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Keywords = partial least square regression

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18 pages, 1900 KiB  
Article
Effects of Red Vinasse on Physicochemical Qualities of Blue Round Scad (Decapterus maruadsi) During Storage, and Shelf Life Prediction
by Shan Xue, Shuyi Chen, Bohu Liu and Jia Liu
Foods 2024, 13(22), 3654; https://doi.org/10.3390/foods13223654 (registering DOI) - 17 Nov 2024
Viewed by 97
Abstract
A fish processed with red vinasse is a type of Fujian cuisine with regional characteristics. In order to monitor the effect of red vinasse on storage quality and shelf life of blue round scad (Decapterus maruadsi) during storage, the changes in [...] Read more.
A fish processed with red vinasse is a type of Fujian cuisine with regional characteristics. In order to monitor the effect of red vinasse on storage quality and shelf life of blue round scad (Decapterus maruadsi) during storage, the changes in fat content, thiobarbituric acid reactive substances (TBARS), composition of polyunsaturated fatty acids (PUFAs), pH value, texture, and sensory quality were studied at different storage temperatures (4 °C, 25 °C, and 37 °C). By analyzing the correlation between changes in sensory qualities and physical and chemical indexes, a first-order kinetic model and the Arrhenius equation were used to build a shelf-life prediction model for blue round scad during storage. The results showed that processing with red vinasse can significantly reduce the malondialdehyde (MDA) production and the decrease in PUFAs, eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) (p < 0.05) during storage. Based on partial least squares regression (PLSR), the storage temperature and time have a significant impact on the PUFA composition in blue round scad, which changed less when the samples were stored at 4 °C and 25 °C, and they had better nutritional composition of fatty acids at lower temperatures. Among the PUFAs, DHA (C22:6n-3) and EPA (C20:5n-3) had higher relative contents and significantly decreased during storage (p < 0.05). Additionally, the processing with red vinasse can slow down the increase in total volatile basic nitrogen (TVB-N) value and pH of blue round scad, maintain the appropriate hardness, elasticity, cohesion and chewability, and improve the overall sensory quality of the fish. In addition, according to the results of model prediction based on TBARS value, the storage shelf life of blue round scad with red vinasse added was 55 d, 2.7 d and 28 h at 4 °C, 25 °C and 37 °C, respectively. The accuracy of the forecast model was high, and the relative errors of the measured values and predicted values were less than 10%. Thus, it not only provided a theoretical basis for the processing and application of red vinasse to Chinese traditional food, but also provided innovative ideas for the safe storage and high-value utilization of blue round scad. Full article
(This article belongs to the Special Issue Biosynthesis Technology and Future Functional Foods)
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Graphical abstract

Graphical abstract
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<p>Change in TBARS in blue round scad samples during storage at 4 °C (<b>I</b>), 25 °C (<b>II</b>), 37 °C (<b>III</b>) (EG: the experimental group of blue round scad samples processed with red vinasse; CG: the control group of blue round scad samples not processed with red vinasse; a–f: different lowercase letters represented significant differences between EG data (<span class="html-italic">p</span> &lt; 0.05); A–G: different capital lettersdata represented significant differences between CG data (<span class="html-italic">p</span> &lt; 0.05)).</p>
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<p>Loading plots of correlation of each index. The <span class="html-italic">X</span>-axis represents the main design variables: 17 of 0/1 sample variables (3 storage temperatures, 14 storage times), PUFA/SFA values, and SFA + MUFA values. The <span class="html-italic">Y</span>-axis represents PUFA composition. Numbers 1 to 22 represent C18:2n-6 to C22:6n-3 of EG, respectively. Numbers C1~C11 represent C18:2n-6c~C22:6n-3 of CG, respectively. The inner and outer circles represent correlation coefficients r<sup>2</sup> = 0.5 (50%) and r<sup>2</sup> = 1.0 (100%), respectively.</p>
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<p>Change in TVB-N in blue round scad samples during storage at 4 °C (<b>I</b>), 25 °C (<b>II</b>), 37 °C (<b>III</b>) (EG: the experimental group of blue round scad samples processed with red vinasse; CG: the control group samples of blue round scad not processed with red vinasse; a–f: different lowercase letters represented significant differences between EG data (<span class="html-italic">p</span> &lt; 0.05); A–F: different capital lettersdata represented significant differences between CG data (<span class="html-italic">p</span> &lt; 0.05)).</p>
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<p>Change in pH of blue round scad samples during storage at 4 °C (<b>I</b>), 25 °C (<b>II</b>), 37 °C (<b>III</b>) (EG: the experimental group of blue round scad samples processed with red vinasse; CG: the control group of blue round scad samples not processed with red vinasse; a–d: different lowercase letters represented significant differences between EG data (<span class="html-italic">p</span> &lt; 0.05); A–D: different capital lettersdata represented significant differences between CG data (<span class="html-italic">p</span> &lt; 0.05)).</p>
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<p>Change in sensory score for blue round scad samples during storage at 4 °C (<b>I</b>), 25 °C (<b>II</b>), and 37 °C (<b>III</b>) (EG: the experimental group of blue round scad samples processed with red vinasse; CG: the control group of blue round scad samples not processed with red vinasse; a–d: different lowercase letters represented significant differences between EG data (<span class="html-italic">p</span> &lt; 0.05); A–D: different capital lettersdata represented significant differences between CG data (<span class="html-italic">p</span> &lt; 0.05)).</p>
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24 pages, 25821 KiB  
Article
Impact of Paddy Field Expansion on Ecosystem Services and Associated Trade-Offs and Synergies in Sanjiang Plain
by Xilong Dai, Linghua Meng, Yong Li, Yunfei Yu, Deqiang Zang, Shengqi Zhang, Jia Zhou, Dan Li, Chong Luo, Yue Wang and Huanjun Liu
Agriculture 2024, 14(11), 2063; https://doi.org/10.3390/agriculture14112063 (registering DOI) - 16 Nov 2024
Viewed by 278
Abstract
In recent decades, the integrity and security of the ecosystem in the Sanjiang Plain have faced severe challenges due to land reclamation. Understanding the impact of paddy field expansion on regional ecosystem services (ESs), as well as revealing the trade-offs and synergies (TOS) [...] Read more.
In recent decades, the integrity and security of the ecosystem in the Sanjiang Plain have faced severe challenges due to land reclamation. Understanding the impact of paddy field expansion on regional ecosystem services (ESs), as well as revealing the trade-offs and synergies (TOS) between these services to achieve optimal resource allocation, has become an urgent issue to address. This study employs the InVEST model to map the spatial and temporal dynamics of five key ESs, while the Optimal Parameter Geodetector (OPGD) identifies primary drivers of these changes. Correlation analysis and Geographically Weighted Regression (GWR) reveal intricate TOS among ESs at multiple scales. Additionally, the Partial Least Squares-Structural Equation Model (PLS-SEM) elucidates the direct impacts of paddy field expansion on ESs. The main findings include the following: (1) The paddy field area in the Sanjiang Plain increased from 5775 km2 to 18,773.41 km2 from 1990 to 2020, an increase of 12,998.41 km2 in 40 years. And the area of other land use types has generally decreased. (2) Overall, ESs showed a recovery trend, with carbon storage (CS) and habitat quality (HQ) initially decreasing but later improving, and consistent increases were observed in soil conservation, water yield (WY), and food production (FP). Paddy fields, drylands, forests, and wetlands were the main ES providers, with soil type, topography, and NDVI emerging as the main influencing factors. (3) Distinct correlations among ESs, where CS shows synergies with HQ and SC, while trade-offs are noted between CS and both WY and FP. These TOS demonstrate significant spatial heterogeneity and scale effects across subregions. (4) Paddy field expansion enhances regional SC, WY, and FP, but negatively affects CS and HQ. These insights offer a scientific basis for harmonizing agricultural development with ecological conservation, enriching our understanding of ES interrelationships, and guiding sustainable ecosystem management and policymaking. Full article
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<p>The flowchart of this study.</p>
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<p>Study area. (<b>a</b>) Location of the study area. (<b>b</b>) Elevation and county boundaries. (<b>c</b>) Land cover/land use in 2020.</p>
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<p>(<b>a</b>) Land use changes in the SJP from 1990 to 2020. (<b>b</b>) Land use transition chord diagram in the SJP from 1990 to 2020.</p>
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<p>(<b>a</b>) Spatiotemporal distribution of ESs in the SJP from 1990 to 2020. (<b>b</b>) Spatiotemporal changes in ESs in the SJP.</p>
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<p>Interannual changes in the total ESs of the SJP.</p>
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<p>Nightingale rose charts of ESs by eight LUTs for 1990, 2000, 2010, and 2020.</p>
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<p>Percentage of and change in the total supply of ESs by eight LUTs for 1990, 2000, 2010, and 2020.</p>
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<p>Interactive detection of influencing factors of ESs in SJP. Note: X1, elevation; X2, slope; X3, annual precipitation; X4, annual mean temperature; X5, annual evapotranspiration; X6, normalized difference vegetation index; X7, soil type; X8, distance to river; X9, policy factors.</p>
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<p>Correlation matrix and scatterplot of TOS of ESs in the SJP from 1990 to 2020. *** Indicating a highly significant <span class="html-italic">p</span> &lt; 0.001. A, B represents the correlation demonstrated by dividing the data in the study area into two groups on average.</p>
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<p>Spatial distribution of TOS of ESs in the SJP.</p>
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<p>Impact of paddy field expansion on ESs in the SJP.</p>
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<p>Changes in annual mean temperature and annual precipitation in the SJP from 1990 to 2020.</p>
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<p>Changes in paddy area in the SJP and policy-driven paddy area expansion.</p>
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15 pages, 14093 KiB  
Article
Integrating Multiple Hierarchical Parameters to Achieve the Self-Compensation of Scale Factor in a Micro-Electromechanical System Gyroscope
by Rui Zhou, Rang Cui, Daren An, Chong Shen, Yu Bai and Huiliang Cao
Micromachines 2024, 15(11), 1385; https://doi.org/10.3390/mi15111385 (registering DOI) - 16 Nov 2024
Viewed by 205
Abstract
The scale factor of thermal sensitivity serves as a crucial performance metric for micro-electromechanical system (MEMS) gyroscopes, and is commonly employed to assess the temperature stability of inertial sensors. To improve the temperature stability of the scale factor of MEMS gyroscopes, a self-compensation [...] Read more.
