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Search Results (19,866)

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10 pages, 523 KiB  
Brief Report
DNA Metabarcoding Approach as a Potential Tool for Supporting Official Food Control Programs: A Case Study
by Anna Mottola, Chiara Intermite, Roberta Piredda, Lucilia Lorusso, Lucia Ranieri, Stefania Carpino, Gaetano Vitale Celano and Angela Di Pinto
Foods 2024, 13(18), 2941; https://doi.org/10.3390/foods13182941 (registering DOI) - 17 Sep 2024
Abstract
Food authentication significantly impacts consumer health and the credibility of Food Business Operators (FBOs). As European regulations mandate the verification of food authenticity and supply chain integrity, competent authorities require access to innovative analytical methods to identify and prevent food fraud. This study [...] Read more.
Food authentication significantly impacts consumer health and the credibility of Food Business Operators (FBOs). As European regulations mandate the verification of food authenticity and supply chain integrity, competent authorities require access to innovative analytical methods to identify and prevent food fraud. This study utilizes the DNA metabarcoding approach on meat preparations, sampled during an official control activity. It assesses animal and plant composition by amplifying DNA fragments of the 12S rRNA and trnL (UAA) genes, respectively. The results not only confirmed the declared species but also revealed undeclared and unexpected taxa in products labelled as containing a single animal species and various unspecified plant species. Notable findings such as the presence of Murinae, Sus scrofa, Ovis aries, and Pisum sativum could raise public health concerns, compromise consumer choices made for ethical or religious reasons, and reflect the hygienic conditions of the processing plant. This study demonstrates that the DNA metabarcoding approach looks to be a promising support tool for official control authorities to ensure food authenticity and safety, and to develop risk profiles along the supply chain. Full article
(This article belongs to the Section Food Quality and Safety)
13 pages, 560 KiB  
Article
The Impact of Storytelling About an Innovative and Sustainable Organic Beef Production System on Product Acceptance, Preference, and Satisfaction
by Beata Ewa Najdek, Nora Chaaban, Margrethe Therkildsen and Barbara Vad Andersen
Foods 2024, 13(18), 2940; https://doi.org/10.3390/foods13182940 (registering DOI) - 17 Sep 2024
Abstract
Food labels and storytelling are marketing tools used by the food industry to highlight and communicate important product characteristics to consumers. By using these tools, food companies can influence consumers’ attitudes toward the product and potentially the likelihood of purchase. In the present [...] Read more.
Food labels and storytelling are marketing tools used by the food industry to highlight and communicate important product characteristics to consumers. By using these tools, food companies can influence consumers’ attitudes toward the product and potentially the likelihood of purchase. In the present study, we investigated how storytelling about an innovative and sustainable organic beef production system influenced participants’ preference and acceptance of a veal steak product and, further, if some information characteristics were more important than others for consumer satisfaction. Without being aware that the samples were identical, participants (n = 224) tasted two veal steak samples: one steak sample was presented with information about the production system, and the other without information. Results showed that when the steak sample was presented with product information, compared to without information, it received significantly higher hedonic ratings (overall liking, liking of flavor, and liking of texture). This was likewise reflected in a greater preference for the steak sample when presented with product information. Furthermore, product information was found to positively impact the participants’ satisfaction with the steak sample regardless of their preference. Overall, our results suggest that the use of storytelling about the innovative and sustainable product system for veal steaks can positively influence consumers’ attitudes toward the product. Full article
(This article belongs to the Special Issue Sensory Evaluation of Foods: Current Practice and Future Perspectives)
18 pages, 4242 KiB  
Article
Sensitivity Profile to Pyraclostrobin and Fludioxonil of Alternaria alternata from Citrus in Italy
by Giuseppa Rosaria Leonardi, Greta La Quatra, Giorgio Gusella, Dalia Aiello, Alessandro Vitale, Boris Xavier Camiletti and Giancarlo Polizzi
Agronomy 2024, 14(9), 2116; https://doi.org/10.3390/agronomy14092116 (registering DOI) - 17 Sep 2024
Abstract
Alternaria brown spot (ABS), caused by Alternaria alternata, is one of the main citrus diseases that causes heavy production losses and reductions in fruit quality worldwide. The application of chemical fungicides has a key role in the management of ABS. In this [...] Read more.
