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21 pages, 3443 KiB  
Article
A New Approach for CRISPR/Cas9 Editing and Selection of Pathogen-Resistant Plant Cells of Wine Grape cv. ‘Merlot’
by Anastasia Fizikova, Zhanneta Tukhuzheva, Lada Zhokhova, Varvara Tvorogova and Ludmila Lutova
Int. J. Mol. Sci. 2024, 25(18), 10011; https://doi.org/10.3390/ijms251810011 (registering DOI) - 17 Sep 2024
Abstract
Grape is one of the most economically significant berry crops. Owing to the biological characteristics of grapes, such as the long juvenile period (5–8 years), high degree of genome heterozygosity, and the frequent occurrence of inbreeding depression, homozygosity during crossbreeding leads to loss [...] Read more.
Grape is one of the most economically significant berry crops. Owing to the biological characteristics of grapes, such as the long juvenile period (5–8 years), high degree of genome heterozygosity, and the frequent occurrence of inbreeding depression, homozygosity during crossbreeding leads to loss of varietal characteristics and viability. CRISPR/Cas editing has become the tool of choice for improving elite technical grape varieties. This study provides the first evidence of a decrease in the total fraction of phenolic compounds and an increase in the concentration of peroxide compounds in grape callus cells upon the addition of chitosan to the culture medium. These previously unreported metabolic features of the grape response to chitosan have been described and used for the first time to increase the probability of selecting plant cells with MLO7 knockout characterised by an oxidative burst in response to the presence of a pathogen modulated by chitosan in the high-metabolite black grape variety ‘Merlot’. This was achieved by using a CRISPR/Cas9 editing vector construction with the peroxide sensor HyPer as a reporter. This research represents the first CRISPR/Cas9 editing of ‘Merlot’, one of the most economically important elite technical grape varieties. Full article
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Figure 1
<p>Comparison of the effectiveness of grapevine leaf bud sterilisation using sodium hypochlorite (NaOCl) and polyhexamethylene guanidine hydrochloride (PHMG); the statistical significance of the observed differences was assessed using a two-tailed Mann–Whitney U test: (<b>a</b>) Histogram comparing the percentages of sterilised explants on day 4 of incubation: the analysis revealed a statistically significant difference, with: * ‘Merlot’ PHMG decontamination having a higher percentage of sterilised explants compared with ‘Merlot’ NaOCl decontamination approach (z = −2.69, <span class="html-italic">p</span> = 0.008); * ‘Malbec’ PHMG decontamination having a higher percentage of sterilised explants compared with ‘Malbec’ NaOCl decontamination approach (z = −2.74, <span class="html-italic">p</span> = 0.008); (<b>b</b>) Table comparing the two sterilisation methods based on percentages of contaminated, dead, and surviving explants after 3 weeks of incubation: the relative values marked with the same letter were compared with each other and showed statistically significant differences: (a) the difference was statistically significant at <span class="html-italic">p</span> = 0.006 (z = −2.73); (b) the difference was statistically significant at <span class="html-italic">p</span> = 0.007 (z = −2.69); (c) the difference was statistically significant at <span class="html-italic">p</span> = 0.042 (z = −2.03); (d) the difference was statistically significant at <span class="html-italic">p</span> = 0.005 (z = −2.79); (e) the difference was statistically significant at <span class="html-italic">p</span> = 0.008 (z = −2.69); (f) the difference was statistically significant at <span class="html-italic">p</span> = 0.008 (z = −2.74); (<b>c</b>) Circular chart showing the percentages of surviving (blue) and dead (orange) explants: The exact percentages can be seen in (<b>b</b>) of <a href="#ijms-25-10011-f001" class="html-fig">Figure 1</a>: parts of the rings corresponding to contaminated samples are not coloured.</p>
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<p>Comparison of the phenotypes of cv. ‘Merlot’, ‘Chardonnay’, ‘Malbec’, and ‘Riesling’ cuttings on PRM and 1M–4M media: (<b>a</b>) Comparison of the growth parameters of vine cuttings of the varieties ‘Merlot’, ‘Chardonnay’, ‘Malbec’, and ‘Riesling’ on PRM medium over a period of one month, without any subculturing, showed significant differences in shoot height, number of nodes, and root lengths across the different varieties. However, there were no statistically significant differences observed in the number of roots formed by the ‘Merlot’, ‘Chardonnay’, ‘Malbec’, and ‘Riesling’ cuttings (<a href="#ijms-25-10011-f002" class="html-fig">Figure 2</a>a). (<b>b</b>) Polar area plot illustrating the range of phenotypes observed when cultivating grapevine cuttings of the ‘Merlot’, ‘Chardonnay’, ‘Malbec’, and ‘Riesling’ varieties on PRM medium after three weeks of cultivation, showing a statistically significant preference for growth on PRM medium (Fisher test, F = 625, <span class="html-italic">p</span> &lt; 0.0001). The polar area plots (<b>c</b>–<b>f</b>) show the phenotypic responses of ‘Merlot’, ‘Chardonnay’, ‘Malbec’, and ‘Riesling’ grapevine cuttings grown on 1M–4M media after three weeks. A statistically significant difference (F = 841, <span class="html-italic">p</span> &lt; 0.001) was observed in the accumulation of anthocyanins in black grape varieties (‘Merlot’ and ‘Malbec’) compared with white grape varieties (‘Chardonnay’ and ‘Riesling’) on 1M–4M media. This difference was also observed in the development of chlorosis in ‘Chardonnay’ cuttings on 1M media (F = 841, <span class="html-italic">p</span> &lt; 0.001). Furthermore, a significant difference (F = 169, <span class="html-italic">p</span> = 0; F = 100, <span class="html-italic">p</span> = 0 for 2M and 3M media, respectively) was observed in the drying of buds in white grape varieties compared with black grape varieties on 1M, 2M, and 3M media.</p>
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<p>Induction of plant immune response by chitosan in ‘Merlot’ grapevine suspension callus: (<b>a</b>) box plot showing total phenolic metabolite content in ‘Merlot’ grapevine suspension callus with (navy blue) and without (cornflower blue) chitosan treatment: <span class="html-italic">y</span>-axis: total phenolic metabolite content (µg per probe), <span class="html-italic">x</span>-axis: treatment (control, chitosan), significant difference observed between groups (<span class="html-italic">t</span>-test, <span class="html-italic">p</span> &lt; 0.001); (<b>b</b>) scatter plot showing correlation between total phenolic metabolite content in ‘Merlot’ grapevine suspension callus in two samples with and without chitosan treatment (Rs = 0.6063 <span class="html-italic">p</span> = 0.02 (98% statistical significance level) df = 0; R<sup>2</sup> = 0.39); (<b>c</b>) calibration curve for the determination of the total phenolic metabolite content: <span class="html-italic">y</span>-axis: absorbance at 700 nm; <span class="html-italic">x</span>-axis: total phenolic metabolite concentration (µg per probe), R<sup>2</sup> = 0.9702; (<b>d</b>) box plot showing the average intensity values of the number of fluorescent objects (sensor for peroxide compounds (HyPer)) in ‘Merlot’ grape callus cells with (navy blue) and without (cornflower blue) chitosan addition. Measurements were taken at 9 points using a spiral imaging strategy with the Incucyte live cell analysis system (500 nm). A significant difference was observed between the groups (U-test: U = −2.61, <span class="html-italic">p</span> &lt; 0.001). (<b>e</b>) Scatter plot shows the correlation between the content of fluorescent objects in ‘Merlot’ samples with and without chitosan treatment (Rs = −0.5991 <span class="html-italic">p</span> = 0.05 (95% statistical significance level) df = 0; R<sup>2</sup> = 0.2).</p>