The scale factor of thermal sensitivity serves as a crucial performance metric for micro-electromechanical system (MEMS) gyroscopes, and is commonly employed to assess the temperature stability of inertial sensors. To improve the temperature stability of the scale factor of MEMS gyroscopes, a self-compensation method is proposed. This is achieved by integrating the primary and secondary relevant parameters of the scale factor using the partial least squares regression (PLSR) algorithm. In this paper, a scale factor prediction model is presented. The model indicates that the resonant frequency and demodulation phase angle are the primary correlation terms of the scale factor, while the drive control voltage and quadrature feedback voltage are the secondary correlation terms of the scale factor. By employing a weighted fusion of correlated terms through PLSR, the scale factor for temperature sensitivity is markedly enhanced by leveraging the predicted results to compensate for the output. The results indicate that the maximum error of the predicted scale factor is 0.124% within the temperature range of −40 °C to 60 °C, and the temperature sensitivity of the scale factor decreases from 6180 ppm/°C to 9.39 ppm/°C. Full article
(This article belongs to the Special Issue MEMS Sensors and Actuators: Design, Fabrication and Applications)
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<p>SVRG structure chip diagram.</p>
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<p>(<b>a</b>) Vibrational form of drive mode. (<b>b</b>) Vibrational form of sense mode. SVRG’s primary and secondary modal vibration forms.</p>
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<p>Electrode distribution of SVRG.</p>
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<p>Mechanical model of SVRG.</p>
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<p>Block diagram of gyroscope’s sense mode of operation.</p>
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<p>Heatmap of correlation analysis for each parameter.</p>
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<p>Scale factor prediction results.</p>
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<p>(<b>a</b>) Gyro chip package size. (<b>b</b>) Gyro physical structure. (<b>c</b>) Hardware circuit of gyro self-compensation system. Gyro self-compensation system composition.</p>
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<p>Block diagram of self-compensating system.</p>
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<p>Test experiment environment setup.</p>
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<p>Test results of each parameter across a wide temperature range.</p>
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<p>Comparison of scale factor temperature sensitivity results before and after SVRG compensation.</p>
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<p>Gyroscope zero-bias stability test results before and after compensation.</p>
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17 pages, 2380 KiB  
Article
Nondestructive Detection of Litchi Stem Borers Using Multi-Sensor Data Fusion
by Zikun Zhao, Sai Xu, Huazhong Lu, Xin Liang, Hongli Feng and Wenjing Li
Agronomy 2024, 14(11), 2691; https://doi.org/10.3390/agronomy14112691 - 15 Nov 2024
Viewed by 223
Abstract
To enhance lychee quality assessment and address inconsistencies in post-harvest pest detection, this study presents a multi-source fusion approach combining hyperspectral imaging, X-ray imaging, and visible/near-infrared (Vis/NIR) spectroscopy. Traditional single-sensor methods are limited in detecting pest damage, particularly in lychees with complex skins, [...] Read more.
To enhance lychee quality assessment and address inconsistencies in post-harvest pest detection, this study presents a multi-source fusion approach combining hyperspectral imaging, X-ray imaging, and visible/near-infrared (Vis/NIR) spectroscopy. Traditional single-sensor methods are limited in detecting pest damage, particularly in lychees with complex skins, as they often fail to capture both external and internal fruit characteristics. By integrating multiple sensors, our approach overcomes these limitations, offering a more accurate and robust detection system. Significant differences were observed between pest-free and infested lychees. Pest-free lychees exhibited higher hardness, soluble sugars (11% higher in flesh, 7% higher in peel), vitamin C (50% higher in flesh, 2% higher in peel), polyphenols, anthocyanins, and ORAC values (26%, 9%, and 14% higher, respectively). The Vis/NIR data processed with SG+SNV+CARS yielded a partial least squares regression (PLSR) model with an R2 of 0.82, an RMSE of 0.18, and accuracy of 89.22%. The hyperspectral model, using SG+MSC+SPA, achieved an R2 of 0.69, an RMSE of 0.23, and 81.74% accuracy, while the X-ray method with support vector regression (SVR) reached an R2 of 0.69, an RMSE of 0.22, and 76.25% accuracy. Through feature-level fusion, Recursive Feature Elimination with Cross-Validation (RFECV), and dimensionality reduction using PCA, we optimized hyperparameters and developed a Random Forest model. This model achieved 92.39% accuracy in pest detection, outperforming the individual methods by 3.17%, 10.25%, and 16.14%, respectively. The multi-source fusion approach also improved the overall accuracy by 4.79%, highlighting the critical role of sensor fusion in enhancing pest detection and supporting the development of automated non-destructive systems for lychee stem borer detection. Full article
(This article belongs to the Section Precision and Digital Agriculture)
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<p>Schematic diagram of the visible/near-infrared spectroscopy acquisition device.</p>
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<p>Schematic diagram of the hyperspectral imaging acquisition device.</p>
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<p>Schematic diagram of the X-ray image acquisition system.</p>
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<p>Multi-source information fusion flowchart.</p>
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<p>(<b>a</b>) Raw visible/near-infrared spectrum, (<b>b</b>) visible/near-infrared spectrum after SG+SNV preprocessing.</p>
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<p>(<b>a</b>) Raw hyperspectral spectrum, (<b>b</b>) hyperspectral spectrum after SG+MSC preprocessing.</p>
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<p>PCA classification of grayscale values in X-ray imaging feature regions for stem-borer-infested and non-infested fruit.</p>
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<p>(<b>a</b>) Litchi fruit without pests, (<b>b</b>) litchi fruit with pests.</p>
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19 pages, 4707 KiB  
Article
Chlorophyll Content Estimation of Ginkgo Seedlings Based on Deep Learning and Hyperspectral Imagery
by Zilong Yue, Qilin Zhang, Xingzhou Zhu and Kai Zhou
Forests 2024, 15(11), 2010; https://doi.org/10.3390/f15112010 - 14 Nov 2024
Viewed by 373
Abstract
Accurate estimation of chlorophyll content is essential for understanding the growth status and optimizing the cultivation practices of Ginkgo, a dominant multi-functional tree species in China. Traditional methods based on chemical analysis for determining chlorophyll content are labor-intensive and time-consuming, making them [...] Read more.
