaction network capturing hEDS-specific genes with potential relationships to established EDS genes. This figure illustrates the protein–protein interaction network, which showed significantly more interactions than expected for a random set of proteins, with a PPI enrichment <span class="html-italic">p</span>-value of 1.49 × 10<sup>−10</sup>. The red nodes represent the known genes associated with different types of EDS, while the green nodes represent genes with variations specific to hEDS subjects that have relationships with these known genes. All of these genes, except PHACTR1, are involved in collagen chain trimerization and extracellular matrix structural constituents conferring tensile strength. PHACTR1 (phosphatase and actin regulator 1) binds actin monomers (G actin) and plays a role in various processes, including the regulation of actin cytoskeleton dynamics, actin stress fibers formation, cell motility and survival, tubule formation by endothelial cells, and regulation of PPP1CA activity. It is also involved in the regulation of cortical neuron migration and dendrite arborization. To simplify the figure, pathways related to HLA and information repeated from <a href="#cimb-46-00689-f001" class="html-fig">Figure 1</a> have been removed from this pathway.</p>
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<p>Protein–protein interaction network capturing MCAS-specific genetic variants in hEDS with potential relationships to established MCAS genes. This figure illustrates the protein–protein interaction network, which demonstrated significantly more interactions than would be expected for a random set of proteins, with a PPI enrichment <span class="html-italic">p</span>-value of 1.0 × 10<sup>−16</sup>. The red and green nodes represent known genes associated with mast cell activation syndrome (MCAS), while the yellow nodes represent genes with variations specific to hEDS subjects that have relationships with these known MCAS genes. The red nodes are involved in pathways related to hematopoietic or lymphoid organ development, whereas the yellow nodes participate in inflammatory responses and the positive regulation of interleukin-10 production. The results demonstrate that all known genes related to mast cell activation syndrome or mast cell hypersensitivity are interconnected, as anticipated. We identified additional genes within this network, including TLR1, RET, HP, ZNF521, and CCR5. Notably, ZNF521, a transcription factor, was also identified in the pathway depicted in <a href="#cimb-46-00689-f002" class="html-fig">Figure 2</a>. It plays a role alongside RUNX2 in regulating osteoblast differentiation. To simplify the figure, pathways related to HLA and information repeated from <a href="#cimb-46-00689-f001" class="html-fig">Figure 1</a> and <a href="#cimb-46-00689-f002" class="html-fig">Figure 2</a> have been removed from this pathway.</p>
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15 pages, 5038 KiB  
Article
Investigation of the Automatic Monitoring System of a Solar Power Plant with Flexible PV Modules
by Žydrūnas Kavaliauskas, Igor Šajev, Giedrius Blažiūnas and Giedrius Gecevičius
Appl. Sci. 2024, 14(20), 9500; https://doi.org/10.3390/app14209500 (registering DOI) - 17 Oct 2024
Abstract
During this research, an automatic monitoring system was developed to monitor the working parameters in a solar power plant consisting of two flexible silicon modules. The first stage of the monitoring system relies on a microcontroller, which collects data from wattmeter modules made [...] Read more.
During this research, an automatic monitoring system was developed to monitor the working parameters in a solar power plant consisting of two flexible silicon modules. The first stage of the monitoring system relies on a microcontroller, which collects data from wattmeter modules made using a microcontroller. This tier also includes DC/DC converter and RS232-TCP converter modules for data transfer. The second stage, the industrial PLC, receives data from the first stage and transmits them to the PC, where the information is stored and the processes are visualized on the HMI screen. During this study, the charging process was analyzed using PWM- and MPPT-type charging controllers, as well as the power supply of Fito LED strips for lighting plants. Using the created monitoring system, the parameters of the solar power plant with flexible PV modules were monitored. This study compared PWM and MPPT battery charging methods, finding that MPPT is more efficient, especially under unstable solar conditions. MPPT technology optimizes energy usage more efficiently, resulting in faster battery charging compared to PWM technology. Full article
(This article belongs to the Special Issue Applied Electronics and Functional Materials)
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<p>Conceptual diagram of the system for monitoring the working parameters of a solar power plant with flexible modules.</p>
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<p>The main block diagram of the monitoring system.</p>
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<p>Electrical diagram of power measurement.</p>
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<p>Electrical diagram of the first stage of the monitoring system.</p>
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<p>PCB of the power measurement circuit (<b>a</b>) and the circuit of the first stage of the monitoring system (<b>b</b>).</p>
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<p>An image of the main window of the PC program with settings.</p>
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<p>Control program algorithms: (<b>a</b>) power measurement module program algorithm; (<b>b</b>) algorithm of the first stage of the monitoring system and (<b>c</b>) algorithm of the second stage of the monitoring system.</p>
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<p>Dependence of PWM cycle length on battery charge level.</p>
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<p>Battery voltage dependence when PWM and MPPT systems are used for charging.</p>
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<p>Time dependence of the efficiency of PWM and MPPT charging controllers.</p>
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34 pages, 3117 KiB  
Article
S&SEM: A Secure and Speed-Up Election Mechanism for PoS-Based Blockchain Network
by Sana Naz, Mohsin Javaid Siddiqui and Scott Uk-Jin Lee
Mathematics 2024, 12(20), 3263; https://doi.org/10.3390/math12203263 (registering DOI) - 17 Oct 2024
Abstract
To be a stakeholder/validator/token holder is not so difficult in the Proof of Stake (POS)-based blockchain networks; that is why the number of validators is large in these networks. These validators play an essential part in the block creation process in the PoS-based [...] Read more.