Alternaria brown spot (ABS), caused by Alternaria alternata, is one of the main citrus diseases that causes heavy production losses and reductions in fruit quality worldwide. The application of chemical fungicides has a key role in the management of ABS. In this study, 48 isolates of A. alternata collected from citrus orchards since 2014 were tested in vitro for their sensitivity to pyraclostrobin and fludioxonil, the latter being temporarily registered in Italy since 2020. Pyraclostrobin sensitivity was determined using spore germination and mycelial growth assays. The effective concentration inhibiting 50% of fungal growth (EC50) was determined for each isolate. The sensitivity assays showed that the majority of A. alternata isolates tested were sensitive to pyraclostrobin. EC50 values of fludioxonil in a mycelial growth assay indicated that 100% of isolates were sensitive to this fungicide. The analysis of the cytochrome b gene showed that none of the 40 isolates with a different sensitivity profile had the G143A mutation, and the subgroup of 8 isolates analyzed by real-time PCR did not carry the G137R and F129L mutations. A subset of four more sensitive and two reduced-sensitive isolates was chosen to assess sensitivity on detached citrus leaves treated with pyraclostrobin at the maximum recommended label rate. Disease incidence and symptom severity were significantly reduced, with a small reduction reported in leaves inoculated with the reduced-sensitive isolates. Furthermore, there was no correlation between sensitivity and fitness parameters evaluated in vitro (mycelium growth and sporulation rate). These findings help the development of monitoring resistance programs and, consequently, set up effective anti-resistance strategies for managing ABS on citrus orchards. Full article
(This article belongs to the Section Pest and Disease Management)
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Figure 1

Figure 1
<p>Phylogram of the best ML tree (−lnL = 2636.651053) revealed by RAxML from an analysis of the combined ITS–<span class="html-italic">gapdh</span>-<span class="html-italic">tef</span> matrix of <span class="html-italic">Alternaria</span>, showing the phylogenetic position of the fourteen <span class="html-italic">Alternaria alternata</span> isolates formerly named as AR and MN (bold), with <span class="html-italic">A. alternantherae</span> selected as outgroup to root the tree. Maximum likelihood (ML) and maximum parsimony (MP) bootstrap support above 60% are given at the first and second position, respectively, above the branches.</p>
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<p>Bar diagrams showing colony diameters of <span class="html-italic">Alternaria alternata</span> isolates cultured on PDA amended with pyraclostrobin at different doses (0, 0.5, 1, and 10 ppm). Diameters derive from the mean of three replicates. Error bars represent standard deviation.</p>
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<p>Mycelial growth reduction of two <span class="html-italic">Alternaria alternata</span> isolates grown on PDA plates amended with pyraclostrobin at different concentrations. (<b>A</b>) 0 μg mL<sup>−1</sup>; (<b>B</b>) 10 μg mL<sup>−1</sup>; (<b>C</b>) 1 μg mL<sup>−1</sup>; (<b>D</b>) 0.5 μg mL<sup>−1</sup>. From left to right, a reduced-sensitive isolate (AR10) and a sensitive isolate (AA43).</p>
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<p>Bar diagrams showing the colony diameters of <span class="html-italic">Alternaria alternata</span> isolates cultured on PDA amended with fludioxonil at different doses (0, 0.01, 0.1, 1, and 10 ppm). Diameters derive from the mean of three replicates. Error bars represent standard deviation.</p>
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<p>In vitro sensitivity of three <span class="html-italic">Alternaria alternata</span> isolates (AA144, AA90, and AA103) to fludioxonil at different fungicide concentrations: (<b>A</b>) 0 μg mL<sup>−1</sup>; (<b>B</b>) 10 μg mL<sup>−1</sup>; (<b>C</b>) 1 μg mL<sup>−1</sup>; (<b>D</b>) 0.1 μg mL<sup>−1</sup>; (<b>E</b>) 0.01 μg mL<sup>−1</sup>.</p>
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<p>Comparison between detached citrus leaves treated with pyraclostrobin and inoculated with highly sensitive (AA1) and reduced sensitive (AA27) isolates of <span class="html-italic">Alternaria alternata</span>. Untreated leaves were displayed in the upper section of each panel, while treated leaves are shown in the lower section.</p>
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8 pages, 422 KiB  
Article
Iron Supply of Multivitamins–Multiminerals Commercialized Online by Amazon in Western and Southern Europe: A Labeling Analysis
by Margherita G. M. Mattavelli, Giacomo Piccininni, Gabriel F. Toti, Mario G. Bianchetti, Luca Gabutti, Sebastiano A. G. Lava, Carlo Agostoni, Pietro B. Faré and Gregorio P. Milani
Nutrients 2024, 16(18), 3140; https://doi.org/10.3390/nu16183140 (registering DOI) - 17 Sep 2024
Abstract
Background. In high-income countries, shopping for non-prescription multivitamin–multimineral supplements has tremendously increased. Objective and Methods. The purpose of this labeling analysis is to inform on the daily elemental iron (with or without vitamin C) supply provided by multivitamin–multimineral supplements sold online by Amazon [...] Read more.