Accurate estimation of chlorophyll content is essential for understanding the growth status and optimizing the cultivation practices of Ginkgo, a dominant multi-functional tree species in China. Traditional methods based on chemical analysis for determining chlorophyll content are labor-intensive and time-consuming, making them unsuitable for large-scale dynamic monitoring and high-throughput phenotyping. To accurately quantify chlorophyll content in Ginkgo seedlings under different nitrogen levels, this study employed a hyperspectral imaging camera to capture canopy hyperspectral images of seedlings throughout their annual growth periods. Reflectance derived from pure leaf pixels of Ginkgo seedlings was extracted to construct a set of spectral parameters, including original reflectance, logarithmic reflectance, and first derivative reflectance, along with spectral index combinations. A one-dimensional convolutional neural network (1D-CNN) model was then developed to estimate chlorophyll content, and its performance was compared with four common machine learning methods, including Gaussian Process Regression (GPR), Partial Least Squares Regression (PLSR), Support Vector Regression (SVR), and Random Forest (RF). The results demonstrated that the 1D-CNN model outperformed others with the first derivative spectra, achieving higher CV-R2 and lower RMSE values (CV-R2 = 0.80, RMSE = 3.4). Furthermore, incorporating spectral index combinations enhanced the model’s performance, with the 1D-CNN model achieving the best performance (CV-R2 = 0.82, RMSE = 3.3). These findings highlight the potential of the 1D-CNN model in strengthening the chlorophyll estimations, providing strong technical support for the precise cultivation and the fertilization management of Ginkgo seedlings. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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<p>The workflow for estimating chlorophyll content in <span class="html-italic">Ginkgo</span> canopies based on hyperspectral imaging and 1D-CNN.</p>
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<p>Schematic representation of the experimental layout for <span class="html-italic">Ginkgo biloba</span> seedlings under five nitrogen treatments (N0–N4). Each treatment was replicated three times (R1–R3), resulting in 15 experimental units in total. Nitrogen was applied as a topdressing in three equal doses during the growing season.</p>
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<p>Hyperspectral images of <span class="html-italic">Ginkgo biloba</span> seedlings under different nitrogen levels (N0–N4) across growth stages (T1–T5). T1 corresponds to April (early bud development stage), T2 corresponds to May (early rapid growth stage), T3 corresponds to June (middle rapid growth stage), T4 corresponds to July (late rapid growth stage), and T5 corresponds to August (plant maturity stage).</p>
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<p>A suitable 1D-CNN model for spectral reflectance is proposed.</p>
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<p>Changes in canopy reflectance and SPAD chlorophyll content of <span class="html-italic">Ginkgo</span> seedlings across different growth stages and nitrogen fertilization levels (<b>A</b>) Spectral reflectance curves of the <span class="html-italic">Ginkgo</span> canopy at different SPAD levels. The figure includes three forms of reflectance spectra: (i) original reflectance, (ii) logarithmic reflectance, and (iii) first derivative reflectance. SPAD chlorophyll content is divided into low (SPAD_low), medium (SPAD_medium), and high (SPAD_high) levels. Low SPAD corresponds to values from 27 to 45, medium SPAD ranges between 45 and 55, and high SPAD corresponds to values from 55 to 65. Reflectance across the 400 to 900 nm range varies with SPAD levels, reflecting the sensitivity of different spectral regions to chlorophyll absorption and canopy structure. (<b>B</b>) Changes in SPAD chlorophyll content of <span class="html-italic">Ginkgo</span> seedlings at different growth stages (T1–T5). T1 represents April (early bud development stage), T2 represents May (early rapid growth stage), T3 represents June (middle rapid growth stage), T4 represents July (late rapid growth stage), and T5 represents August (plant maturity stage). SPAD content fluctuates across the different growth stages. (<b>C</b>) Changes in SPAD chlorophyll content of <span class="html-italic">Ginkgo</span> seedlings under different nitrogen fertilization treatments (N0–N4). SPAD content shows significant variation across the different nitrogen levels.</p>
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<p>Correlation coefficient curve between leaf SPAD-chlorophyll content in <span class="html-italic">Ginkgo</span> seedlings and original or transformed reflectance spectra.</p>
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<p>The correlation between leaf chlorophyll content and the three best-performing indices: SR<sub>708,775</sub>, GNDVI, and mCI<sub>Green</sub>.</p>
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<p>Optimal reflectance datasets for the correlation of DVI<sub>log</sub> ((<b>A</b>), logarithmic reflectance), RVI<sub>FD</sub> ((<b>B</b>), first derivative of reflectance), NDVI<sub>FD</sub> ((<b>C</b>), first derivative of reflectance), and mRVI<sub>log</sub> ((<b>D</b>), logarithmic reflectance) with chlorophyll content. The white arrow indicates the optimal band combination.</p>
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<p>Comparison of predicted versus measured SPAD values for <span class="html-italic">Ginkgo</span> seedling canopies using various modeling approaches. Best Spectrum-Orgi, Best Spectrum-log and Best Spectrum-FD represent the best-performing spectral data (Orgi: original spectra; log: logarithmic spectra; FD: first-derivative spectra) for each regression method. VI represents vegetation indices.</p>
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18 pages, 4574 KiB  
Article
Spatio-Temporal Generalization of VIS-NIR-SWIR Spectral Models for Nitrogen Prediction in Sugarcane Leaves
by Carlos Augusto Alves Cardoso Silva, Rodnei Rizzo, Marcelo Andrade da Silva, Matheus Luís Caron and Peterson Ricardo Fiorio
Remote Sens. 2024, 16(22), 4250; https://doi.org/10.3390/rs16224250 - 14 Nov 2024
Viewed by 323
Abstract
Nitrogen fertilization is a challenging task that usually requires intensive use of resources, such as fertilizers, management and water. This study explored the potential of VIS-NIR-SWIR remote sensing for quantifying leaf nitrogen content (LNC) in sugarcane from different regions and vegetative stages. Conducted [...] Read more.
Nitrogen fertilization is a challenging task that usually requires intensive use of resources, such as fertilizers, management and water. This study explored the potential of VIS-NIR-SWIR remote sensing for quantifying leaf nitrogen content (LNC) in sugarcane from different regions and vegetative stages. Conducted in three regions of São Paulo, Brazil (Jaú, Piracicaba and Santa Maria), the research involved three experiments, one per location. The spectral data were obtained at 140, 170, 200, 230 and 260 days after cutting (DAC). From the hyperspectral data, clustering analysis was performed to identify the patterns between the spectral bands for each region where the spectral readings were made, using the Partitioning Around Medoids (PAM) algorithm. Then, the LNC values were used to generate spectral models using Partial Least Squares Regression (PLSR). Subsequently, the generalization of the models was tested with the leave-one-date-out cross-validation (LOOCV) technique. The results showed that although the variation in leaf N was small, the sensor demonstrated the ability to detect these variations. Furthermore, it was possible to determine the influence of N concentrations on the leaf spectra and how this impacted cluster formation. It was observed that the greater the average variation in N content in each cluster, the better defined and denser the groups formed were. The best time to quantify N concentrations was at 140 DAC (R2 = 0.90 and RMSE = 0.74 g kg−1). From LOOCV, the areas with sandier soil texture presented a lower model performance compared to areas with clayey soil, with R2 < 0.54. The spatial generalization of the models recorded the best performance at 140 DAC (R2 = 0.69, RMSE = 1.18 g kg−1 and dr = 0.61), decreasing in accuracy at the crop-maturation stage (260 DAC), R2 of 0.05, RMSE of 1.73 g kg−1 and dr of 0.38. Although the technique needs further studies to be improved, our results demonstrated potential, which tends to provide support and benefits for the quantification of nutrients in sugarcane in the long term. Full article
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<p>Workflow of the procedure to quantify the N concentrations in sugarcane leaves by the leaf spectral signatures.</p>
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<p>Map with the location of the collection sites, focusing on the soil classes for the municipalities of Piracicaba, Jaú and Santa Maria, characterized by soils of the types Red-Yellow Alfisol (Clayey), Red Oxisol (Sandy Loam) and Quartzarenic Neosol (Sandy Loam), respectively. The training and testing sites of the predictive models are shown. The map was prepared by the authors based on data from Rossi [<a href="#B28-remotesensing-16-04250" class="html-bibr">28</a>].</p>
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<p>Spectral curves of the sugarcane leaves at the wavelengths of 450–750 nm on dates 140, 170, 200, 230 and 260 DAC, set from the lowest to the highest LNC for the regions of Jaú, Piracicaba and Santa Maria.</p>
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<p>Clustering analysis by the PAM method from the spectral data from dates 140, 170, 200, 260 and 260 DAC.</p>
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<p>N concentrations based on the clusters formed by the leaf spectra (<b>A</b>), and the mean of the spectral curves for each cluster (<b>B</b>), for the dates 140, 170, 200, 230 and 260 DAC. The acronym JAU-STM refers to the clusters formed from the data from Jaú and Santa Maria; PIRA-STM is Piracicaba and Santa Maria; PIRA is Piracicaba, JAU is Jaú and STM is Santa Maria, according to the clusters shown in <a href="#remotesensing-16-04250-f004" class="html-fig">Figure 4</a>.</p>
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<p>Prediction of LNC by PLSR from the k-fold validation results. The number of factors that best fitted the models were 10, 7, 4 and 7 for the General and the three locations: Jaú, Piracicaba and Santa Maria, respectively.</p>
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<p>Prediction of LNC by PLSR from the k-fold validation results, where the best date to quantify the leaf N content was evaluated. The data from the three collection sites were used (Jaú, Piracicaba and Santa Maria). The number of factors that best fitted the models was 10, 7, 5, 4 and 7 for the collection dates 140, 170, 200, 260 and 260 DAC, respectively.</p>
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<p>Prediction of LNC by PLSR from the leave-one-date-out cross validation (LOOCV), which evaluated the transferability of the model to vegetative stages which did not participate in the calibration phase (blue values refer to validation and orange, to the test). The number of factors that best fitted the models was 7, 4 and 7 for Jaú, Piracicaba and Santa Maria, respectively.</p>
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25 pages, 4910 KiB  
Article
Point-to-Interval Prediction Method for Key Soil Property Contents Utilizing Multi-Source Spectral Data
by Shuyan Liu, Dongyan Huang, Lili Fu, Shengxian Wu, Yanlei Xu, Yibing Chen and Qinglai Zhao
Agronomy 2024, 14(11), 2678; https://doi.org/10.3390/agronomy14112678 - 14 Nov 2024
Viewed by 224
Abstract
Key soil properties play pivotal roles in shaping crop growth and yield outcomes. Accurate point prediction and interval prediction of soil properties serve as crucial references for making informed decisions regarding fertilizer applications. Traditional soil testing methods often entail laborious and resource-intensive chemical [...] Read more.