Full article ">Figure 4
<p>Increased levels of nonsense, missense, and synonymous mutations following agrobacterial transfections with editing vectors: (<b>a</b>) Box plot representing the percentage of nonsense, missense, and synonymous mutations occurring after <span class="html-italic">Agrobacterium</span>-mediated transfections (AT) with editing vectors. Cells that underwent <span class="html-italic">Agrobacterium</span>-mediated transfection without gRNA were used as a control. The significance of the observed differences was analysed using the Mann–Whitney test: (Z = −2.37, <span class="html-italic">p</span> &lt; 0.05). (<b>b</b>) Scatter plot showing the correlation between control and treated experimental groups. (<b>c</b>) Table showing mutation percentages from primary experiments, indicating vector types, explants used, and transfection methods; mutation frequencies in these experiments were assessed using Mi-Seq NGS; (<b>d</b>) Microscopy of one of the explants used in this study: grapevine protoplasts of the variety ‘Merlot’; bright field, scale bar 50 μm.</p>
Full article ">Figure 5
<p>Evaluation of the CRISPR/Cas9 gene-editing efficiency of <span class="html-italic">MLO7</span> in the grapevine variety ‘Merlot’: (<b>a</b>) Aligned nucleotide sequences of the <span class="html-italic">MLO7</span> gene: the region where the Cas9 nuclease is most likely to induce a break in the sequence is marked by a black dashed line. Blue dashed lines indicate correspondence with the unedited <span class="html-italic">MLO7</span> sequence, the guide RNA region is highlighted in blue, the PAM site is marked in red, and the localisation of the <span class="html-italic">BglI</span> restriction endonuclease recognition site used for <span class="html-italic">MLO7</span> PCR product screening is indicated; (<b>b</b>) Fluorescence microscopy of callus cells transfected with the editing construct expressing the hydrogen peroxide sensor HyPer, scale bar 20 μm; (<b>c</b>) Electropherograms of <span class="html-italic">MLO7</span> PCR products and restriction fragments after <span class="html-italic">BglI</span> hydrolysis: from left to right, samples: 1. <span class="html-italic">MLO7</span> non treated; 2. 1 kb DNA ladder (Evrogen); 3. <span class="html-italic">MLO7</span>/<span class="html-italic">BglI</span> (after AT with an editing vector); 4. 1000 bp DNA ladder (Thermo Fisher, Waltham, MA, USA); 5. 1 kb DNA ladder (Evrogen); 6. <span class="html-italic">MLO7</span>/<span class="html-italic">BglI</span> (after AT with an editing vector with chitosan treatment of explants); (<b>d</b>) Densitogram analysis of electrophoregrams to quantify the <span class="html-italic">BglI</span>-hydrolysed <span class="html-italic">MLO7</span> sequence (36.3% ± 0.006) (GelAnalyzer): * the difference was statistically significant at <span class="html-italic">p</span> &lt; 0.05 (Z = –2.31). The ‘low phenolic metabolite’ (new transfection and selection approach with chitosan supplementary) had a higher percentage of BglI site loss (edited) <span class="html-italic">MLO7</span> sequence (or KO <span class="html-italic">MLO7</span>) compared with the standard CRISPR/Cas9 editing and <span class="html-italic">Agrobacterium</span>-mediated transfection approach.</p>
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10 pages, 1432 KiB  
Article
Investigating Associations between Horse Hoof Conformation and Presence of Lameness
by Fernando Mata, Inês Franca, José Araújo, Gustavo Paixão, Kirsty Lesniak and Joaquim Lima Cerqueira
Animals 2024, 14(18), 2697; https://doi.org/10.3390/ani14182697 (registering DOI) - 17 Sep 2024
Abstract
Hoof trimming and shoeing determine the horse’s hoof shape and balance. Hoof conformation plays a crucial role in limb biomechanics and can consequently prevent or predispose to injury. This study investigated the relationship between the morphometric characteristics of the horse’s hoof, specifically, the [...] Read more.
Hoof trimming and shoeing determine the horse’s hoof shape and balance. Hoof conformation plays a crucial role in limb biomechanics and can consequently prevent or predispose to injury. This study investigated the relationship between the morphometric characteristics of the horse’s hoof, specifically, the dorsal hoof wall angle (DHWA), the coronet band circumference (CBC), and lameness in 73 horses categorised as undertaking either show jumping, dressage, or riding school activities. Results from logistic regression indicated that horses with either a combination of acute DHWA with large CBC, or more upright feet with larger DHWA and smaller CBC have higher probabilities of lameness. Show jumping and dressage horses showed a higher prevalence of lameness. Hoof morphometry should be monitored, and podiatric interventions should be regularly scheduled for the maintenance of correct hoof conformation to prevent injury. This study suggests that an aligned hoof–pastern axis managed by a DHWA of around 50 degrees may prevent lameness, with special emphasis on horses in dressage and show jumping activities. On the other hand, we can also speculate that the disturbed axis alignment of DHWA may be a cause of lameness. Full article
(This article belongs to the Special Issue EMG and Biomechanical Analysis of the Equine Gait)
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<p>The distal limb of the horse in sagittal view: (<b>A</b>) correct hoof–pastern axis; (<b>B</b>) broken-back hoof–pastern axis; (<b>C</b>) broken-forward hoof–pastern axis. (Source: the authors).</p>
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<p>Probability of the presence of lameness in horses undertaking riding school activity, as a function of the coronet band circumference (CBC) and the dorsal hoof wall angle (DHWA).</p>
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<p>Probability of the presence of lameness in horses undertaking dressage activity, as a function of the coronet band circumference (CBC) and the dorsal hoof wall angle (DHWA).</p>
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<p>Probability of the presence of lameness in horses undertaking show jumping activity, as a function of the coronet band circumference (CBC) and the dorsal hoof wall angle (DHWA).</p>
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13 pages, 2122 KiB  
Article
Electrophysiological and Behavioral Markers of Hyperdopaminergia in DAT-KO Rats
by Zoia Fesenko, Maria Ptukha, Marcelo M. da Silva, Raquel S. Marques de Carvalho, Vassiliy Tsytsarev, Raul R. Gainetdinov, Jean Faber and Anna B. Volnova
Biomedicines 2024, 12(9), 2114; https://doi.org/10.3390/biomedicines12092114 (registering DOI) - 17 Sep 2024
Abstract
Background/Objectives: Dopamine dysfunction (DA) is a hallmark of many neurological disorders. In this case, the mechanism of changes in dopamine transmission on behavior remains unclear. This study is a look into the intricate link between disrupted DA signaling, neuronal activity patterns, and behavioral [...] Read more.