Background. In high-income countries, shopping for non-prescription multivitamin–multimineral supplements has tremendously increased. Objective and Methods. The purpose of this labeling analysis is to inform on the daily elemental iron (with or without vitamin C) supply provided by multivitamin–multimineral supplements sold online by Amazon in Western and Southern Europe (amazon.es®, amazon.de®, amazon.it®, and amazon.fr®). Results. We identified 298 iron-containing multivitamin–multimineral preparations sold by Amazon marketplaces: 153 preparations sourced from amazon.de®, 68 from amazon.fr®, 54 from amazon.it®, and 23 from amazon.es®. The daily iron dose provided by these preparations was 14 [5–14] mg (median and interquartile range), with no differences among the marketplaces. Approximately 90% (n = 265) of the preparations contained ferrous iron. Moreover, 85% (n = 253) of the preparations were fortified with vitamin C in a dose of 80 [40–100] mg daily. Conclusions. The median supply of iron (about 14 mg) and vitamin C (80 mg) in iron-containing multivitamin–multimineral preparations offered on Amazon platforms in Western and Southern Europe falls below that currently recommended for iron deficiency in review articles, namely 100 mg of iron and 500 mg of vitamin C per day. The iron supply of iron-containing multivitamin–multimineral preparations falls also below the dose of 30–60 mg advocated to prevent iron deficiency in menstruating women. Full article
(This article belongs to the Section Micronutrients and Human Health)
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<p>Daily iron supply provided by 298 iron-containing multivitamin–multimineral preparations sold by amazon.de<sup>®</sup>, amazon.fr<sup>®</sup>, amazon.it<sup>®</sup>, and amazon.es<sup>®</sup>. The preparations are subdivided into three different groups according to the suggested daily dose of iron, namely 2–9 mg, 10–19 mg, and 20–50 mg daily. Ferrous (Fe<sup>2+</sup>) iron- and ferric (Fe<sup>3+</sup>) iron-containing preparations are presented separately.</p>
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17 pages, 3724 KiB  
Article
YOLOv8-Based Drone Detection: Performance Analysis and Optimization
by Betul Yilmaz and Ugurhan Kutbay
Computers 2024, 13(9), 234; https://doi.org/10.3390/computers13090234 (registering DOI) - 17 Sep 2024
Abstract
The extensive utilization of drones has led to numerous scenarios that encompass both advantageous and perilous outcomes. By using deep learning techniques, this study aimed to reduce the dangerous effects of drone use through early detection of drones. The purpose of this study [...] Read more.