Key soil properties play pivotal roles in shaping crop growth and yield outcomes. Accurate point prediction and interval prediction of soil properties serve as crucial references for making informed decisions regarding fertilizer applications. Traditional soil testing methods often entail laborious and resource-intensive chemical analyses. To address this challenge, this study introduced a novel approach leveraging spectral data fusion techniques to forecast key soil properties. The initial datasets were derived from UV–visible–near-infrared (UV-Vis-NIR) spectral data and mid-infrared (MIR) spectral data, which underwent preprocessing stages involving smoothing denoising and fractional-order derivative[s] (FOD) transform techniques. After extracting the characteristic bands from both types of spectral data, three fusion strategies were developed, which were further enhanced using machine learning techniques. Among these strategies, the outer-product analysis fusion algorithm proved particularly effective in improving prediction accuracy. For point predictions, metrics such as the coefficient of determination (R2) and error metrics demonstrated significant enhancements compared to predictions based solely on single-source spectral data. Specifically, R2 values increased by 0.06 to 0.41, underscoring the efficacy of the fusion approach combined with partial least squares regression (PLSR). In addition, based on the coverage width criterion to establish reliable prediction intervals for key soil properties, including soil organic matter (SOM), total nitrogen (TN), hydrolyzed nitrogen (HN), and available potassium (AK). These intervals were developed within the framework of the kernel density estimation (KDE) interval prediction model, which facilitates the quantification of uncertainty in property estimates. For available phosphorus (AP), a preliminary assessment of its concentration was also provided. By integrating advanced spectral data fusion with machine learning, this study paves the way for more informed agricultural decision making and sustainable soil management strategies. Full article
(This article belongs to the Special Issue Advances in Soil Fertility, Plant Nutrition and Nutrient Management)
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<p>The structure of series splicing based on multi-source spectral data.</p>
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<p>The structure of the OPA based on multi-source spectral data.</p>
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<p>The structure of the GRA based on multi-source spectral data.</p>
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<p>UV-Vis-NIR and MIR reference spectral curves of soil samples: (<b>a</b>) UV-Vis-NIR; (<b>b</b>) MIR.</p>
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<p>The trend of correlation between the full-band spectrum and the property contents under different FODs: (<b>a</b>) trend of correlation between the UV-Vis-NIR band and SOM; (<b>b</b>) trend of correlation between the MIR band and SOM; (<b>c</b>) trend of correlation between the UV-Vis-NIR band and TN; (<b>d</b>) trend of correlation between the MIR band and TN; (<b>e</b>) trend of correlation between the UV-Vis-NIR band and HN; (<b>f</b>) trend of correlation between the MIR band and HN; (<b>g</b>) trend of correlation between the UV-Vis-NIR band and AK; (<b>h</b>) trend of correlation between the MIR band and AK; (<b>i</b>) trend of correlation between the UV-Vis-NIR band and AP; (<b>j</b>) trend of correlation between the MIR band and AP.</p>
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<p>The trend of correlation between the full-band spectrum and the property contents under different FODs: (<b>a</b>) trend of correlation between the UV-Vis-NIR band and SOM; (<b>b</b>) trend of correlation between the MIR band and SOM; (<b>c</b>) trend of correlation between the UV-Vis-NIR band and TN; (<b>d</b>) trend of correlation between the MIR band and TN; (<b>e</b>) trend of correlation between the UV-Vis-NIR band and HN; (<b>f</b>) trend of correlation between the MIR band and HN; (<b>g</b>) trend of correlation between the UV-Vis-NIR band and AK; (<b>h</b>) trend of correlation between the MIR band and AK; (<b>i</b>) trend of correlation between the UV-Vis-NIR band and AP; (<b>j</b>) trend of correlation between the MIR band and AP.</p>
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<p>Load plots of the first two principal components for the full-band spectral data: (<b>a</b>) UV-Vis-NIR; (<b>b</b>) MIR.</p>
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<p>Point prediction results of the testing set based on OPA-PLSR: (<b>a</b>) SOM; (<b>b</b>) TN; (<b>c</b>) HN; (<b>d</b>) AK; (<b>e</b>) AP.</p>
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<p>Heat map of the correlations among soil properties. Note: the absolute values of the PCCs are positively associated with the proportion of filled colors within the circle.</p>
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<p>Interval prediction of key soil property contents based on KDE: (<b>a</b>) SOM; (<b>b</b>) TN; (<b>c</b>) HN; (<b>d</b>) AK; (<b>e</b>) AP.</p>
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16 pages, 4593 KiB  
Article
Detection of the Pigment Distribution of Stacked Matcha During Processing Based on Hyperspectral Imaging Technology
by Qinghai He, Zhiyuan Liu, Xiaoli Li, Yong He and Zhi Lin
Agriculture 2024, 14(11), 2033; https://doi.org/10.3390/agriculture14112033 - 12 Nov 2024
Viewed by 297
Abstract
Color is a key indicator for evaluating the quality of tea during processing; various processing procedures can significantly affect the content of fat-soluble pigments of tea, which in turn affects the color and quality of finished tea. Therefore, there is an urgent demand [...] Read more.
Color is a key indicator for evaluating the quality of tea during processing; various processing procedures can significantly affect the content of fat-soluble pigments of tea, which in turn affects the color and quality of finished tea. Therefore, there is an urgent demand for the fast, non-destructive detection of pigments of stacked tea during processing. This paper presents the use of hyperspectral imaging technology (HSI), combined with machine learning algorithms, to detect chlorophyll a, chlorophyll b, and carotenoids in stacked matcha tea during processing. Firstly, a quantitative relationship between HSI data of tea and their pigment contents was developed based on regression analysis, and the results showed that exceptional prediction performance was achieved by the partial least squares regression (PLSR) algorithm combined with the feature band algorithm of competitive adaptive reweighting (CARS), and the Rp2 values of detection models of chlorophyll a, chlorophyll b and carotenoids were 0.90465, 0.92068 and 0.62666, respectively. Then, these quantitative detection models were extended to each pixel in hyperspectral images, achieving point-by-point prediction of pigment components, so the distribution of pigments of stacked tea leaves during processing procedures was successfully visualized on the processing line in situ. By integrating a hyperspectral imaging system into the real-world environment, operators can monitor pigment levels in real time and thus dynamically adjust processing parameters based on real-time data. This study enhances pigment detection efficiency in tea processing, supports process optimization, and aids in quality control. Full article
(This article belongs to the Section Agricultural Product Quality and Safety)
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<p>Hyperspectral imaging device. The upper-right figure demonstrates that the acquired images contain spatial information with spectral dimensions, and the lower-right figure shows the original images of the samples for the three processing techniques. (1) Electronic controlled conveyor belt; (2) Specim FX10 hyperspectral camera; (3) bracket; (4) computer; (5) LG-150 halogen lamp cold light source; (6) conveyor belt speed adjustment controller; (7) optical fiber; (8) blackboard; (9) sample; (10) polytetrafluoroethylene (PTFE) white board.</p>
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<p>Variation in pigment content in different processing processes of matcha. (<b>a</b>) <span class="html-italic">Chla</span>, (<b>b</b>) <span class="html-italic">Chlb</span>, (<b>c</b>) <span class="html-italic">ChlT</span>.</p>
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<p>Average spectra of different processes. The figure shows the variability of the three processes in terms of average spectra.</p>
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<p>Average spectra of matcha in each processing procedure after pretreatment.</p>
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<p>Average spectra of matcha in each processing procedure after pretreatment.</p>
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<p>Distribution of tea leaves under different processing steps in three principal component spaces. The figure shows the spectra of these three processes form distinct separations and clusters in 3D space.</p>
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<p>Scatter diagram of optimal modeling effect of three pigments.</p>
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<p>Distribution map of important wavelength for determination of three pigments. The figure shows the overlap of the feature-selected bands with the pigment spectral characteristic intervals.</p>
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<p>Visualization of pigment distribution in tea during the three processing procedures.</p>
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29 pages, 5844 KiB  
Article
Early Modeling of the Upcoming Landsat Next Constellation for Soybean Yield Prediction Under Varying Levels of Water Availability
by Luís Guilherme Teixeira Crusiol, Marcos Rafael Nanni, Rubson Natal Ribeiro Sibaldelli, Liang Sun, Renato Herrig Furlanetto, Sergio Luiz Gonçalves, Norman Neumaier and José Renato Bouças Farias
Remote Sens. 2024, 16(22), 4184; https://doi.org/10.3390/rs16224184 - 9 Nov 2024
Viewed by 883
Abstract
The upcoming Landsat Next will provide more frequent land surface observations at higher spatial and spectral resolutions that will greatly benefit the agricultural sector. Early modeling of the upcoming Landsat Next products for soybean yield prediction is essential for long-term satellite monitoring strategies. [...] Read more.