To be a stakeholder/validator/token holder is not so difficult in the Proof of Stake (POS)-based blockchain networks; that is why the number of validators is large in these networks. These validators play an essential part in the block creation process in the PoS-based blockchain network. Due to the large validators, the block creation time and communication message broadcasting overhead get increased in the network. Many consensus algorithms use different techniques to reduce the number of validators, such as Delegated Proof of Stake (DPoS) consensus algorithms, which select the set of delegators via stake transactions for the block creation process. In this paper, we propose S&SEM, a secure and speed-up election process to select the ‘z’ number of validators/delegators. The presented election process is based on a traditional voting style with multiple numbers of rounds. The presented election mechanism reduces the possibility of malicious activity in the voting process by introducing a special vote message and a round that checks duplicate votes. We did horizontal scaling in the network to speed up the election process. We designed an improved incentive mechanism for the fairness of the election process. The designed reward and penalty procedure controls the nodes’ behaviors in the network. We simulate the S&SEM, and the result shows that the presented election process is faster and more secure to select delegators than the existing process used by DPOS. Full article
21 pages, 9041 KiB  
Article
All Deforestation Matters: Deforestation Alert System for the Caatinga Biome in South America’s Tropical Dry Forest
by Diego Pereira Costa, Carlos A. D. Lentini, André T. Cunha Lima, Soltan Galano Duverger, Rodrigo N. Vasconcelos, Stefanie M. Herrmann, Jefferson Ferreira-Ferreira, Mariana Oliveira, Leonardo da Silva Barbosa, Carlos Leandro Cordeiro, Nerivaldo Afonso Santos, Rafael Oliveira Franca Rocha, Deorgia T. M. Souza and Washington J. S. Franca Rocha
Sustainability 2024, 16(20), 9006; https://doi.org/10.3390/su16209006 (registering DOI) - 17 Oct 2024
Abstract
This study provides a comprehensive overview of Phase I of the deforestation dryland alert system. It focuses on its operation and outcomes from 2020 to 2022 in the Caatinga biome, a unique Brazilian dryland ecosystem. The primary objectives were to analyze deforestation dynamics, [...] Read more.
This study provides a comprehensive overview of Phase I of the deforestation dryland alert system. It focuses on its operation and outcomes from 2020 to 2022 in the Caatinga biome, a unique Brazilian dryland ecosystem. The primary objectives were to analyze deforestation dynamics, identify areas with highest deforestation rates, and determine regions that require prioritization for anti-deforestation efforts and conservation actions. The research methodology involved utilizing remote sensing data, including Landsat imagery, processed through the Google Earth Engine platform. The data were analyzed using spectral unmixing, adjusted Normalized Difference Fraction Index, and harmonic time series models to generate monthly deforestation alerts. The findings reveal a significant increase in deforestation alerts and deforested areas over the study period, with a 148% rise in alerts from 2020 to 2022. The Caatinga biome was identified as the second highest in detected deforestation alerts in Brazil in 2022, accounting for 18.4% of total alerts. Hexagonal assessments illustrate diverse vegetation cover and alert distribution, enabling targeted conservation efforts. The Bivariate Choropleth Map demonstrates the nuanced relationship between alert and vegetation cover, guiding prioritization for deforestation control and native vegetation restoration. The analysis also highlighted the spatial heterogeneity of deforestation, with most deforestation events occurring in small patches, averaging 10.9 ha. The study concludes that while the dryland alert system (SAD-Caatinga—Phase I) has effectively detected deforestation, ongoing challenges such as cloud cover, seasonality, and more frequent and precise monitoring persist. The implementation of DDAS plays a critical role in sustainable forestry by enabling the prompt detection of deforestation, which supports targeted interventions, helps contain the process, and provides decision makers with early insights to distinguish between legal and illegal practices. These capabilities inform decision-making processes and promote sustainable forest management in dryland ecosystems. Future improvements, including using higher-resolution imagery and artificial intelligence for validation, are essential to detect smaller deforestation alerts, reduce manual efforts, and support sustainable dryland management in the Caatinga biome. Full article
(This article belongs to the Special Issue Sustainable Forestry for a Sustainable Future)
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<p>The Caatinga biome (green), the drylands (hatched reddish-brown lines), and the seven observing points (red circles) over Ceará (CE), Paraíba (PB), and Bahia (BA) states. These photos illustrate the biome. Image sources: own work by the authors.</p>