The extensive utilization of drones has led to numerous scenarios that encompass both advantageous and perilous outcomes. By using deep learning techniques, this study aimed to reduce the dangerous effects of drone use through early detection of drones. The purpose of this study is the evaluation of deep learning approaches such as pre-trained YOLOv8 drone detection for security issues. This study focuses on the YOLOv8 model to achieve optimal performance in object detection tasks using a publicly available dataset collected by Mehdi Özel for a UAV competition that is sourced from GitHub. These images are labeled using Roboflow, and the model is trained on Google Colab. YOLOv8, known for its advanced architecture, was selected due to its suitability for real-time detection applications and its ability to process complex visual data. Hyperparameter tuning and data augmentation techniques were applied to maximize the performance of the model. Basic hyperparameters such as learning rate, batch size, and optimization settings were optimized through iterative experiments to provide the best performance. In addition to hyperparameter tuning, various data augmentation strategies were used to increase the robustness and generalization ability of the model. Techniques such as rotation, scaling, flipping, and color adjustments were applied to the dataset to simulate different conditions and variations. Among the augmentation techniques applied to the specific dataset in this study, rotation was found to deliver the highest performance. Blurring and cropping methods were observed to follow closely behind. The combination of optimized hyperparameters and strategic data augmentation allowed YOLOv8 to achieve high detection accuracy and reliable performance on the publicly available dataset. This method demonstrates the effectiveness of YOLOv8 in real-world scenarios, while also highlighting the importance of hyperparameter tuning and data augmentation in increasing model capabilities. To enhance model performance, dataset augmentation techniques including rotation and blurring are implemented. Following these steps, a significant precision value of 0.946, a notable recall value of 0.9605, and a considerable precision–recall curve value of 0.978 are achieved, surpassing many popular models such as Mask CNN, CNN, and YOLOv5. Full article
(This article belongs to the Special Issue Machine Learning Applications in Pattern Recognition)
14 pages, 1648 KiB  
Article
Bidentate Substrate Binding Mode in Oxalate Decarboxylase
by Alvaro Montoya, Megan Wisniewski, Justin L. Goodsell and Alexander Angerhofer
Molecules 2024, 29(18), 4414; https://doi.org/10.3390/molecules29184414 (registering DOI) - 17 Sep 2024
Abstract
Oxalate decarboxylase is an Mn- and O2-dependent enzyme in the bicupin superfamily that catalyzes the redox-neutral disproportionation of the oxalate monoanion to form carbon dioxide and formate. Its best-studied isozyme is from Bacillus subtilis where it is stress-induced under low pH [...] Read more.
Oxalate decarboxylase is an Mn- and O2-dependent enzyme in the bicupin superfamily that catalyzes the redox-neutral disproportionation of the oxalate monoanion to form carbon dioxide and formate. Its best-studied isozyme is from Bacillus subtilis where it is stress-induced under low pH conditions. Current mechanistic schemes assume a monodentate binding mode of the substrate to the N-terminal active site Mn ion to make space for a presumed O2 molecule, despite the fact that oxalate generally prefers to bind bidentate to Mn. We report on X-band 13C-electron nuclear double resonance (ENDOR) experiments on 13C-labeled oxalate bound to the active-site Mn(II) in wild-type oxalate decarboxylase at high pH, the catalytically impaired W96F mutant enzyme at low pH, and Mn(II) in aqueous solution. The ENDOR spectra of these samples are practically identical, which shows that the substrate binds bidentate (κO, κO’) to the active site Mn(II) ion. Domain-based local pair natural orbital coupled cluster singles and doubles (DLPNO-CCSD) calculations of the expected 13C hyperfine coupling constants for bidentate bound oxalate predict ENDOR spectra in good agreement with the experiment, supporting bidentate bound substrate. Geometry optimization of a substrate-bound minimal active site model by density functional theory shows two possible substrate coordination geometries, bidentate and monodentate. The bidentate structure is energetically preferred by ~4.7 kcal/mol. Our results revise a long-standing hypothesis regarding substrate binding in the enzyme and suggest that dioxygen does not bind to the active site Mn ion after substrate binds. The results are in agreement with our recent mechanistic hypothesis of substrate activation via a long-range electron transfer process involving the C-terminal Mn ion. Full article
(This article belongs to the Section Chemical Biology)
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<p>X-band <sup>13</sup>C Mims ENDOR spectra. Experimental parameters: Microwave (MW) frequency = 9.746 GHz, MW pulse length (π/2) = 16 ns, τ = 540 ns, 521 points per spectrum. Radio frequency (RF) pulse width, <span class="html-italic">T</span> = 20 µs representing a π-pulse. The sample temperature was 5 K in all cases. (<b>A</b>) WT OxDC in Tris buffer pH 8.5 (blue), OxDC mutant W96F in citrate buffer pH 5.0 (red), and 1 mM MnCl<sub>2</sub> aqueous solution (green). All samples contained 50 mM <sup>13</sup>C-oxalate, and 50% glycerol as a glassing agent. The protein samples also contained 10 mM ascorbate and 5 μM DTPA. (<b>B</b>) X-band <sup>13</sup>C Mims ENDOR spectra of 1 mM MnCl<sub>2</sub> in 50:50 water/glycerol mixture with 50 mM <sup>13</sup>C-oxalate, showing the loss of the <sup>13</sup>C-ENDOR signal with increasing DTPA concentration. The molar ratio of DTPA:Mn(II) is given in the box, i.e., the DTPA concentrations are: (black) no DTPA, (red) 50 µM, (green) 100 µM, (cyan) 200 µM, (magenta) 400 µM, and (violet) 1000 µM.</p>
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<p>Results of geometry optimization of the substrate bound to the active site N-terminal Mn(II) ion. (<b>A</b>) Bidentate binding conformation. (<b>B</b>) Monodentate binding conformation. Distances between C and Mn, as well as coordinating O and Mn, are indicated by dashed lines and given in units of Ångstrom. Atom colors follow a modified CPK scheme where carbon atoms appear in cyan.</p>
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<p>Simulations of the <sup>13</sup>C ENDOR spectra using a bidentate (<b>A</b>) and a monodentate (<b>B</b>) model for substrate binding to Mn(II). Green: Experimental ENDOR spectrum. Pink and orange: individual contributions of C<sub>1</sub> and C<sub>2</sub> (<b>A</b>) or C<sub>3</sub> and C<sub>4</sub> (<b>B</b>) to the simulated ENDOR spectrum. Blue: sum of the individual contributions from the two carbon atoms. <a href="#app1-molecules-29-04414" class="html-app">Supporting information, Figure S3c</a>, shows the structure on which the calculations were based and the carbon numbering scheme.</p>
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21 pages, 2794 KiB  
Article
Variations in Canine Behavioural Characteristics across Conventional Breed Clusters and Most Common Breed-Based Public Stereotypes
by Barbara Peťková, Lenka Skurková, Martin Florian, Monika Slivková, Zuzana Dudra Kasičová and Jana Kottferová
Animals 2024, 14(18), 2695; https://doi.org/10.3390/ani14182695 (registering DOI) - 17 Sep 2024
Viewed by 70
Abstract
Dog breeds are grouped based on scientific agreement, whether for traditional reasons or specific tasks during their domestication. Discrepancies may occur between public views of breed behaviour and actual evidence. This research aims to investigate differences in five behavioural traits (aggression towards people, [...] Read more.