The upcoming Landsat Next will provide more frequent land surface observations at higher spatial and spectral resolutions that will greatly benefit the agricultural sector. Early modeling of the upcoming Landsat Next products for soybean yield prediction is essential for long-term satellite monitoring strategies. In this context, this article evaluates the contribution of Landsat Next’s improved spectral resolution for soybean yield prediction under varying levels of water availability. Ground-based hyperspectral data collected over five cropping seasons at the Brazilian Agricultural Research Corporation were resampled to Landsat Next spectral resolution. The spectral dataset (n = 384) was divided into calibration and external validation datasets and investigated using three strategies for soybean yield prediction: (1) using the reflectance from each spectral band; (2) using existing and new vegetation indices developed based on three general equations: Normalized Difference Vegetation Index (NDVI-like), Band Ratio Vegetation Index (RVI-like), and Band Difference Vegetation Index (DVI-like), replacing the traditional spectral bands by all possible combinations between two bands for index calculation; and (3) using a partial least squares regression (PLSR) model composed of all Landsat Next spectral bands, in comparison to PLSR models using Landsat OLI and Sentienel-2 MSI bands. The results show the distribution of the new spectral bands over the most prominent changes in leaf reflectance due to water deficit, particularly in the visible and shortwave infrared spectrum. (1) Band 18 (centered at 1610 nm) had the highest correlation with yield (R2 = 0.34). (2) A new vegetation index, called Normalized Difference Shortwave Vegetation Index (NDSWVI), is proposed and calculated from bands 19 and 20 (centered at 2028 and 2108 nm). NDSWVI showed the best performance (R2 = 0.37) compared to traditional existing and new vegetation indices. (3) The PLSR model gave the best results (R2 = 0.65), outperforming the Landsat OLI and Sentinel-2 MSI sensors. The improved spectral resolution of Landsat Next is expected to contribute to improved crop monitoring, especially for soybean crops in Brazil, increasing the sustainability of the production systems and strengthening food security in Brazil and globally. Full article
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<p>Spectral bandpasses for the sensors on all Landsat satellites [<a href="#B2-remotesensing-16-04184" class="html-bibr">2</a>].</p>
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<p>Location of Embrapa Soja in the context of Brazil, Paraná State, and the municipality of Londrina; experimental area overview; and description of the weather station and treatment plots: irrigated (IRR), non-irrigated (NIRR) and water deficit induced at vegetative (WDV) and reproductive (WDR) stages.</p>
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<p>Climatic water balance at 10-day periods in the WDV, WDR, NIRR, and IRR treatments in 2016/2017, 2017/2018, 2018/2019, 2022/2023, and 2023/2024 cropping seasons.</p>
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<p>Soil moisture content (%) at 0–20 cm and 20–40 cm depths in the 2016/2017, 2017/2018, 2018/2019, 2022/2023 and 2023/2024 cropping seasons at the transition from vegetative to reproductive stages (<b>a</b>) and at the R5 phenological stages towards the maturity stage (<b>b</b>). Means followed by the same letter among treatments within each depth and on each date do not differ by Tukey’s test (<span class="html-italic">p</span> ≤ 0.05).</p>
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<p>Soybean yield (kg ha<sup>−1</sup>) in the 2016/2017, 2017/2018, 2018/2019, 2022/2023 and 2023/2024 cropping seasons. Means followed by the same letter do not differ by the Tukey test (<span class="html-italic">p</span> ≤ 0.05).</p>
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<p>Spectral assessment in the field (<b>a</b>), detail of spectroradiometer (<b>b</b>), and the plant probe device (<b>c</b>). Photo by Décio de Assis—Embrapa Soja.</p>
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<p>Flowchart of the methodology adopted for spectral data processing and yield modeling.</p>
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<p>Yield values (<b>a</b>) and principal component analysis of the spectral response in the correspondent Landsat Next spectral bands (<b>b</b>) from samples collected in the 2016/2017, 2017/2018, 2018/2019, 2023/2023, and 2023/2024 cropping seasons pooled into the calibration (red squares) and external validation (green dots) datasets.</p>
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<p>Soybean spectral response across Vis-NIR-SWIR wavelengths in the IRR and WDR treatments (<b>a</b>) and the percentage of reflectance increasing from WDR treatment in relation to IRR with the delimitation of the correspondent Landsat Next spectral bands (color bars—(<b>b</b>)).</p>
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<p>Principal component analysis of the spectral response in the correspondent Landsat Next spectral bands of soybean crop under the evaluated water conditions in 2016/2017 (<b>a</b>), 2017/2018 (<b>b</b>), 2018/2019 (<b>c</b>), 2022/2023 (<b>d</b>) and 2023/2024 (<b>e</b>) cropping seasons.</p>
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<p>Correlation between soybean yield and Landsat Next spectral bands reflectance using the calibration dataset.</p>
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<p>Correlation between observed and predicted values of soybean yield through linear regression between yield and band 18 from Landsat Next.</p>
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<p>Coefficient of determination from the linear regression between soybean yield and all possible combinations for calculating two-band vegetation indices using Landsat Next spectral band reflectance from the training dataset (288 samples) under normalized difference (<b>a</b>), ratio (<b>b</b>), and difference (<b>c</b>) equations.</p>
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<p>Correlation between observed and predicted values of soybean yield through linear regression between yield and the outstanding NDVI (<b>a</b>), RVI (<b>b</b>), and DVI (<b>c</b>).</p>
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<p>Correlation between observed and predicted values of soybean yield through PLSR at the calibration and cross-validation (leave-one-out) stage (<b>a</b>) using 75% of data (288 samples—training dataset) and validated with the remaining 25% of the data (96 samples—testing dataset) at the external validation stage (<b>b</b>).</p>
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<p>Regression coefficients of PLSR for soybean grain yield prediction at R5 stage in a model developed using 75% of data (288 samples—calibration dataset).</p>
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<p>Correlation between observed and predicted values of soybean yield using band 18; NDVI calculated with bands 19 and 20, RVI calculated with bands 19 and 20; DVI calculated with bands 4 and 9; PLSR model using all Landsat Next bands; PLSR model using all Landsat OLI bands; and PLSR model using all Sentinel-2 MSI bands.</p>
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<p>Yield values from samples collected in the 2016–2017, 2017–2018, 2018–2019, 2023–2023 and 2023–2024 cropping seasons.</p>
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<p>Correlation between observed and predicted values of soybean yield through PLSR at the calibration and cross-validation (leave-one-out) steps using spectral response in the correspondent Landsat Next spectral bands in 2016–2017 (<b>a</b>), 2017–2018 (<b>b</b>), 2018–2019 (<b>c</b>), 2022–2023 (<b>d</b>) and 2023–2024 (<b>e</b>) cropping seasons.</p>
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<p>Statistics at the cross-validation step for soybean prediction using Landsat Next spectral bands under PLSR modeling for each soybean genotype within 2016/2017, 2017/2018, 2018/2019, 2022/2023, and 2023/2024 cropping seasons.</p>
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18 pages, 4445 KiB  
Article
Quantitative Analysis of Amorphous Form in Indomethacin by Near Infrared Spectroscopy Combined with Partial Least Squares Regression Analysis
by Mingdi Liu, Rui Fu, Jichao Liu, Ping Song, Haichao Li, Weibing Dong and Zan Sun
Molecules 2024, 29(22), 5290; https://doi.org/10.3390/molecules29225290 - 8 Nov 2024
Viewed by 340
Abstract
Indomethacin (INDO) is a synthetic non-steroidal antipyretic, analgesic, and anti-inflammatory drug that commonly exists in both amorphous and crystalline states. Its amorphous state (A-INDO) is utilized by pharmaceutical companies as an active pharmaceutical ingredient (API) in the production of INDO drugs due to [...] Read more.