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<p>Methodological roadmap and data analysis of the DDAS deforestation alert system. The blue color represents deforestation alerts.</p>
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<p>Temporal patterns of NDFI and NDFIa across different vegetation covers. The red dot in the left panel indicates the pixel for which the values are shown in the right panel. (<b>A</b>) displays the pattern for a forested pixel; (<b>B</b>) illustrates the patterns for a pixel covered by savanna; (<b>C</b>) shows the patterns for a pixel covered by grassland.</p>
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<p>Frequency histogram of deforestation area classes (in ha) in the Caatinga biome.</p>
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<p>Upper panels: trend maps based on 10 km hexagons of vegetation cover percentage (<b>A</b>) and deforestation alert percentage (<b>B</b>). Lower panels: the Bivariate Choropleth Map (<b>C</b>) based on 10 km hexagon statistics along the Caatinga biome and the vegetation cover and alert combination matrix (<b>D</b>) with their area (ha) and frequency of occurrence (%).</p>
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<p>Bivariate Choropleth Map trend summary between alert number (<span class="html-italic">Y</span>-axis in the charts) and alert area (<span class="html-italic">X</span>-axis in the charts) based on spatial clipping groups: (<b>A</b>,<b>H</b>) land ownership profile, (<b>B</b>,<b>I</b>) infrastructure, (<b>C</b>–<b>E</b>) hydrographic divisions, (<b>F</b>) administrative territories, and (<b>G</b>) conservation territories.</p>
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<p>This figure describes the examples of deforestation in the Caatinga biome and illustrates six representative drivers of deforestation in the Caatinga biome: the development of solar and wind renewable energy projects, urban expansion, logging, pasture activities, and the development of irrigated agriculture projects. Image sources: Own work by the authors.</p>
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18 pages, 1748 KiB  
Article
Deformation Control in Mesoscale Micro-Milling of Curved Thin-Walled Structures
by Jie Yi, Xinyao Wang, Yichen Zhu, Xurui Wang and Junfeng Xiang
Materials 2024, 17(20), 5071; https://doi.org/10.3390/ma17205071 (registering DOI) - 17 Oct 2024
Abstract
The micro-machining scale effect makes it challenging to forecast and control the process parameters of the micro-milling process, which makes the micro-flanking-milling of weak-rigidity micro-thin-walled parts prone to deformation. To determine the critical cutting parameters for chip formation in the micro-milling of curved [...] Read more.
The micro-machining scale effect makes it challenging to forecast and control the process parameters of the micro-milling process, which makes the micro-flanking-milling of weak-rigidity micro-thin-walled parts prone to deformation. To determine the critical cutting parameters for chip formation in the micro-milling of curved thin-walled parts at the mesoscale, the strain-softening effect of titanium alloy during high-speed milling and the scale effect of mesoscale cutting were comprehensively considered and a finite element prediction model for curved micro-thin-wall micro-milling was established to determine the critical milling parameters for effective material removal. Based on the determined milling parameters, an experimental design of response surface optimization was carried out. Based on the response surface methodology, a data-driven quantitative model with milling process parameters as design variables and deformation amounts as response variables was established to reveal the influence mechanism of multiple milling process parameters on machining accuracy. Based on the process requirements for deformation control in the micro-milling of curved thin-walled structures, dynamic optimization of the milling process parameters was performed using an improved NSGA-III algorithm to obtain non-dominated solutions. A visual ranking and a determination of the unique solution were conducted using the entropy weight–TOPSIS method. Finally, micro-milling validation experiments were carried out using the optimal parameter combination. The optimal solution for the process parameters of the arc-shaped micro-thin-wall micro-milling of titanium alloy established by the institute provides a relevant reference and guidance for mesoscale arc-shaped thin-wall micro-milling. Full article
26 pages, 1656 KiB  
Article
Secure and Transparent Lung and Colon Cancer Classification Using Blockchain and Microsoft Azure
by Entesar Hamed I. Eliwa, Amr Mohamed El Koshiry, Tarek Abd El-Hafeez and Ahmed Omar
Adv. Respir. Med. 2024, 92(5), 395-420; https://doi.org/10.3390/arm92050037 (registering DOI) - 17 Oct 2024
Abstract
Background: The global healthcare system faces challenges in diagnosing and managing lung and colon cancers, which are significant health burdens. Traditional diagnostic methods are inefficient and prone to errors, while data privacy and security concerns persist. Objective: This study aims to develop a [...] Read more.