Background/Objectives: Dopamine dysfunction (DA) is a hallmark of many neurological disorders. In this case, the mechanism of changes in dopamine transmission on behavior remains unclear. This study is a look into the intricate link between disrupted DA signaling, neuronal activity patterns, and behavioral abnormalities in a hyperdopaminergic animal model. Methods: To study the relationship between altered DA levels, neuronal activity, and behavioral deficits, local field potentials (LFPs) were recorded during four different behaviors in dopamine transporter knockout rats (DAT-KO). At the same time, local field potentials were recorded in the striatum and prefrontal cortex. Correlates of LFP and accompanying behavioral patterns in genetically modified (DAT-KO) and control animals were studied. Results: DAT-KO rats exhibited desynchronization between LFPs of the striatum and prefrontal cortex, particularly during exploratory behavior. A suppressive effect of high dopamine levels on the striatum was also observed. Wild-type rats showed greater variability in LFP patterns across certain behaviors, while DAT-KO rats showed more uniform patterns. Conclusions: The decisive role of the synchrony of STR and PFC neurons in the organization of motor acts has been revealed. The greater variability of control animals in certain forms of behavior probably suggests greater adaptability. More uniform patterns in DAT-KO rats, indicating a loss of striatal flexibility when adapting to specific motor tasks. It is likely that hyperdopaminergy in the DAT-KO rat reduces the efficiency of information processing due to less synchronized activity during active behavior. Full article
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Figure 1
<p>Experimental design. (<b>A</b>) Signal measured from STR and PFC electrodes in both KO and WT rats during specific behaviors: exploring, rearing, grooming, and wakefulness/calm. Signals were downsampled, segmented, filtered, and freed from artifacts. (<b>B</b>) The signal coherence and cross-correlation metric between PFC and STR activities were calculated. (<b>C</b>) Power Spectral Density (PSD) was computed using Welch’s technique and used as a feature input for Canonical Discriminant Analysis (CDA). (<b>D</b>) Each PSD can be thought of as a vector in a multidimensional space of frequencies. CDA performs a dimensional reduction conserving linear combinations (CAN1, CAN2, and CAN3) that maximize the correlation of intra-groups. Considering multiple epochs from each ‘behavior × animal type’, cloud clustering can be achieved. The same analysis was carried out with signals from the PFC and STR electrodes for both WT and KO groups. Illustrations of rats adapted from scidraw.io under a Creative Commons license.</p>
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<p>(<b>A</b>) Power spectral densities (PSDs) quantification considering recordings from PFC and STR brain regions of both groups, KO (<span class="html-italic">n</span> = 7) and WT (<span class="html-italic">n</span> = 7). The lines are the averaged PSDs with a 95% confidence interval in a frequency range between 0 and 30 Hz. PSDs are presented in decibels, scaled relative to 1 mV2/Hz to highlight the differences among power spectrum lines. (<b>B</b>) Discriminant canonical analysis (CDA) of PSDs, considering the four types of animal behavior for each separate brain region. (<b>C</b>) Coherence between recordings measured from PFC and STR brain regions in a frequency range between 0 and 30 Hz according to the four types of animal behavior. The plots represent the averaged coherence.</p>
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<p>(<b>A</b>) Cross-correlation between signals recorded from PFC and STR regions of both groups, KO (<span class="html-italic">n</span> = 7) and WT (<span class="html-italic">n</span> = 7), according to each behavior (exploring, rearing, grooming, and wakefulness/calm). The plots represent the averaged cross-correlations of multiple epochs of the associated signals. Time lags along the X axis represent relative negative and positive displacements made between pairs of signals recorded from PFC and STR (each lag corresponds to 1 ms). (<b>B</b>) Statistical tests (<span class="html-italic">t</span>-test, two sample means) were performed comparing the maximum cross-correlation values of each group (left) and its respective lags (right). Asterisks represent a significant difference.</p>
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19 pages, 1519 KiB  
Article
Increasing Population Immunity Prior to Globally-Coordinated Cessation of Bivalent Oral Poliovirus Vaccine (bOPV)
by Nima D. Badizadegan, Steven G. F. Wassilak, Concepción F. Estívariz, Eric Wiesen, Cara C. Burns, Omotayo Bolu and Kimberly M. Thompson
Pathogens 2024, 13(9), 804; https://doi.org/10.3390/pathogens13090804 (registering DOI) - 17 Sep 2024
Viewed by 167
Abstract
In 2022, global poliovirus modeling suggested that coordinated cessation of bivalent oral poliovirus vaccine (bOPV, containing Sabin-strain types 1 and 3) in 2027 would likely increase the risks of outbreaks and expected paralytic cases caused by circulating vaccine-derived polioviruses (cVDPVs), particularly type 1. [...] Read more.
In 2022, global poliovirus modeling suggested that coordinated cessation of bivalent oral poliovirus vaccine (bOPV, containing Sabin-strain types 1 and 3) in 2027 would likely increase the risks of outbreaks and expected paralytic cases caused by circulating vaccine-derived polioviruses (cVDPVs), particularly type 1. The analysis did not include the implementation of planned, preventive supplemental immunization activities (pSIAs) with bOPV to achieve and maintain higher population immunity for types 1 and 3 prior to bOPV cessation. We reviewed prior published OPV cessation modeling studies to support bOPV cessation planning. We applied an integrated global poliovirus transmission and OPV evolution model after updating assumptions to reflect the epidemiology, immunization, and polio eradication plans through the end of 2023. We explored the effects of bOPV cessation in 2027 with and without additional bOPV pSIAs prior to 2027. Increasing population immunity for types 1 and 3 with bOPV pSIAs (i.e., intensification) could substantially reduce the expected global risks of experiencing cVDPV outbreaks and the number of expected polio cases both before and after bOPV cessation. We identified the need for substantial increases in overall bOPV coverage prior to bOPV cessation to achieve a high probability of successful bOPV cessation. Full article
(This article belongs to the Special Issue Human Poliovirus)
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Figure 1
<p>Histogram of bOPV pSIAs in the 720 model subpopulations with intensification *. Abbreviations: bOPV, bivalent OPV, pSIA, preventive supplemental immunization activity. * Pakistan and Afghanistan 6 pSIAs (low coverage areas 7 pSIAs), most of the Democratic Republic of the Congo, Nigeria, and Ethiopia 2–3 pSIAs (low coverage areas 4–7 pSIAs), most of India 3 pSIAs (high-risk areas, including UP and Bihar, 5–7 pSIAs), most of Somalia and South Sudan 2 pSIAs (low-coverage areas 7 pSIAs), most of Ukraine 4 pSIAs (high-risk areas 6 pSIAs), Yemen and Papua New Guinea 6 pSIAs, most of Indonesia 1 pSIA (low coverage areas 3–4 pSIAs), most of the Syrian Arab Republic 1 pSIA (low coverage areas 2–3 pSIAs), most of Bangladesh 3 pSIAs (low coverage areas 5 pSIAs), Côte d’Ivoire, Mauritania, Egypt, and Haiti 4 pSIAs, Philippines 3 pSIAs, 3–4 pSIAs in low-coverage areas in modeled subpopulations that include countries such as: Albania, Algeria, Angola, Armenia, Azerbaijan, Benin, Bosnia and Herzegovina, Botswana, Burkina Faso, Burundi, Cambodia, Cameroon, Central African Republic, Chad, Comoros, Congo, Djibouti, Dominican Republic, El Salvador, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, Gabon, Gambia, Georgia, Ghana, Guatemala, Guinea, Guinea-Bissau, Haiti, Honduras, Kazakhstan, Kyrgyzstan, Kenya, Lao People’s Democratic Republic, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritius, Montenegro, Morocco, Mozambique, Myanmar, Namibia, Nicaragua, Niger, Papua New Guinea, Philippines, Republic of Moldova, Rwanda, Senegal, Serbia, Sierra Leone, Somalia, State of Palestine, Sudan, Tajikistan, The Former Yugoslavian Republic of Macedonia, Togo, Tunisia, Turkmenistan, Uganda, Ukraine, United Republic of Tanzania, Viet Nam, Zambia, and Zimbabwe. The global model includes some of these countries due to risks posed by other countries in the same block. Generally, countries with WPV1 R<sub>0</sub> ≥ 10 with any levels of coverage would likely benefit from some pSIAs (e.g., the inclusion of pSIAs in India and Bangladesh), and all countries with subpopulations with coverage less than &lt;60% would likely need 3–4 pSIAs. The model does not provide refined estimates of the number of pSIAs and may not fully account for differential decreases in coverage that occurred during COVID-19 and persist in some countries.</p>