Indomethacin (INDO) is a synthetic non-steroidal antipyretic, analgesic, and anti-inflammatory drug that commonly exists in both amorphous and crystalline states. Its amorphous state (A-INDO) is utilized by pharmaceutical companies as an active pharmaceutical ingredient (API) in the production of INDO drugs due to its higher apparent solubility and bioavailability. The crystal state also encompasses various crystal forms such as the α-crystal form (α-INDO) and γ-crystal form (γ-INDO), with the highly crystalline and insoluble γ-INDO being commercially available. A-INDO, existing in a thermodynamically high-energy state, is susceptible to several factors during the preparation, storage, and transportation of API leading to its conversion into γ-INDO, thus impacting the bioavailability and efficacy of INDO drugs. Therefore, quantitative analysis of the A-INDO/γ-INDO content in INDO API becomes essential for controlling the production quality of INDO. The primary objective of this study is to investigate the feasibility of NIR for the quantitative analysis of A-INDO in INDO API, and to further elucidate its quantitative analysis mechanism. The NIR spectral data were collected for A-INDO and γ-INDO binary mixture samples with different resolutions, and these spectra were then selected and reconstructed using the interval partial least square (iPLS) method. Different pretreatment methods were employed to enhance the reconstructed spectra by highlighting relevant eigen information while eliminating invalid information caused by environmental factors or physical characteristics of samples. The most suitable PLSR model for quantitative analysis of A-INDO within the range of 0.0000–100.0000% w/w% was established, screened, and validated. From various perspectives, including distribution of spectral effective information, impact of resolution on PLSR model performance, variance contribution/cumulative variance contribution of PLSR model principal components (PCs), PCI loadings, relationship between spectral scores, and A-INDO content, feasibility assessment was conducted for the quantitative analysis of A-INDO in INDO using NIR spectroscopy. Additionally, a detailed investigation on the quantitative analysis mechanism of the optimal PLSR model was undertaken including the correlation between the characteristic peaks of spectra and information regarding hydrogen groups or hydrogen bonds in A-INDO or γ-INDO molecules. This study aims to provide theoretical support for the quantitative analysis of A-INDO in INDO API as well as serve as a reliable reference method for API quantification and quality control in similar drugs. Full article
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<p>Chemical structure of indomethacin.</p>
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<p>PXRD pattern of different INDO solid forms, (A) γ-INDO, (B) M-INDO, (C) A-INDO.</p>
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<p>DCS curves of different INDO solid forms.</p>
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<p>ATR-FTIR spectra of different INDO solid forms.</p>
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<p>NIR spectra of different INDO solid forms.</p>
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<p>NIR spectra of binary mixture samples of INDO. (<b>A</b>,<b>B</b>) are the NIR spectra at 10,000–4000 cm<sup>−1</sup> and 6000–4000 cm<sup>−1</sup> of binary mixture samples (2 cm<sup>−1</sup>), respectively.</p>
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<p>NIR spectra of binary mixture samples of INDO. (<b>A</b>,<b>B</b>) are the NIR spectra at 10,000–4000 cm<sup>−1</sup> and 6000–4000 cm<sup>−1</sup> of binary mixture samples (2 cm<sup>−1</sup>), respectively.</p>
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<p>The RMSECV of PLSR models. (<b>A1</b>–<b>A3</b>) are the RMSECV vs. components of global PLSR models with different resolutions; (<b>B1</b>–<b>B3</b>) are the RMSECV of IPLS interval models with different resolutions, while the dotted line is the RMSECV for the global PLSR model. Italic numbers are optimal principal components of interval models.</p>
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<p>The RMSECV of PLSR models. (<b>A1</b>–<b>A3</b>) are the RMSECV vs. components of global PLSR models with different resolutions; (<b>B1</b>–<b>B3</b>) are the RMSECV of IPLS interval models with different resolutions, while the dotted line is the RMSECV for the global PLSR model. Italic numbers are optimal principal components of interval models.</p>
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<p>PLSR model calibration curves for NIR data with different resolutions. (<b>A1</b>–<b>A3</b>) are optimal iPLS model calibration curves of NIR data with different resolutions, (<b>B1</b>–<b>B3</b>) are PLSR model calibration curves of NIR data with different resolutions of 9000–4000 cm<sup>−1</sup>.</p>
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<p>The loadings (<b>A1</b>–<b>A5</b>) and the scores (<b>B1</b>–<b>B5</b>) of the PLSR model established after pretreated SNV + WT in 9000–4000 cm<sup>−1</sup> with resolution 4 cm<sup>−1</sup>.</p>
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<p>The loadings (<b>A1</b>–<b>A5</b>) and the scores (<b>B1</b>–<b>B5</b>) of the PLSR model established after pretreated SNV + WT in 9000–4000 cm<sup>−1</sup> with resolution 4 cm<sup>−1</sup>.</p>
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<p>Hydrogen bonds in γ-INDO.</p>
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<p>Samples used to establish and verify the quantitative models. Samples contained A-INDO and γ-INDO content of A-INDO were 0.0000, 4.9955, 10.0150, 15.0415, 20.0200, 25.0050, 30.0080, 34.9760, 40.0440, 45.0255, 50.0100, 54.9915, 59.9740, 65.0340, 70.0360, 74.9825, 79.9860, 85.0230, 89.9660, 95.0105,100.0000, 5.0000, 15.0005, 25.0000, 34.9995, 45.0020, and 70.0030 <span class="html-italic">w</span>/<span class="html-italic">w</span>%, respectively.</p>
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17 pages, 5391 KiB  
Article
Nondestructive Identification of Internal Potato Defects Using Visible and Short-Wavelength Near-Infrared Spectral Analysis
by Dennis Semyalo, Yena Kim, Emmanuel Omia, Muhammad Akbar Andi Arief, Haeun Kim, Eun-Yeong Sim, Moon S. Kim, Insuck Baek and Byoung-Kwan Cho
Agriculture 2024, 14(11), 2014; https://doi.org/10.3390/agriculture14112014 - 8 Nov 2024
Viewed by 436
Abstract
Potatoes are a staple food crop consumed worldwide, with their significance extending from household kitchens to large-scale food processing industries. Their market value and quality are often compromised by various internal defects such as pythium, bruising, internal browning, hollow heart, gangrene, blackheart, internal [...] Read more.