Background: The global healthcare system faces challenges in diagnosing and managing lung and colon cancers, which are significant health burdens. Traditional diagnostic methods are inefficient and prone to errors, while data privacy and security concerns persist. Objective: This study aims to develop a secure and transparent framework for remote consultation and classification of lung and colon cancer, leveraging blockchain technology and Microsoft Azure cloud services. Dataset and Features: The framework utilizes the LC25000 dataset, containing 25,000 histopathological images, for training and evaluating advanced machine learning models. Key features include secure data upload, anonymization, encryption, and controlled access via blockchain and Azure services. Methods: The proposed framework integrates Microsoft Azure’s cloud services with a permissioned blockchain network. Patients upload CT scans through a mobile app, which are then preprocessed, anonymized, and stored securely in Azure Blob Storage. Blockchain smart contracts manage data access, ensuring only authorized specialists can retrieve and analyze the scans. Azure Machine Learning is used to train and deploy state-of-the-art machine learning models for cancer classification. Evaluation Metrics: The framework’s performance is evaluated using metrics such as accuracy, precision, recall, and F1-score, demonstrating the effectiveness of the integrated approach in enhancing diagnostic accuracy and data security. Results: The proposed framework achieves an impressive accuracy of 100% for lung and colon cancer classification using DenseNet, ResNet50, and MobileNet models with different split ratios (70–30, 80–20, 90–10). The F1-score and k-fold cross-validation accuracy (5-fold and 10-fold) also demonstrate exceptional performance, with values exceeding 99.9%. Real-time notifications and secure remote consultations enhance the efficiency and transparency of the diagnostic process, contributing to better patient outcomes and streamlined cancer care management. Full article
18 pages, 2901 KiB  
Article
Comparative Study of Back-Propagation Artificial Neural Network Models for Predicting Salinity Parameters Based on Spectroscopy Under Different Surface Conditions of Soda Saline–Alkali Soils
by Yating Jing, Xuelin You, Mingxuan Lu, Zhuopeng Zhang, Xiaozhen Liu and Jianhua Ren
Agronomy 2024, 14(10), 2407; https://doi.org/10.3390/agronomy14102407 (registering DOI) - 17 Oct 2024
Abstract
Soil salinization typically exerts a highly negative influence on soil productivity, crop yields, and ecosystem balance. As a typical region afflicted by soil salinization, the soda saline–alkali soils in the Songnen Plain of China demonstrate a clear cracking phenomena. Nevertheless, the overall spectral [...] Read more.
Soil salinization typically exerts a highly negative influence on soil productivity, crop yields, and ecosystem balance. As a typical region afflicted by soil salinization, the soda saline–alkali soils in the Songnen Plain of China demonstrate a clear cracking phenomena. Nevertheless, the overall spectral response to the cracked soil surface has scarcely been studied. This study intends to study the impact of salt parameters on the soil cracking process and enhance the spectral measurement method used for cracked salt-affected soil. To accomplish this goal, a controlled desiccation cracking experiment was carried out on saline soil samples. A gray-level co-occurrence matrix (GLCM) was calculated for the contrast (CON) texture feature to measure the extent of cracking in the dried soil samples. Additionally, spectroscopy measurements were conducted under different surface conditions. Principal component analysis (PCA) was subsequently performed to downscale the spectral data for band integration. Subsequently, the prediction accuracy of back-propagation artificial neural network (BP-ANN) models developed from the principal components of spectral reflectance was compared for different salt parameters. The results reveal that salt content is the dominant factor determining the cracking process in salt-affected soils, and that cracked soil samples had the highest model prediction accuracy for different salt parameters rather than uncracked blocks and 2 mm comparison soil samples. Furthermore, BP-ANN prediction models combining spectral response and CON were further developed, which can significantly enhance the prediction accuracy of different salt parameters with R2 values of 0.93, 0.91, and 0.74 and a ratio of prediction deviation (RPD) of 3.68, 3.26, and 1.72 for soil salinity, electrical conductivity (EC), and pH, respectively. These findings provide valuable insights into the cracking mechanism in salt-affected soils, thereby advancing the field of hyperspectral remote sensing for monitoring soil salinization. Furthermore, this study also aids in enhancing the design of spectral measurements for saline–alkali soils and is also helpful for local soil remediation with supporting data. Full article
(This article belongs to the Special Issue Crop Improvement and Cultivation in Saline-Alkali Soils)