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<p>Expected annual polio cases for global bivalent oral poliovirus vaccine (bOPV) cessation occurring in 2027 and outbreak response for using monovalent OPV (mOPV) (assumptions and result from the prior study [<a href="#B48-pathogens-13-00804" class="html-bibr">48</a>]), or using updated assumptions for novel OPV (nOPV). Outbreak response scenarios for nOPV (baseline) assume nOPV2 best or nOPV2 worst from 2022 on, and outbreak response for type 1 or 3 using Sabin-strain bOPV until 2027, and then either homotypic nOPV best or nOPV worst for types 1 and 3 (see text and prior studies [<a href="#B48-pathogens-13-00804" class="html-bibr">48</a>,<a href="#B49-pathogens-13-00804" class="html-bibr">49</a>] for assumed characteristics of nOPV best and nOPV worst bounds).</p>
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<p>Expected annual polio cases for global bivalent OPV (bOPV) cessation in 2027 and outbreak response for type 2 using novel OPV (nOPV) with either nOPV2 best or nOPV2 worst from 2022 on, and outbreak response for type 1 or 3 using Sabin-strain bOPV until 2027, and then either homotypic nOPV best or nOPV worst (see text and prior studies [<a href="#B48-pathogens-13-00804" class="html-bibr">48</a>,<a href="#B49-pathogens-13-00804" class="html-bibr">49</a>] for assumed characteristics of nOPV best and nOPV worst bounds) after bOPV cessation without (baseline) and with additional preventive supplemental immunization activities using bOPV (i.e., intensification) added in some model subpopulations (see text and <a href="#pathogens-13-00804-f001" class="html-fig">Figure 1</a>).</p>
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30 pages, 4353 KiB  
Review
Is Seeing Believing? A Practitioner’s Perspective on High-Dimensional Statistical Inference in Cancer Genomics Studies
by Kun Fan, Srijana Subedi, Gongshun Yang, Xi Lu, Jie Ren and Cen Wu
Entropy 2024, 26(9), 794; https://doi.org/10.3390/e26090794 - 16 Sep 2024
Viewed by 357
Abstract
Variable selection methods have been extensively developed for and applied to cancer genomics data to identify important omics features associated with complex disease traits, including cancer outcomes. However, the reliability and reproducibility of the findings are in question if valid inferential procedures are [...] Read more.
Variable selection methods have been extensively developed for and applied to cancer genomics data to identify important omics features associated with complex disease traits, including cancer outcomes. However, the reliability and reproducibility of the findings are in question if valid inferential procedures are not available to quantify the uncertainty of the findings. In this article, we provide a gentle but systematic review of high-dimensional frequentist and Bayesian inferential tools under sparse models which can yield uncertainty quantification measures, including confidence (or Bayesian credible) intervals, p values and false discovery rates (FDR). Connections in high-dimensional inferences between the two realms have been fully exploited under the “unpenalized loss function + penalty term” formulation for regularization methods and the “likelihood function × shrinkage prior” framework for regularized Bayesian analysis. In particular, we advocate for robust Bayesian variable selection in cancer genomics studies due to its ability to accommodate disease heterogeneity in the form of heavy-tailed errors and structured sparsity while providing valid statistical inference. The numerical results show that robust Bayesian analysis incorporating exact sparsity has yielded not only superior estimation and identification results but also valid Bayesian credible intervals under nominal coverage probabilities compared with alternative methods, especially in the presence of heavy-tailed model errors and outliers. Full article
(This article belongs to the Special Issue Bayesian Learning and Its Applications in Genomics)
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<p>A brief history of frequentist and Bayesian variable selection methods.</p>
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<p>Confidence and credible intervals and their coverage probabilities under a 95% nominal level for the first 10 predictors, where the first 3 are true nonzero coefficients. Data were simulated under AR(1) correlation <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>n</mi> <mo>,</mo> <mi>p</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>100</mn> <mo>,</mo> <mn>501</mn> <mo>)</mo> </mrow> </semantics></math> and N(0,1) error across 1000 replicates.</p>
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<p>Confidence and credible intervals and their coverage probabilities under a 95% nominal level for the first 10 predictors, where the first 3 are true nonzero coefficients. Data were simulated under AR(1) correlation <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>n</mi> <mo>,</mo> <mi>p</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>100</mn> <mo>,</mo> <mn>501</mn> <mo>)</mo> </mrow> </semantics></math> and <span class="html-italic">t</span>(2) error across 1000 replicates.</p>
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<p>Confidence and credible intervals and their coverage probabilities under a 95% nominal level for the first 10 predictors, where the first 3 are true nonzero coefficients. Data are simulated under independent covariance <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>n</mi> <mo>,</mo> <mi>p</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>100</mn> <mo>,</mo> <mn>501</mn> <mo>)</mo> </mrow> </semantics></math> and N(0,1) error across 1000 replicates.</p>
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<p>Confidence and credible intervals and their coverage probabilities under a 95% nominal level for the first 10 predictors, where the first 3 are true nonzero coefficients. Data are simulated under independent covariance <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>n</mi> <mo>,</mo> <mi>p</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>100</mn> <mo>,</mo> <mn>501</mn> <mo>)</mo> </mrow> </semantics></math> and <span class="html-italic">t</span>(2) error across 1000 replicates.</p>
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21 pages, 10207 KiB  
Article
Hydrothermal Karstification of the Pre-Messinian Eonile Canyon: Geomorphological and Geochemical Evidences for Hypogene Speleogenesis in the Middle Nile Valley of Egypt
by Ashraf A. Mostafa, Hatem M. El-Desoky, Diaa A. Saadawi, Ahmed M. Abdel-Rahman, John Webb, Hassan Alzahrani, Fahad Alshehri, Abdurraouf Okok, Ahmed E. Khalil and Eman A. Marghani
Minerals 2024, 14(9), 946; https://doi.org/10.3390/min14090946 (registering DOI) - 16 Sep 2024
Viewed by 346
Abstract
The surface and subsurface karst features of the Eocene limestone plateaus along the Middle Nile Valley in Egypt were formerly believed to be epigene in origin and to have developed during post-Eocene pluvial periods. However, the morphology of the caves and their restriction [...] Read more.