Potatoes are a staple food crop consumed worldwide, with their significance extending from household kitchens to large-scale food processing industries. Their market value and quality are often compromised by various internal defects such as pythium, bruising, internal browning, hollow heart, gangrene, blackheart, internal sprouting, and dry rot. This study aimed to classify internal-based defects and investigate the quantification of internal defective areas in potatoes using visible and short-wavelength near-infrared spectroscopy. The acquisition of the spectral data of potato tubers was performed using a spectrometer with a wavelength range of 400–1100 nm. The classification of internal-based defects was performed using partial least squares discriminant analysis (PLS-DA), while the quantification of the internal defective area was based on partial least squares regression (PLSR). The PLS-DA double cross-validation accuracy for the distinction between non-defective and all internally defective potatoes was 90.78%. The double cross-validation classification accuracy achieved for pythium, bruising, and non-defective categories was 91.03%. The internal defective area model based on PLSR achieved a correlation coefficient of double cross-validation of 0.91 and a root mean square error of double cross-validation of 0.85 cm2. This study makes a valuable contribution to advancing nondestructive techniques for evaluating internal defects in potatoes. Full article
(This article belongs to the Section Agricultural Product Quality and Safety)
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<p>Experimental field of potato tubers in Pyeongchang, Gangwon-do, South Korea.</p>
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<p>Top view of the inside of the spectral data acquisition chamber: light source (<b>A</b>), potato tuber (<b>B</b>), and cooling fan (<b>C</b>).</p>
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<p>Internal defects in potatoes: non-defective (<b>A</b>), pythium (<b>B</b>), dry rot (<b>C</b>), bruising (<b>D</b>), gangrene (<b>E</b>), blackheart (<b>F</b>), internal browning (<b>G</b>), hollow heart (<b>H</b>), and internal sprouting (<b>I</b>).</p>
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<p>A flow chart for the major steps performed during internal defect area determination. ROI is the region of interest.</p>
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<p>Mean spectra of each internal defect in potatoes.</p>
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<p>Calibration classification plot for sound (0) and defective potatoes (1). The numbers of observation spectra for total, sound, and defective potatoes were 341, 114, and 227, respectively.</p>
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<p>Double cross-validation classification plot for sound (0) and defective potatoes (1). The numbers of observation spectra for total, sound, and defective potatoes were 141, 47, and 94, respectively.</p>
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<p>Beta coefficient plot for the detection of sound and defective potatoes.</p>
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<p>Calibration classification plot for non-defective (0), bruising (1), and pythium (2) defective categories in potatoes. The numbers of observation spectra for total, non-defective, bruising, and pythium potato categories were 268, 168, 78, and 22, respectively.</p>
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<p>Double cross-validation classification plot for non-defective (0), bruising (1), and pythium (2) defect categories in potatoes. The numbers of observation spectra for total, non-defective, bruising, and pythium potato categories were 115, 72, 33, and 10, respectively.</p>
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<p>Beta coefficient plot for the classification of internal-based defect categories in potatoes.</p>
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<p>Calibration and double cross-validation plot for the internal defective area in potatoes. The number of observation spectra: n = 383. Rv is the correlation coefficient of double cross-validation.</p>
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<p>Beta coefficient plot for the internal defective area in potatoes.</p>
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18 pages, 2681 KiB  
Article
The Development of a Non-Invasive Screening Method Based on Serum microRNAs to Quantify the Percentage of Liver Steatosis
by Polina Soluyanova, Guillermo Quintás, Álvaro Pérez-Rubio, Iván Rienda, Erika Moro, Marcel van Herwijnen, Marcha Verheijen, Florian Caiment, Judith Pérez-Rojas, Ramón Trullenque-Juan, Eugenia Pareja and Ramiro Jover
Biomolecules 2024, 14(11), 1423; https://doi.org/10.3390/biom14111423 - 8 Nov 2024
Viewed by 557
Abstract
Metabolic dysfunction-associated steatotic liver disease (MASLD) is often asymptomatic and underdiagnosed; consequently, there is a demand for simple, non-invasive diagnostic tools. In this study, we developed a method to quantify liver steatosis based on miRNAs, present in liver and serum, that correlate with [...] Read more.
Metabolic dysfunction-associated steatotic liver disease (MASLD) is often asymptomatic and underdiagnosed; consequently, there is a demand for simple, non-invasive diagnostic tools. In this study, we developed a method to quantify liver steatosis based on miRNAs, present in liver and serum, that correlate with liver fat. The miRNAs were analyzed by miRNAseq in liver samples from two cohorts of patients with a precise quantification of liver steatosis. Common miRNAs showing correlation with liver steatosis were validated by RT-qPCR in paired liver and serum samples. Multivariate models were built using partial least squares (PLS) regression to predict the percentage of liver steatosis from serum miRNA levels. Leave-one-out cross validation and external validation were used for model selection and to estimate predictive performance. The miRNAseq results disclosed (a) 144 miRNAs correlating with triglycerides in a set of liver biobank samples (n = 20); and (b) 124 and 102 miRNAs correlating with steatosis by biopsy digital image and MRI analyses, respectively, in liver samples from morbidly obese patients (n = 24). However, only 35 miRNAs were common in both sets of samples. RT-qPCR allowed to validate the correlation of 10 miRNAs in paired liver and serum samples. The development of PLS models to quantitatively predict steatosis demonstrated that the combination of serum miR-145-3p, 122-5p, 143-3p, 500a-5p, and 182-5p provided the lowest root mean square error of cross validation (RMSECV = 1.1, p-value = 0.005). External validation of this model with a cohort of mixed MASLD patients (n = 25) showed a root mean squared error of prediction (RMSEP) of 5.3. In conclusion, it is possible to predict the percentage of hepatic steatosis with a low error rate by quantifying the serum level of five miRNAs using a cost-effective and easy-to-implement RT-qPCR method. Full article
(This article belongs to the Special Issue Liver Damage and Associated Metabolic Disorders)
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<p>Identification of miRNAs showing correlation with the percentage of hepatic steatosis. Human liver samples from two cohorts of patients were analyzed by miRNAseq. The normalized number of reads was correlated with the % of liver steatosis as assessed by different linear methods. (<b>A</b>) Volcano plots showing miRNAs with an association of r ≥ 0.34 and <span class="html-italic">p</span>-value ≤ 0.1 as red dots. (<b>Left</b> and <b>middle</b> plots) liver samples from morbidly obese BS patients. (<b>Right</b> plot) liver samples from liver biobank cohort. (<b>B</b>) Venn diagram displaying the 35 miRNAs showing correlation with the % of steatosis in the two cohorts of patients.</p>
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<p>Correlation of representative liver and serum miRNAs with steatosis. Correlation analysis of miR-500a-5p (<b>A</b>) and miR-192-5p (<b>B</b>) levels in liver (<b>above</b> dotted line) and serum (<b>below</b> dotted line) with steatosis assessed by TG content (liver biobank) or by liver HE-stained biopsy WSI and MRI-PDFF analyses (morbidly obese patients (OB)). *, <span class="html-italic">p</span> &lt; 0.05; **, <span class="html-italic">p</span> &lt; 0.01; ***, <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>PLS regression, model selection, and validation. Predictive modelling of liver steatosis using PLS regression and assessment of the statistical significance of the CV error by permutation testing in the initial model with 10 miRNAs (<b>A</b>) and after 5 feature selection (<b>B</b>). (<b>C</b>) Results predicted in an external validation set using the PLS model built after 5 feature selection.</p>
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19 pages, 14249 KiB  
Article
Combining UAV Multispectral and Thermal Infrared Data for Maize Growth Parameter Estimation
by Xingjiao Yu, Xuefei Huo, Long Qian, Yiying Du, Dukun Liu, Qi Cao, Wen’e Wang, Xiaotao Hu, Xiaofei Yang and Shaoshuai Fan
Agriculture 2024, 14(11), 2004; https://doi.org/10.3390/agriculture14112004 - 7 Nov 2024
Viewed by 530
Abstract
The leaf area index (LAI) and leaf chlorophyll content (LCC) are key indicators of crop photosynthetic efficiency and nitrogen status. This study explores the integration of UAV-based multispectral (MS) and thermal infrared (TIR) data to improve the estimation of maize LAI and LCC [...] Read more.
The leaf area index (LAI) and leaf chlorophyll content (LCC) are key indicators of crop photosynthetic efficiency and nitrogen status. This study explores the integration of UAV-based multispectral (MS) and thermal infrared (TIR) data to improve the estimation of maize LAI and LCC across different growth stages, aiming to enhance nitrogen (N) management. In field trials from 2022 to 2023, UAVs captured canopy images of maize under varied water and nitrogen treatments, while the LAI and LCC were measured. Estimation models, including partial least squares regression (PLS), convolutional neural networks (CNNs), and random forest (RF), were developed using spectral, thermal, and textural data. The results showed that MS data (spectral and textural features) had strong correlations with the LAI and LCC, and CNN models yielded accurate estimates (LAI: R2 = 0.61–0.79, RMSE = 0.02–0.38; LCC: R2 = 0.63–0.78, RMSE = 2.24–0.39 μg/cm2). Thermal data reflected maize growth but had limitations in estimating the LAI and LCC. Combining MS and TIR data significantly improved the estimation accuracy, increasing R2 values for the LAI and LCC by up to 23.06% and 19.01%, respectively. Nitrogen dilution curves using estimated LAIs effectively diagnosed crop N status. Deficit irrigation reduced the N uptake, intensifying the N deficiency, while proper water and N management enhanced the LAI and LCC. Full article
(This article belongs to the Section Digital Agriculture)
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<p>Maize experiment conducted in the Agricultural Demonstration Zone of Wugong County, Shaanxi Province, China. Planting zoning map (<b>a</b>) and morphological characteristics of summer maize throughout the growth period (<b>b</b>).</p>
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<p>Evaluation of maize LAI and LCC estimation models based on multispectral data. (<b>a</b>,<b>b</b>) represent the evaluation metrics of different models for estimating LAI performance (R<sup>2</sup> and RMSE, respectively); (<b>c</b>,<b>d</b>) represent the evaluation metrics of different models for estimating LCC performance (R<sup>2</sup> and RMSE, respectively).</p>
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<p>Evaluation of maize LAI and LCC estimation models based on multispectral data. (<b>a</b>,<b>b</b>) represent the evaluation metrics of different models for estimating LAI performance (R<sup>2</sup> and RMSE, respectively); (<b>c</b>,<b>d</b>) represent the evaluation metrics of different models for estimating LCC performance (R<sup>2</sup> and RMSE, respectively).</p>
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<p>The R<sup>2</sup> and RMSE in the estimation of LAI using machine learning algorithms.</p>
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<p>The R<sup>2</sup> and RMSE in the estimation of LCC using machine learning algorithms.</p>
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<p>Dynamic estimation of LAI and LCC using CNN model based on the fusion of MS and TIR data.</p>
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<p>Spatial distribution maps of LAI and LCC estimated based on UAV multispectral and thermal infrared information across six growth stages.</p>
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<p>Spatial distribution maps of LAI and LCC estimated based on UAV multispectral and thermal infrared information across six growth stages.</p>
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<p>Dynamic changes in nitrogen nutrition index (NNI) under different nitrogen application rates across various water treatments for 2022–2023. (<b>a</b>–<b>c</b>) are calculated NNIs based on experimental measurements under W0, W1, and W2 treatments; (<b>d</b>–<b>f</b>) are calculated NNIs based on remote sensing estimation under W0, W1, and W2 treatments.</p>
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15 pages, 3638 KiB  
Article
Sustainability of the Linkages Between Water–Energy–Food Resources Based on Structural Equation Modeling Under Changing Climate: A Case Study of Narok County (Kenya) and Vhembe District Municipality (South Africa)
by Nosipho Zwane, Joel O. Botai, Christina M. Botai and Tafadzwanashe Mabhaudhi
Sustainability 2024, 16(22), 9689; https://doi.org/10.3390/su16229689 - 7 Nov 2024
Viewed by 683
Abstract
Due to the current and predicted increase in the global demand for water–energy–food (WEF) resources, as well as the inevitable linkages between the WEF sectors and sustainable development, the WEF nexus is rapidly being recognized as a method to effectively manage sustainable development. [...] Read more.