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<p>Study area and distribution of sampling points.</p>
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<p>Measurements of some soil salinity parameters in this study: (<b>a</b>) soil suspension; (<b>b</b>) pH measurement; (<b>c</b>) EC measurement.</p>
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<p>The pre-processing process of crack image standardization. (<b>a</b>) Standard photograph of cracked soil sample; (<b>b</b>) calibration plate image; (<b>c</b>) colorful crack image; (<b>d</b>) grayscale crack image; (<b>e</b>) binary crack image; (<b>f</b>) inversion of binary crack image.</p>
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<p>Measurement process of spectral reflectance of soil samples under different surface conditions. (<b>a</b>) cracked sample as a whole; (<b>b</b>) local non-cracked block area; (<b>c</b>) comparison sample with a particle size of 2 mm.</p>
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<p>A simple schematic diagram of the BP-ANN.</p>
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<p>Reflectance curves under different surface conditions: (<b>a</b>) 2 mm comparison soil samples; (<b>b</b>) uncracked blocks; (<b>c</b>) overall cracked soil samples; (<b>d</b>) reflectance of a typical soil sample.</p>
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<p>Principal component scores under different surface states: (<b>a</b>) 2 mm comparison soil samples; (<b>b</b>) uncracked blocks; (<b>c</b>) overall cracked soil samples.</p>
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<p>Correlation coefficient curve between spectral reflectance and salt parameters: (<b>a</b>) 2 mm comparison soil sample; (<b>b</b>) uncracked blocks; (<b>c</b>) cracked soil samples.</p>
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<p>Scatter points between measured and predicted salt parameters. (<b>a1</b>–<b>a4</b>) Total salinity; (<b>b1</b>–<b>b4</b>) EC; (<b>c1</b>–<b>c4</b>) pH; (<b>a1</b>,<b>b1</b>,<b>c1</b>) the 2 mm comparison soil samples; (<b>a2</b>,<b>b2</b>,<b>c2</b>) uncracked blocks; (<b>a3</b>,<b>b3</b>,<b>c3</b>) cracked soil samples; (<b>a4</b>,<b>b4</b>,<b>c4</b>) combined with CON.</p>
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27 pages, 8508 KiB  
Article
Towards a Modern and Sustainable Sediment Management Plan in Mountain Catchment
by Alessio Cislaghi, Emanuele Morlotti, Vito Giuseppe Sacchetti, Dario Bellingeri and Gian Battista Bischetti
GeoHazards 2024, 5(4), 1125-1151; https://doi.org/10.3390/geohazards5040053 (registering DOI) - 17 Oct 2024
Abstract
Sediment management is fundamental for managing mountain watercourses and their upslope catchment. A multidisciplinary approach—not limited to the discipline of hydraulics—is necessary for investigating the alterations in sediment transport along the watercourse by detecting those reaches dominated by erosion and deposition processes, by [...] Read more.
Sediment management is fundamental for managing mountain watercourses and their upslope catchment. A multidisciplinary approach—not limited to the discipline of hydraulics—is necessary for investigating the alterations in sediment transport along the watercourse by detecting those reaches dominated by erosion and deposition processes, by quantifying the sediment volume change, by assessing the functionality of the existing torrent control structures, and by delimitating the riparian vegetation patches. To pursue these goals, specific continuous monitoring is essential, despite being extremely rare in mountain catchments. The present study proposed an integrated approach to determine the hydro-morphological–sedimentological–ecological state of a mountain watercourse though field- and desk-based analyses. Such an integral approach includes a rainfall–runoff model, a morphological change analysis and the application of empirical formulations for estimating peak discharge, mobilizable sediment/large wood volume and watercourse hydraulic capacity, at reach and catchment scales. The procedure was tested on the Upper Adda River catchment (North Italy). The results identified where and with what priority maintenance and monitoring activities must be carried out, considering sediment regime, torrent control structures and vegetation. This study is an example of how it is possible to enhance all existing information through successive qualitative and quantitative approximations and to concentrate new resources (human and economic) on specific gaps, for drafting a scientifically robust and practical sediment management plan. Full article
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<p>Location of the surveyed 12 km of Adda River flowing north to south, in the Upper Valtellina (Lombardy, North Italy).</p>
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<p>Framework of the hydro–geo-morphological, sedimentological and ecological integrated analysis (HySEcA), on which basis operational and monitoring measures are proposed in the sediment management plan.</p>