The surface and subsurface karst features of the Eocene limestone plateaus along the Middle Nile Valley in Egypt were formerly believed to be epigene in origin and to have developed during post-Eocene pluvial periods. However, the morphology of the caves and their restriction to particular stratigraphic intervals suggests that they are hypogene. The geochemistry and mineralogy of the soft, thick-bedded, brown/black cave infills shows that these sediments originated from hydrothermal processes, as evidenced by their Fe, Mn, Co, Ni, and Cu concentrations. Thus, the karst features are hypogene and probably formed during the opening of the Red Sea Rift at the end of the Oligocene and early Miocene. At this time, there was abundant volcanic activity, as shown by basalt lavas ~70 km northwest of Assiut; this triggered the release of large amounts of CO2 that made the hydrothermal waters acidic and dissolved the caves. Full article
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<p>Location map of the El-Balayza hypogenic caves west of Assiut (shown by yellow dots).</p>
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<p>(<b>A</b>) The geomorphological main units in the study area. The yellow dashed line indicates the upper limit of the Nile Valley scarp (unit 2); the red arrow points north. (<b>B</b>) Topographical section showing the relation between hypogenic caves and the main geomorphological units in Middle Nile Valley in Assiut.</p>
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<p>(<b>A</b>) Geologic map of the studied district (modified after [<a href="#B31-minerals-14-00946" class="html-bibr">31</a>]). (<b>B</b>) Simplified stratigraphic sequence showing the different formations in the early Eocene on the western edge of the Nile Valley in the Drunka region (modified after [<a href="#B29-minerals-14-00946" class="html-bibr">29</a>,<a href="#B30-minerals-14-00946" class="html-bibr">30</a>]).</p>
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<p>(<b>A</b>) The distinctive stratigraphic control on distribution of the hypogene caves on the western side of the Nile Valley. The two yellow lines define the transverse extent of the hypogene caves between the Drunka and Zawiya Formations, (H) indicates the relict hypogene surface (mesa) exposed by erosional retreat of the Drunka Formation above it. (<b>B</b>) Exposed relict hypogenic features. Notice the person standing completely inside one of the hypogenic fractures that fed the hypogenic system. (<b>C</b>) Hypogene channels containing hydrothermal black sediments and minerals. (<b>D</b>) Remnants of the hypogenic channels (yellow arrows) that represent the flow paths of ascending solutions in the Zawiya Formation, exposed within the transitional desert zone. (<b>E</b>) Irregular limestone fragments within breccia zone.</p>
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<p>Different features of the hypogene caves west of Assiut. (<b>A</b>–<b>C</b>) Cave entrances between the Zawiya and Drunka Formations, showing typical transverse extension. (<b>A</b>,<b>D</b>) Feeder channels, (<b>A</b>) fissure- and rift-like feeders in passage floors, (<b>D</b>) point feeders. (<b>E</b>,<b>F</b>) Small, isolated holes and condensation channels in El-Balayza caves. (<b>F</b>) Outlet cupolas in the passage ceiling.</p>
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<p>Diagrammatic representation of morphological geothermal features diagnostic of hypogene cave; modified from [<a href="#B9-minerals-14-00946" class="html-bibr">9</a>].</p>
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<p>Limestone photomicrographs. (<b>A</b>,<b>B</b>,<b>D</b>,<b>E</b>) Echinoid fragments, some with calcite overgrowths. (<b>C</b>) Micrite matrix with recrystallized patches and large void filled with mosaic macrocrystalline calcite. (<b>F</b>) Recrystallized calcite molluscan (gastropod) shell fragments embedded in micrite matrix.</p>
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<p>Compositional trends in host limestone. (<b>a</b>) CaO wt.% versus Al<sub>2</sub>O<sub>3</sub> wt.%, (<b>b</b>) CaO wt.% versus SiO<sub>2</sub> wt.%, and (<b>c</b>) CaO wt.% versus Fe<sub>2</sub>O<sub>3</sub> wt.%. (<b>d</b>) Al<sub>2</sub>O<sub>3</sub>-CaO-(MgO + Fe<sub>2</sub>O<sub>3</sub>) ternary diagram. (<b>e</b>) Relationship between Mn and Sr content. (<b>f</b>) Ternary diagram of Fe-Mn-(Co + Ni + Cu) × 10 for host limestone (Ca-rich samples) and iron-rich brown/black cave infill (low-Ca samples) [<a href="#B54-minerals-14-00946" class="html-bibr">54</a>].</p>
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<p>(<b>A</b>) Sediment fill within hypogenic cave, showing layers of yellow-ochre, brown, and black color. (<b>B</b>) Large calcite crystals within void in hydrothermally altered limestone.</p>
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<p>XRD patterns of samples of cave fill. (<b>A</b>) Pure limestone rich by calcite, quartz and anhydrite. (<b>B</b>) black/brown hand specimen rich by kaolinite and rhodochrosite associated to white calcite. (<b>C</b>) grey color sample rich by magnetite, quartz and piemontite. (<b>D</b>) grey sample rich by iron minerals (geothite) and quartz. (<b>E</b>) milky sample refer to carbonate (dolomite + calcite) and quartz bearing geothite. (<b>F</b>) soft sample bearing witherite.</p>
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<p>Representative SEM-BSE images showing high peaks of Ca, Fe, Si, Al, Mg, Mn, and Ba, which are represented by calcite, goethite, kaolinite, dolomite, piemontite, and witherite grains, respectively. (<b>A</b>) subhedral crystals rich by quartz carbonate associated to Mn-Fe deposits. (<b>B</b>) fine anhedral crystal bearing CaCO<sub>3</sub> associated to Fe, Si, Al, K, Mn, Fe. (<b>C</b>) anhedral crystal with Ca, Fe, Si, Al, Mg, Mn, and Ba.</p>
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<p>Distribution of major oxides (<b>A</b>) and trace elements (<b>B</b>) for the iron-rich black/dark brown cave fill samples (upper graphs) and host limestone (lower graphs).</p>
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11 pages, 599 KiB  
Brief Report
Seroprevalence Assessment of Anti-Varicella Antibodies among Adults in the Province of Florence (Italy)
by Angela Bechini, Marco Del Riccio, Cristina Salvati, Benedetta Bonito, Beatrice Zanella, Massimiliano Alberto Biamonte, Mario Bruschi, Johanna Alexandra Iamarino, Letizia Fattorini, Lorenzo Baggiani, Monica Della Fonte, Giovanna Mereu, Paolo Bonanni, Working Group and Sara Boccalini
Vaccines 2024, 12(9), 1056; https://doi.org/10.3390/vaccines12091056 - 16 Sep 2024
Viewed by 352
Abstract
Background: Varicella infections follow a benign course in around 90% of cases, with more severe forms occurring in adults. To identify potential pockets of susceptibility and to improve targeted immunization strategies, this study aims to critically assess immunological status by evaluating varicella seroprevalence [...] Read more.
Background: Varicella infections follow a benign course in around 90% of cases, with more severe forms occurring in adults. To identify potential pockets of susceptibility and to improve targeted immunization strategies, this study aims to critically assess immunological status by evaluating varicella seroprevalence among adults (18–99 years) in the province of Florence (Italy), nearly a decade after Tuscany introduced the vaccination program. Methods: A convenience sample of 430 subjects aged 18 to 94 years (mean age 51.8 ± 18.8 years), stratified by age and sex (53.7% of subjects were female; N = 231), was collected between 2018 and 2019. Sero-analytical analyses were conducted utilizing EUROIMMUN Anti-VZV ELISA (IgG) kits. Results: Most of them were of Italian nationality (87.4%; N = 376). Among the 430 tested samples, 385 (89.5%) were positive and 39 (9.1%) were negative. The remaining six sera (1.4%), confirmed as equivocal, were excluded from further analysis. No significant differences were found based on sex (p-value = 0.706) or nationality (p-value = 0.112). The application of trend tests (Mantel–Haenszel; Kendall Tau-b) showed a significant trend (p < 0.024 and p < 0.032, respectively), with an increasing probability of finding a positive anti-varicella serological status passing from a lower age group (84.2%) to a higher one (93.0%). By considering the female population aged 18–49 years, the seroprevalence of anti-varicella antibodies was found to be 88.4%, with a susceptibility of 11.6%, highlighting the risk of acquiring infection during pregnancy. Conclusions: The introduction of varicella vaccination has had a significant impact on public health in Tuscany and in Italy more generally. However, further efforts should be made to reduce the number of individuals still susceptible in adulthood, with particular attention given to women of childbearing age and the promotion of vaccination through mass and social media and institutional websites. Full article
(This article belongs to the Special Issue Research on Immune Response and Vaccines: 2nd Edition)
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<p>Seroprevalence distribution across age groups. Note: percentages and ratios (n/N) are shown in the figure.</p>
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9 pages, 1218 KiB  
Article
The Role of COVID-19 Vaccination in Serological and Infectious Response in the Xokós Indigenous Community
by Eloia Emanuelly Dias Silva, Marina dos Santos Barreto, Ronaldy Santana Santos, Deise Maria Rego Rodrigues Silva, Pedro Henrique Macedo Moura, Pamela Chaves de Jesus, Jessiane Bispo de Souza, Adriana Gibara Guimarães, Lucas Alves da Mota Santana and Lysandro Pinto Borges
COVID 2024, 4(9), 1476-1484; https://doi.org/10.3390/covid4090104 (registering DOI) - 16 Sep 2024
Viewed by 254
Abstract
Objectives: This study aims to examine the serological and infectious characteristics of the Xokós indigenous community in Brazil, both prior to and following COVID-19 immunization; Methods: Immunofluorescence assays were employed to identify the SARS-CoV-2 viral antigen, while IgM and IgG antibody tests for [...] Read more.