Due to the current and predicted increase in the global demand for water–energy–food (WEF) resources, as well as the inevitable linkages between the WEF sectors and sustainable development, the WEF nexus is rapidly being recognized as a method to effectively manage sustainable development. Many African countries still face challenges in terms of the demand for and accessibility of WEF resources. For this reason, a comparative study of two sites (Narok County and Vhembe District Municipality), which exhibit similar socio-economic, environmental, and technological circumstances, was undertaken. In the present study, we considered 218 questionnaire responses, which we analyzed using partial least squares structural equation modeling (SEM) based on the WEF nexus constructs. This study is anchored on the null hypothesis (H0), whereby no interdependencies exist between the state of the climate and WEF resources, as constrained by sustainable development options. The results show that the proposed hypothesis does not hold, but rather, an alternative hypothesis (Ha)—there exist linkages between climate change and WEF resources—holds. This is demonstrated by the descriptive statistics indicating p values < 0.05 for both the t-test and the Bartlett test. Furthermore, analysis from the multi-regression, particularly for the model where we combined the sites, showed p values < 0.05 and higher adjusted r-squared values, which denoted a better fit. The communities in both study sites agree that the regions have experienced a scarcity of WEF resources due to climate change. The results show that climate change is an intrinsic part of the developmental options for the sustainable livelihood of both study sites, which aligns with the 2030 UN agenda on sustainable development goals targets. Moreover, the sustainable management of natural resources that are people- and planet-centric is crucial to climate change adaptation and mitigation, social justice, equity, and inclusion. The SEM results showed with significant confidence that the water, energy, and food sectors are closely interconnected; however, their impact on climate and sustainability is significantly different. Food has a direct positive impact on climate and sustainability, while both water and energy have an indirect negative impact. Moreover, the climate construct indicated a significant direct link to sustainability for all the relationships explored. This is particularly true because, in most underdeveloped countries, sustainable development and societal wellbeing heavily rely on goods and services derived from natural resources and the environment. This study contributes to the nexus modeling research field by introducing SEM as an innovative methodology over a single equation modeling framework in analyzing variables that have complex interrelationships, facilitating advanced WEF nexus resource governance. Full article
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<p>Hypothesized structural equation model.</p>
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<p>Distribution of responses in the study sites (the values are in percentages).</p>
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<p>Combined distribution of quantitative survey responses from both study sites.</p>
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<p>Multiple correspondence analysis draws confidence ellipses around the categories of all variables used.</p>
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<p>Relationship 1—Water, energy, climate, and sustainability model shown in (<b>a</b>) and the bootstrapped model in (<b>b</b>). Asterisk is the significance level. * <span class="html-italic">p</span> &lt; 0.05 ** <span class="html-italic">p</span> &lt; 0.01 *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Reliability graph for relationship 1—Water, energy, climate, and sustainability. The blue dashed line is the threshold value for reliability metrics.</p>
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<p>Relationship 2—Water, food, climate, and sustainability model shown in (<b>a</b>) and the bootstrapped model in (<b>b</b>). Asterisk is the significance level, see footer in <a href="#sustainability-16-09689-t003" class="html-table">Table 3</a>.</p>
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<p>Reliability graph for relationship 2—Water, food, climate, and sustainability.</p>
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<p>Relationship 3—Energy, food, climate, and sustainability model shown in (<b>a</b>) and the bootstrapped model in (<b>b</b>). Asterisk is the significance level, refer to the footer in <a href="#sustainability-16-09689-t003" class="html-table">Table 3</a>.</p>
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<p>Reliability graph for relationship 3—energy, food, climate, and sustainability.</p>
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18 pages, 8365 KiB  
Article
Prediction of Delamination Defects in Drilling of Carbon Fiber Reinforced Polymers Using a Regression-Based Approach
by Mohammad Ghasemian Fard, Hamid Baseri, Aref Azami and Abbas Zolfaghari
Machines 2024, 12(11), 783; https://doi.org/10.3390/machines12110783 - 6 Nov 2024
Viewed by 360
Abstract
Carbon fiber-reinforced polymer (CFRP) structures have been increasingly used in various aerospace sectors due to their outstanding mechanical properties in recent years. However, the poor machinability of CFRP plates, combined with the inhomogeneous behavior of fibers, poses a challenge for manufacturers and researchers [...] Read more.
Carbon fiber-reinforced polymer (CFRP) structures have been increasingly used in various aerospace sectors due to their outstanding mechanical properties in recent years. However, the poor machinability of CFRP plates, combined with the inhomogeneous behavior of fibers, poses a challenge for manufacturers and researchers to define the critical factors and conditions necessary to ensure the quality of holes in CFRP structures. This study aims to analyze the effect of drilling parameters on CFRP delamination and to predict hole quality using a regression-based approach. The design of the experiment (DOE) was conducted using Taguchi’s L9 3-level orthogonal array. The input drilling variables included the feed rate, spindle speed, and three different drill types. A regression-based model using partial least squares (PLS) was developed to predict delamination defects during the drilling of CFRP plates. The PLS model demonstrated high accuracy in predicting delamination defects, with a Mean Squared Error (MSE) of 0.0045, corresponding to an accuracy of approximately 99.6%, enabling the rapid estimation of delamination. The model’s predictions were closely aligned with the experimental results, although some deviations were observed due to tool inefficiencies, particularly with end mill cutters. These findings offer valuable insights for researchers and practitioners, enhancing the understanding of delamination in CFRPs and identifying areas for further investigation. Full article
(This article belongs to the Special Issue Recent Advances in Surface Integrity with Machining and Milling)
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<p>Experimental set-up of CFRP plate drilling.</p>
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<p>Three types of drills used: (<b>a</b>) solid carbide drill, (<b>b</b>) cobalt end mill, and (<b>c</b>) step drill.</p>
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<p>Detailed PLS regression model architecture.</p>
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<p>Measurement scheme for the maximum diameter of damages (Dmax).</p>
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<p>Comparison between (<b>a</b>) experimental results and (<b>b</b>) PLS regression results for delamination defect made by solid carbide drill.</p>
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<p>Comparison between (<b>a</b>) experimental results and (<b>b</b>) PLS regression results for delamination defect made by cobalt end mill.</p>
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<p>Comparison between (<b>a</b>) experimental results and (<b>b</b>) PLS regression results for delamination defect made by step drill.</p>
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<p>Visual comparison of delamination defects for Tool (<b>a</b>), Tool (<b>b</b>), and Tool (<b>c</b>) at 3000 RPM and 0.79 mm/rev feed rate.</p>
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<p>Comparison between experimental outputs and PLS regression prediction.</p>
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<p>S/N ratio plot for delamination factor.</p>
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<p>Contour plots showing the effect of spindle speed and feed rate on the delamination factor (Fd) for Tools (<b>a</b>) solid carbide drill, (<b>b</b>) end mill, and (<b>c</b>) step drill.</p>
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