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<p>Photographs of transverse torrent control structures that show the four conditions of the Loss of Functionality Index (<span class="html-italic">LoFI</span>) according to the percentage of spillway occupied by the sediment. Value 1, or Low, indicates a spillway covered for less than 50%; Value 2, or Medium-low, indicates a coverage between 50 and 75%; Value 3, or Medium-high, indicates a coverage between 75 and 90%; and Value 4, or High, indicates a coverage more than 90%.</p>
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<p>Photographs of riparian vegetation according to colonization density (negligible, low, medium and high).</p>
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<p>The identification of 14 reaches (from 4A to 8A) and 28 subcatchments (from 4A_1 to 8A_7) for the study area.</p>
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<p>The locations and functionality assessment of the inspected transverse torrent control structures along the surveyed watercourse.</p>
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<p>The proposed framework to draft a modern and sustainable sediment management plan.</p>
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<p>Locations of retention check dams and retention basins in the study area.</p>
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<p>Catchment classification based on the hydrological and sediment transport processes using the discriminating limits of the different categories according to Wilford et al. (2004) [<a href="#B97-geohazards-05-00053" class="html-bibr">97</a>].</p>
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<p>Relationships between the Melton Ratio and the mean value of connectivity index of all subcatchments of the study area.</p>
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<p>Flowchart of appropriate monitoring activities for integrating the sediment management plan.</p>
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17 pages, 387 KiB  
Review
Rapid Molecular Diagnostics in Vulvovaginal Candidosis
by Karolina Akinosoglou, Georgios Schinas, Despoina Papageorgiou, Eleni Polyzou, Zoe Massie, Sabriye Ozcelik, Francesca Donders and Gilbert Donders
Diagnostics 2024, 14(20), 2313; https://doi.org/10.3390/diagnostics14202313 - 17 Oct 2024
Abstract
Background/Objectives: Vulvovaginal candidosis (VVC) is a common condition among women, with current diagnostic methods relying on clinical evaluation and laboratory testing. These traditional methods are often limited by the need for specialized training, variable performance, and lengthy diagnostic processes, leading to delayed treatment [...] Read more.
Background/Objectives: Vulvovaginal candidosis (VVC) is a common condition among women, with current diagnostic methods relying on clinical evaluation and laboratory testing. These traditional methods are often limited by the need for specialized training, variable performance, and lengthy diagnostic processes, leading to delayed treatment and inappropriate antifungal use. This review evaluates the efficacy of molecular diagnostic tools for VVC and provides guidance on their application in clinical practice. Methods: A literature search was conducted using PubMed to identify studies evaluating rapid diagnostic tests specifically for vulvovaginal Candida isolates. Inclusion criteria focused on studies utilizing molecular diagnostics for the detection of Candida species in VVC. Articles discussing non-vaginal Candida infections, non-English studies, and animal or in vitro research were excluded. Results: Twenty-three studies met the inclusion criteria, predominantly evaluating nucleid acid amplification tests/polymerase chain reaction (NAAT/PCR) assays and DNA probes. PCR/NAAT assays demonstrated high sensitivity and specificity (>86%) for VVC diagnosis, outperforming conventional diagnostic methods. Comparatively, DNA probes, while simpler, exhibited lower sensitivity. The included studies were mostly observational, with only one randomized controlled trial. Emerging diagnostic technologies, including artificial intelligence and integrated testing models, show promise for improving diagnostic precision and clinical outcomes. Conclusions: Molecular diagnostics offer a significant improvement in VVC management, though traditional methods remain valuable in resource-limited settings. Full article
(This article belongs to the Section Diagnostic Microbiology and Infectious Disease)
10 pages, 2679 KiB  
Article
MicroED: Unveiling the Structural Chemistry of Plant Biomineralisation
by Damian Trzybiński, Marcin Ziemniak, Barbara Olech, Szymon Sutuła, Tomasz Góral, Olga Bemowska-Kałabun, Krzysztof Brzost, Małgorzata Wierzbicka and Krzysztof Woźniak
Molecules 2024, 29(20), 4916; https://doi.org/10.3390/molecules29204916 - 17 Oct 2024
Abstract
Plants are able to produce various types of crystals through metabolic processes, serving functions ranging from herbivore deterrence to photosynthetic efficiency. However, the structural analysis of these crystals has remained challenging due to their small and often imperfect nature, which renders traditional X-ray [...] Read more.