Objectives: This study aims to examine the serological and infectious characteristics of the Xokós indigenous community in Brazil, both prior to and following COVID-19 immunization; Methods: Immunofluorescence assays were employed to identify the SARS-CoV-2 viral antigen, while IgM and IgG antibody tests for COVID-19 were utilized to assess the participants’ infectious and serological profiles in July 2020, before the commencement of the COVID-19 vaccination campaign, and in March 2022, during the booster dose vaccination campaign; Results: The majority of participants (n = 22) were female, with an average age of 42.20 years. The most prevalent comorbidity was hypertension (60%; n = 9), followed by hypertension associated with diabetes (20%; n = 3). No statistically significant correlation was found between the timing of vaccination and the levels of antigens or IgM. However, the prevalence of reactive antigens and IgM was 13.3% (n = 4) in the pre-vaccination group and 3.3% (n = 1) in the post-vaccination group. A statistically significant difference in IgG production was observed before and after vaccination (χ2(1) = 39.095, p < 0.01), as well as differences in IgG antibody detection before and after vaccination and in the vaccines used. Participants showed a higher probability of reactive IgG antibodies following vaccination; Conclusions: Our data demonstrate the beneficial effects of vaccination on the indigenous community, highlighting that continued immunization is a crucial step in protecting indigenous health and preventing severe outbreaks and deaths associated with the disease. Full article
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<p>Stages and processes of the study: steps (I) and (II) refer to the stages of the study methodology.</p>
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<p>Comparison of cut-off index (COI) values for IgG antibodies between the pre-vaccination (red) and post-vaccination groups (blue).</p>
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24 pages, 6932 KiB  
Article
Evolutionary Game Analysis of Collaborative Prefabricated Buildings Development Behavior in China under Carbon Emissions Trading Schemes
by Wenbin Cao and Yiming Sun
Sustainability 2024, 16(18), 8084; https://doi.org/10.3390/su16188084 - 16 Sep 2024
Viewed by 459
Abstract
Prefabricated buildings (PBs) are considered a green way to reduce energy consumption and carbon emissions in the construction industry due to their environmental and social benefits. However, PBs have obstacles such as high construction costs, immature technology, and insufficient policy incentives, and developers’ [...] Read more.
Prefabricated buildings (PBs) are considered a green way to reduce energy consumption and carbon emissions in the construction industry due to their environmental and social benefits. However, PBs have obstacles such as high construction costs, immature technology, and insufficient policy incentives, and developers’ willingness to develop them needs to be higher. Therefore, it is necessary to explore how to motivate more developers to develop PBs. In this paper, we first discuss the impact of the carbon emissions trading scheme (ETS) on the construction industry and then consider the heterogeneity of construction developers, introduce a collaborative mechanism to establish a three-party evolutionary game model between the government and the heterogeneous developers, and explore the evolution of the three-party dynamic strategies through numerical simulation. The results show that developers’ initial development probability affects the system’s evolutionary trend, and the developer who obtains more low-carbon benefits plays a dominant role. Further analyses show that critical factors such as market profitability, synergistic benefits, and carbon tax price positively influence the development of PBs, and the influence of synergistic cooperation mechanisms should be especially emphasized. This study provides practical insights into the sustainable development of the construction industry and the government’s development of a suitable carbon portfolio policy for it. Including the construction industry in the ETS is recommended when carbon prices reach 110 RMB/t. At this point, the government can remove the subsidy for PBs, but the behaviors of the developers who participate in the ETS still need to be supervised. Full article
(This article belongs to the Section Green Building)
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<p>The interactions between heterogeneous developers under an ETS.</p>
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<p>The evolution process of the system in the initial stage.</p>
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<p>The evolution process of the system in the transition stage.</p>
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<p>The evolution process of the system in the growth stage.</p>
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<p>The evolution process of the system in the stabilization stage.</p>
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<p>Evolutionary convergence before and after the introduction of the ETS.</p>
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<p>Effect of B on tripartite evolutionary processes.</p>
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<p>Effect of V on tripartite evolutionary processes.</p>
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<p>Effect of P on tripartite evolutionary processes.</p>
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<p>Effect of S on tripartite evolutionary processes.</p>
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<p>Effect of g on tripartite evolutionary processes.</p>
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<p>Effect of D<sub>i</sub> on tripartite evolutionary processes.</p>
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33 pages, 520 KiB  
Article
Imputing Missing Data in One-Shot Devices Using Unsupervised Learning Approach
by Hon Yiu So, Man Ho Ling and Narayanaswamy Balakrishnan
Mathematics 2024, 12(18), 2884; https://doi.org/10.3390/math12182884 - 15 Sep 2024
Viewed by 400
Abstract
One-shot devices are products that can only be used once. Typical one-shot devices include airbags, fire extinguishers, inflatable life vests, ammo, and handheld flares. Most of them are life-saving products and should be highly reliable in an emergency. Quality control of those productions [...] Read more.
One-shot devices are products that can only be used once. Typical one-shot devices include airbags, fire extinguishers, inflatable life vests, ammo, and handheld flares. Most of them are life-saving products and should be highly reliable in an emergency. Quality control of those productions and predicting their reliabilities over time is critically important. To assess the reliability of the products, manufacturers usually test them in controlled conditions rather than user conditions. We may rely on public datasets that reflect their reliability in actual use, but the datasets often come with missing observations. The experimenter may lose information on covariate readings due to human errors. Traditional missing-data-handling methods may not work well in handling one-shot device data as they only contain their survival statuses. In this research, we propose Multiple Imputation with Unsupervised Learning (MIUL) to impute the missing data using Hierarchical Clustering, k-prototype, and density-based spatial clustering of applications with noise (DBSCAN). Our simulation study shows that MIUL algorithms have superior performance. We also illustrate the method using datasets from the Crash Report Sampling System (CRSS) of the National Highway Traffic Safety Administration (NHTSA). Full article
(This article belongs to the Special Issue Statistical Simulation and Computation: 3rd Edition)
13 pages, 1339 KiB  
Article
Cost-Sensitive Rainfall Intensity Prediction with High-Noise Commercial Microwave Link Data
by Liankai Zheng, Jiaxiang Lin, Zhixin Huang, Yu Lin, Qin Zheng, Qianqian Chen, Lizheng Lin and Jianyun Chen
Sustainability 2024, 16(18), 8067; https://doi.org/10.3390/su16188067 - 15 Sep 2024
Viewed by 307
Abstract
Rainfall intensity prediction based on commercial microwave link data has received significant attention in recent years due to the higher spatial resolution and lower energy consumption. However, the predictive performance is inferior to the model based on meteorological data by reason of the [...] Read more.