Plants are able to produce various types of crystals through metabolic processes, serving functions ranging from herbivore deterrence to photosynthetic efficiency. However, the structural analysis of these crystals has remained challenging due to their small and often imperfect nature, which renders traditional X-ray diffraction techniques unsuitable. This study explores the use of Microcrystal Electron Diffraction (microED) as a novel method for the structural analysis of plant-derived microcrystals, focusing on Armeria maritima (Milld.), a halophytic plant known for its biomineralisation capabilities. In this study, A. maritima plants were cultivated under controlled laboratory conditions with exposure to cadmium and thallium to induce the formation of crystalline deposits on their leaf surfaces. These deposits were analysed using microED, revealing the presence of sodium chloride (halite), sodium sulphate (thénardite), and calcium sulphate dihydrate (gypsum). Our findings highlight the potential of microED as a versatile tool in plant science, capable of providing detailed structural insights into biomineralisation processes, even from minimal and imperfect crystalline samples. The application of microED in this context not only advances the present understanding of A. maritima’s adaptation to saline environments but also opens new avenues for exploring the structural chemistry of biomineralisation in other plant species. Our study advocates for the broader adoption of microED in botanical research, especially when dealing with challenging crystallographic problems. Full article
(This article belongs to the Section Molecular Structure)
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<p><span class="html-italic">Armeria maritima</span> is depicted as follows: (<b>a</b>) a general view of the plant in the flowering phase. This perennial herbaceous plant is characterised by its narrow lanceolate leaves arranged in a rosette and its purple capitate inflorescences (photo: Arnstein Rønning); (<b>b</b>) SEM image showing the salt gland (marked by red arrow) and the polycrystalline material excreted by the gland.</p>
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<p>Results of the microED analysis of crystals from the surface of <span class="html-italic">A. maritima</span> leaves (the measured microcrystal, an exemplary frame showing the diffraction signal, and the crystal packing of the compound): (<b>a</b>) sodium chloride (halite), (<b>b</b>) sodium sulphate (thénardite), and (<b>c</b>) calcium sulphate dihydrate (gypsum).</p>
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<p>The asymmetric unit of the crystal lattice of the investigated compounds—sodium chloride (<b>a</b>), sodium sulphate (<b>b</b>), and calcium sulphate dehydrate (<b>c</b>)—with the atom labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.</p>
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<p>Computational analysis of CaSO<sub>4</sub> 2H<sub>2</sub>O system. (<b>a</b>) Analysis of hydrogen bonds with isosurfaces of ELI-D (2.7) along <span class="html-italic">x</span>-90° and <span class="html-italic">z</span>-90° axis. (<b>b</b>) Large basins of ELI-D indicate the regions in which the likelihood of finding an electron pair relative to the whole molecular system is high. A visible basin of ELI-D along a hydrogen bond indicates a significant covalent contribution. ELI-D is a dimensionless quantity. (<b>c</b>) Isosurfaces of ED Laplacian along x-90° axis (0.5 e A<sup>−5</sup>). (<b>d</b>) Contour map of ED Laplacian along a hydrogen bond.</p>
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14 pages, 7220 KiB  
Article
Transcriptome Remodeling in Arabidopsis: A Response to Heterologous Poplar MSL-lncRNAs Overexpression
by Jinyan Mao, Qianhua Tang, Huaitong Wu and Yingnan Chen
Plants 2024, 13(20), 2906; https://doi.org/10.3390/plants13202906 - 17 Oct 2024
Abstract
Stamens are vital reproductive organs in angiosperms, essential for plant growth, reproduction, and development. The genetic regulation and molecular mechanisms underlying stamen development are, however, complex and varied among different plant species. MSL-lncRNAs, a gene specific to the Y chromosome of Populus deltoides [...] Read more.
Stamens are vital reproductive organs in angiosperms, essential for plant growth, reproduction, and development. The genetic regulation and molecular mechanisms underlying stamen development are, however, complex and varied among different plant species. MSL-lncRNAs, a gene specific to the Y chromosome of Populus deltoides, is predominantly expressed in male flower buds. Heterologous expression of MSL-lncRNAs in Arabidopsis thaliana resulted in an increase in both stamen and anther count, without affecting pistil development or seed set. To reveal the molecular regulatory network influenced by MSL-lncRNAs on stamen development, we conducted transcriptome sequencing of flowers from both wild-type and MSL-lncRNAs-overexpressing Arabidopsis. A total of 678 differentially expressed genes were identified between wild-type and transgenic Arabidopsis. Among these, 20 were classified as transcription factors, suggesting a role for these regulatory proteins in stamen development. GO enrichment analysis revealed that the differentially expressed genes were significantly associated with processes such as pollen formation, polysaccharide catabolic processes, and secondary metabolism. KEGG pathway analysis indicated that MSL-lncRNAs might promote stamen development by upregulating genes involved in the phenylpropanoid biosynthesis pathway. The top three upregulated genes, all featuring the DUF295 domain, were found to harbor an F-box motif at their N-termini, which is implicated in stamen development. Additionally, in transgenic Arabidopsis flowers, genes implicated in tapetum formation and anther development were also observed to be upregulated, implying a potential role for MSL-lncRNAs in modulating pollen development through the positive regulation of these genes. The findings from this study establish a theoretical framework for elucidating the genetic control exerted by MSL-lncRNAs over stamen and pollen development. Full article
(This article belongs to the Section Plant Molecular Biology)