Rainfall intensity prediction based on commercial microwave link data has received significant attention in recent years due to the higher spatial resolution and lower energy consumption. However, the predictive performance is inferior to the model based on meteorological data by reason of the high noise in commercial microwave link data, further exacerbated by the imbalance in the number of samples across different rainfall intensities. Hence, a cost-sensitive rainfall intensity prediction model (CSRFP) is proposed to achieve better predictive performance in high-noise commercial microwave link data. First, the spatiotemporal scene information is encoded, and its weights are trained to provide the model with correlations between signal data from different stations, which helps the model to better capture potential patterns between the data and thus reduce the effect of noise. Next, the rainfall cross-entropy loss based on the rainfall distribution provides the model with the probability of different rainfall intensities occurring and back-calculates the signal attenuation at a specific rainfall intensity, assigning more reasonable weights to different samples considering signal attenuation, which makes the model cost-sensitive and can address the class imbalance problem. Extensive experiments are carried out on high-noise communication data and imbalanced rainfall data in Fuzhou. Compared to typical prediction methods such as RNN applied to rainfall and communication data, CSRFP improves Recall, Precision, AUCROC, AUCPR and F1 and Accuracy by approximately 19%, 37%, 8%, 22%, 30%, and 17%, respectively. Significantly, the model’s prediction accuracy for heavy rain with the smallest number of samples improves by about 13%. Full article
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<p>Model structure.</p>
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<p>AEL structure.</p>
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<p>Native model classification accuracy.</p>
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<p>Receiver operating characteristic curve and precision—recall curve.</p>
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15 pages, 1319 KiB  
Article
Work Motivation: A Wall That Not Even the COVID-19 Pandemic Could Knock Down: Research Article
by Patrik M. Bogdán, Miklós Zrínyi, Ildikó Madarász, Lívia Tóth and Annamária Pakai
Healthcare 2024, 12(18), 1857; https://doi.org/10.3390/healthcare12181857 - 15 Sep 2024
Viewed by 252
Abstract
The emergence of the coronavirus pandemic in 2020 posed a new challenge, imposing extraordinary physical and psychological burdens on healthcare workers, clearly exacerbating and intensifying career abandonment. Objectives: The aim of our study was to explore the motivating factors among nurses serving during [...] Read more.
The emergence of the coronavirus pandemic in 2020 posed a new challenge, imposing extraordinary physical and psychological burdens on healthcare workers, clearly exacerbating and intensifying career abandonment. Objectives: The aim of our study was to explore the motivating factors among nurses serving during the coronavirus pandemic that they considered important in their profession despite the mental and physical stress brought about by the pandemic. Methods: A descriptive, cross-sectional study was conducted at the University of Pécs-Clinical Center-Regional Coronavirus Care Center between September 2022 and December 2022. We used non-random, expert, purposive sampling, recruiting healthcare workers who had spent at least 3 months working in a COVID ward (n = 196). Data collection was conducted by using an online, anonymous questionnaire, which included sociodemographic questions, the “Motivation at Work Scale”, and a self-edited six-item questionnaire. Results: Regarding the 5-year probability of remaining in the healthcare field, nine participants (4.5%) will definitely leave the healthcare sector, twenty-seven participants (13.7%) are undecided, and seventy-eight participants (39.7%) will definitely stay in the healthcare field over the next 5 years. There is a positive, weak, but significant correlation between intrinsic motivation and the probability of leaving the profession within 5 years (r = 0.281; p < 0.05). We identified a significant, negative, and weak correlation between the number of revisited waves of the coronavirus and the fear of redeployment to the COVID ward (r = −0.273; p < 0.05). Conclusions: Despite the challenges posed by the coronavirus pandemic, only a small percentage of nurses consider leaving the healthcare profession. Joy and enjoyment in their work were dominant factors even during the pandemic. Full article
(This article belongs to the Section Nursing)
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<p>Average scores of the Motivation at Work Scale. (<span class="html-italic">n</span> = 196).</p>
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<p>Subscales of the Motivation at Work Scale (<span class="html-italic">n</span> = 196).</p>
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<p>Results of the Fear of reassignment to a COVID ward questionnaire (<span class="html-italic">n</span> = 196).</p>
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21 pages, 10053 KiB  
Article
Sensitivity Analysis of Fatigue Life for Cracked Carbon-Fiber Structures Based on Surrogate Sampling and Kriging Model under Distribution Parameter Uncertainty
by Haodong Liu, Zheng Liu, Liang Tu, Jinlong Liang and Yuhao Zhang
Appl. Sci. 2024, 14(18), 8313; https://doi.org/10.3390/app14188313 (registering DOI) - 15 Sep 2024
Viewed by 258
Abstract
The quality and reliability of wind turbine blades, as core components of wind turbines, are crucial for the operational safety of the entire system. Carbon fiber is the primary material for wind turbine blades. However, during the manufacturing process, manual intervention inevitably introduces [...] Read more.
The quality and reliability of wind turbine blades, as core components of wind turbines, are crucial for the operational safety of the entire system. Carbon fiber is the primary material for wind turbine blades. However, during the manufacturing process, manual intervention inevitably introduces minor defects, which can lead to crack propagation under complex working conditions. Due to limited understanding and measurement capabilities of the input variables of structural systems, the distribution parameters of these variables often exhibit uncertainty. Therefore, it is essential to assess the impact of distribution parameter uncertainty on the fatigue performance of carbon-fiber structures with initial cracks and quickly identify the key distribution parameters affecting their reliability through global sensitivity analysis. This paper proposes a sensitivity analysis method based on surrogate sampling and the Kriging model to address the computational challenges and engineering application difficulties in distribution parameter sensitivity analysis. First, fatigue tests were conducted on carbon-fiber structures with initial cracks to study the dispersion of their fatigue life under different initial crack lengths. Next, based on the Hashin fatigue failure criterion, a simulation analysis method for the fatigue cumulative damage life of cracked carbon-fiber structures was proposed. By introducing uncertainty parameters into the simulation model, a training sample set was obtained, and a Kriging model describing the relationship between distribution parameters and fatigue life was established. Finally, an efficient input variable sampling method using the surrogate sampling probability density function was introduced, and a Sobol sensitivity analysis method based on surrogate sampling and the Kriging model was proposed. The results show that this method significantly reduces the computational burden of distribution parameter sensitivity analysis while ensuring computational accuracy. Full article
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<p>Manufacturing Process of Wind Turbine Blades.</p>
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<p>Schematic Diagram of Distribution Parameter Uncertainty Transfer.</p>
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<p>Sensitivity Index Solving Process Based on Kriging and Surrogate Sampling.</p>
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<p>Geometry of the Specimen.</p>
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<p>Experimental Procedure. (<b>a</b>) Tensile strength testing; (<b>b</b>) fatigue testing; (<b>c</b>) fracture details.</p>
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<p>Experimental Data.</p>
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<p>Finite Element Model Setup.</p>
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<p>Cumulative Fatigue Damage Flow Chart.</p>
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<p>Stress Cloud of Cracked Carbon Fibers.</p>
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<p>Comparison of Fatigue Life Simulation and Experimental Results.</p>
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<p>Flowchart of Cyclic Calculation.</p>
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<p>Model Prediction Results.</p>
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<p>Comparison of Life Prediction Results from Different Models.</p>
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<p>Fatigue Life Frequency Fitting Curves.</p>
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<p>Comparison of Sensitivity Index Results.</p>
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19 pages, 334 KiB  
Article
Influence of Physical Activity, Physical Fitness, Age, Biological Maturity and Anthropometric Variables on the Probability of Suffering Lumbar, Neck and Shoulder Pain in Spanish Adolescents from the Region of Murcia
by Mario Albaladejo-Saura, Adrián Mateo-Orcajada, Lucía Abenza-Cano and Raquel Vaquero-Cristóbal
Healthcare 2024, 12(18), 1856; https://doi.org/10.3390/healthcare12181856 - 15 Sep 2024
Viewed by 292
Abstract
Background: Back pain in adolescents is a common injury, mainly affecting the lumbar, cervical and sometimes shoulder region. This has been related to various factors, such as lifestyle habits or physical capacity, but no previous research has shown conclusive results. The aims of [...] Read more.