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<p>Transcriptome data analysis. (<b>a</b>) Correlation analysis among six samples. (<b>b</b>) Bar Chart of the number of differentially expressed genes. (<b>c</b>) Cluster analysis of DEGs collected in six samples. The normalized FPKM expression is indicated by the row Z-score, where red represents upregulated genes and blue represents downregulated genes in every sample.</p>
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<p>Bar chart displaying the top three upregulated and bottom three downregulated genes based on log-fold change (logFC) values.</p>
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<p>Validation of RNA-seq results using qRT-PCR analysis. The top three histograms depict the relative expression levels from qRT-PCR, with fold change values shown as the mean ± standard deviation across three independent experiments. The bottom three histograms illustrate the FPKM values derived from RNA-seq data.</p>
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<p>Heatmap of differentially expressed transcription factors based on FPKM values. Normalized transcription factor expression is indicated by the row Z-score where red represents upregulated genes and blue represents downregulated genes.</p>
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<p>GO enrichment analysis of DEGs. (<b>a</b>) Biological process enrichment analysis. (<b>b</b>) Cellular component enrichment analysis. (<b>c</b>) Molecular function enrichment analysis.</p>
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<p>KEGG enrichment analysis of DEGs. The <span class="html-italic">X</span>-axis represents the number of DEGs enriched in specific metabolic pathways. The color gradient from red to blue denotes adjusted <span class="html-italic">p</span>-values: red for the smallest (0.00), purple for moderate (0.10), and blue for the largest (0.20).</p>
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<p>Differential expression levels of genes related to phenylpropanoid biosynthesis identified by KEGG annotation. The enzymes marked with the red boxes are associated with the upregulation of proteins, while those marked with the green boxes are associated with the downregulation of proteins.</p>
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<p>Protein–protein interaction network in <span class="html-italic">Arabidopsis</span>. Each node represents a protein, with the protein name displayed inside. Arcs denote interactions between proteins, and color coding reflects interaction strength: red for high, orange for moderate, and yellow for low interaction degrees.</p>
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14 pages, 2083 KiB  
Article
A Dynamic Game Model for Emergency Resource Managers and Compound Disasters Induced by Heavy Rainstorms
by Yi Wu, Xuezhi Tan, Haoyuan Mo, Xudong Li, Yin Zhang, Fang Yang, Lixiang Song, Yong He and Xiaohong Chen
Water 2024, 16(20), 2959; https://doi.org/10.3390/w16202959 - 17 Oct 2024
Abstract
Under the impact of global climate change and human activities, the occurrence of compound disasters such as cascading landslides and flash floods caused by heavy rainfall is increasing. In response to these compound disaster events, it is important to simultaneously transport emergency resources [...] Read more.
Under the impact of global climate change and human activities, the occurrence of compound disasters such as cascading landslides and flash floods caused by heavy rainfall is increasing. In response to these compound disaster events, it is important to simultaneously transport emergency resources from multiple emergency rescue points to the disaster sites to promptly control the cascading development of disasters and reduce the areas affected by the disasters and associated adverse impacts. This study proposes a dynamic game model for emergency resources dispatch to comprehensively consider the evolution of the compound disaster states and the timely dispatch of emergency resources from the rescue points to the disaster site. The dynamic game model is exemplarily applied to the emergency resource dispatch for a rainstorm-induced compound disaster that occurs in the Guangdong–Hong Kong–Macao Greater Bay Area (GBA). Starting with the analysis of the characteristics of emergency resource management and the attributes of a cascading of heavy rainstorms, landslides, and flash floods, the game model simulates the dynamic game process between the “disaster state” and the “emergency resource manager” in the rescue operations. A two-stage dynamic game model can support decision-making with the objectives of minimal time cost and sufficient resource dispatch for the disaster sites. Game results show that the united emergency resource dispatch in the three GBA metropolitan areas can efficiently respond to compound disasters that occur within the GBA metropolitan area. The dynamic game model could be extended for compound disaster emergency responses with more complicated compound effects and resource constraints. Full article
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<p>Decision-making diagram of emergency resources dispatch for compound disaster events in the dynamic game framework. The dotted lines in the diagram are the “optimal schemes” evaluated by emergency resource managers in different disaster states.</p>
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<p>A diagram of the two-stage dynamic game process for compound disaster events.</p>
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<p>Overview of Guangdong–Hong Kong–Macao Greater Bay Area (GBA). (<b>a</b>), Regional overview map of China. (<b>b</b>), Regional overview map of Guangdong Province. (<b>c</b>), Three major metropolitan area of the GBA, with green representing “GFZ” metropolitan areas, blue representing “SDH” metropolitan areas and yellow representing “ZZJ” metropolitan areas.</p>
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<p>GBA metropolitan areas and resource transportation time cost for compound disasters in “GFZ” (green), “SDH” (blue), and “ZZJ” (yellow) metropolitan areas.</p>
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<p>The two-stage game processes and associated payments for emergency resource dispatch in a rainstorm-induced compound disaster.</p>
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