Background: Back pain in adolescents is a common injury, mainly affecting the lumbar, cervical and sometimes shoulder region. This has been related to various factors, such as lifestyle habits or physical capacity, but no previous research has shown conclusive results. The aims of this study was to analyze the risk of suffering lumbar, neck and shoulder pain according to anthropometric and physical fitness variables, physical activity level, age and biological maturity in adolescents, as well as the influence of sex in the study results. Methods: A descriptive cross-sectional study was performed, including a sample of 2015 adolescents (boys: n = 1006, mean age = 14.41 ± 1.35 years-old; girls: n = 1009, mean age = 14.48 ± 1.41 years-old). The participants underwent an anthropometric evaluation and physical fitness tests were carried out, including a 20 m shuttle run, a counter movement jump, a horizontal jump, a 20 m sprint and push-up tests, followed by the completion of lumbar, neck and shoulder pain questionnaires. Results: Higher values in age and peak height velocity (PHV) showed an increase in the risk of suffering lumbar, neck and shoulder pain (OR = 0.79–1.55; p = 0.000–0.025). The anthropometric variables related to adiposity showed an increase in the risk of suffering back pain, with significant incidence in the lumbar region (OR = 1.32–1.60; p = 0.000); while muscle mass showed a protective effect (OR = 0.59; p = 0.000). Regarding the fitness tests, a better physical fitness seemed to protect adolescents from suffering from the analyzed back pains in the general sample and in the boys sample (OR = 0.56–1.60; p = 0.000), while in the girls sample the influence of the physical fitness was less relevant. Conclusions: Both anthropometry and physical fitness may influence the occurrence of back pain in adolescents, with some variations in their importance according to sex. Full article
27 pages, 1772 KiB  
Article
Association Model-Based Intermittent Connection Fault Diagnosis for Controller Area Networks
by Longkai Wang, Shuqi Hu and Yong Lei
Actuators 2024, 13(9), 358; https://doi.org/10.3390/act13090358 - 14 Sep 2024
Viewed by 256
Abstract
Controller Area Networks (CANs) play an important role in many safety-critical industrial systems, which places high demands on their reliability performance. However, the intermittent connection (IC) of network cables, a random and transient connectivity problem, is a common but hard troubleshooting fault that [...] Read more.
Controller Area Networks (CANs) play an important role in many safety-critical industrial systems, which places high demands on their reliability performance. However, the intermittent connection (IC) of network cables, a random and transient connectivity problem, is a common but hard troubleshooting fault that can cause network performance degradation, system-level failures, and even safety issues. Therefore, to ensure the reliability of CANs, a fault symptom association model-based IC fault diagnosis method is proposed. Firstly, the symptoms are defined by examining the error records, and the domains of the symptoms are derived to represent the causal relationship between the fault locations and the symptoms. Secondly, the fault probability for each location is calculated by minimizing the difference between the symptom probabilities calculated from the count information and those fitted by the total probability formula. Then, the fault symptom association model is designed to synthesize the causal and the probabilistic diagnostic information. Finally, a model-based maximal contribution diagnosis algorithm is developed to locate the IC faults. Experimental results of three case studies show that the proposed method can accurately and efficiently identify various IC fault location scenarios in networks. Full article
(This article belongs to the Section Control Systems)
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Figure 1
<p>Different scenarios of IC locations in a CAN. Scenarios A and B have IC faults on the drop cables of the sending node and a nonsending node, respectively. Scenario C has IC faults on a trunk cable.</p>
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<p>Overall framework of the proposed IC fault diagnosis method.</p>
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<p>Equivalent topology and error collection architecture of the CAN shown in <a href="#actuators-13-00358-f001" class="html-fig">Figure 1</a>.</p>
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<p>Illustration of (<b>a</b>) an error record and (<b>b</b>) the corresponding correct data frame. R denotes a recessive bit. D denotes a dominant bit.</p>
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<p>Example of a fault symptom association model for local IC faults. The causality between candidate fault locations and symptoms is represented by the dot size, with a large dot indicating that a fault on link <math display="inline"><semantics> <msub> <mi>l</mi> <mi>j</mi> </msub> </semantics></math> can lead to symptom <math display="inline"><semantics> <msub> <mi>S</mi> <mi>i</mi> </msub> </semantics></math> and a small dot indicating that it cannot. The fault probabilities for the candidate fault locations are represented by the dot color, by which the candidate fault locations are ordered.</p>
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<p>Fault symptom association model for IC fault diagnosis in Examples 2 and 3. To clearly show the diagnostic process and result in Example 3, the dashed arrows are used to illustrate the candidate fault location that provides the best explanation for each symptom, and the dashed box on the horizontal coordinate is used to indicate that the fault locations are determined.</p>
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<p>Schematic layout of the IC fault injection and error collection testbed for CAN IC fault diagnosis.</p>
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<p>Layout of the experimental testbed constructed for the case studies.</p>
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<p>Equivalent topology of the eight-node network and summary of the IC fault injection locations considered in all case studies.</p>
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<p>Fault symptom association model for diagnosing local IC faults in case study 1. To clearly show the result, the dashed arrows are used to illustrate the candidate fault location that provides the best explanation for each symptom, and the dashed box on the horizontal coordinate is used to indicate that the faults are determined.</p>
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<p>Fault symptom association model for diagnosing trunk IC faults in case study 1.</p>
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<p>Fault symptom association model for diagnosing trunk IC faults in case study 2.</p>
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<p>Fault symptom association model for diagnosing trunk IC faults in case study 3.</p>
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<p>Comparison of trunk IC fault diagnosis results of methods proposed in [<a href="#B52-actuators-13-00358" class="html-bibr">52</a>,<a href="#B53-actuators-13-00358" class="html-bibr">53</a>,<a href="#B54-actuators-13-00358" class="html-bibr">54</a>] and this work in (<b>a</b>) case study 1, (<b>b</b>) case study 2, and (<b>c</b>) case study 3.</p>
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<p>Trends in mean values of performance metrics of the proposed method versus data size in (<b>a</b>) case study 1, (<b>b</b>) case study 2, and (<b>c</b>) case study 3. The upper and lower bounds of the error bars are the positive and negative standard deviations of the corresponding metrics.</p>
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