Dog breeds are grouped based on scientific agreement, whether for traditional reasons or specific tasks during their domestication. Discrepancies may occur between public views of breed behaviour and actual evidence. This research aims to investigate differences in five behavioural traits (aggression towards people, aggression towards animals, fearfulness, responsiveness to training, and activity/excitability) by using the Dog Personality Questionnaire (DPQ) across six conventional groups/clusters of dog breeds (herding, hunting, guarding, companion dogs, potentially aggressive breeds, and mixed-breed dogs) and to assess hypotheses derived from common public presumptions. A cohort of 1309 dog owners sourced through diverse online platforms took part in the study. Contrary to stereotypes, the findings indicate that breeds labelled as “potentially aggressive” display lower levels of aggression compared to guarding breeds (χ2 (5) = 3.657, p = 0.041) and mixed-breeds (χ2 (5) = 3.870, p = 0.002). Additionally, mixed-breed dogs exhibited the highest levels of fearfulness among the six conventional clusters. In terms of aggression and gender, males demonstrated higher aggression levels towards both humans and animals compared to females (p = 0.001). These results challenge established assumptions and emphasise the necessity of evidence-based methodologies in the assessment of canine behaviour. Full article
(This article belongs to the Special Issue The Complexity of the Human–Companion Animal Bond)
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Figure 1
<p>Pairwise comparison for various categories of dog breeds of aggression towards people. Regarding the potentially aggressive dogs, statistically significant results (yellow lines) showed they are less aggressive towards people than the category of guarding (<span class="html-italic">p</span> = 0.004) or mix-breeds (<span class="html-italic">p</span> = 0.002). No statistically significant differences between categories of dog breeds are represented by black lines.</p>
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<p>Pairwise comparison for various categories of dog breeds of aggression towards animals. Statistically significant differences between categories of dog breeds are represented by yellow lines, where the potentially aggressive dog breeds were more aggressive towards the animals than herding dogs (<span class="html-italic">p</span> = 0.001). No statistically significant differences between categories of dog breeds are represented by black lines.</p>
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<p>Statistical analysis showed that there was a statistically significant difference in aggression towards animals score between the potentially aggressive breeds and herding breeds, χ<sup>2</sup>(5) = 4.622, <span class="html-italic">p</span> = 0.001.</p>
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<p>Pair-wise comparison of <span class="html-italic">fearfulness</span> in different breed categories. Statistically significant results (yellow lines) showed that mix breeds are more fearful than potentially aggressive breeds (<span class="html-italic">p</span> = 0.001), hound breeds (<span class="html-italic">p</span> = 0.001), companion breeds (<span class="html-italic">p</span> = 0.006), guarding breeds (<span class="html-italic">p</span> = 0.001), and herding breeds (<span class="html-italic">p</span> = 0.001). No statistically significant differences between categories of dog breeds are represented by black lines.</p>
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<p>Independent-Samples Kruskal–Wallis Test for fearfulness in various categories of dog breeds.</p>
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<p>Independent-Samples Kruskal–Wallis Test for <span class="html-italic">responsiveness to training</span> in various categories of dog breeds.</p>
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<p>Independent-samples Mann–Whitney U test (<span class="html-italic">p</span>-value 0.05, significance level): Comparison of the aggressiveness towards people in dog males and females–frequency histogram quantifying the frequency of observations from one group ranking higher than those from another (comparison of distributions).</p>
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<p>Independent-samples Mann–Whitney U test (<span class="html-italic">p</span>-value 0.05, significance level): Comparison of the aggressiveness towards animals in dog males and females–frequency histogram quantifying the frequency of observations from one group ranking higher than those from another (comparison of distributions).</p>
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20 pages, 2847 KiB  
Article
Towards Discriminative Class-Aware Domain Alignment via Coding Rate Reduction for Unsupervised Adversarial Domain Adaptation
by Jiahua Wu and Yuchun Fang
Symmetry 2024, 16(9), 1216; https://doi.org/10.3390/sym16091216 - 16 Sep 2024
Viewed by 225
Abstract
Unsupervised domain adaptation (UDA) methods, based on adversarial learning, employ the means of implicit global and class-aware domain alignment to learn the symmetry between source and target domains and facilitate the transfer of knowledge from a labeled source domain to an unlabeled target [...] Read more.
Unsupervised domain adaptation (UDA) methods, based on adversarial learning, employ the means of implicit global and class-aware domain alignment to learn the symmetry between source and target domains and facilitate the transfer of knowledge from a labeled source domain to an unlabeled target domain. However, these methods still face misalignment and poor target generalization due to small inter-class domain discrepancy and large intra-class discrepancy of target features. To tackle these challenges, we introduce a novel adversarial learning-based UDA framework named Coding Rate Reduction Adversarial Domain Adaptation (CR2ADA) to better learn the symmetry between source and target domains. Integrating conditional domain adversarial networks with domain-specific batch normalization, CR2ADA learns robust domain-invariant features to implement global domain alignment. For discriminative class-aware domain alignment, we propose the global and local coding rate reduction methods in CR2ADA to maximize inter-class domain discrepancy and minimize intra-class discrepancy of target features. Additionally, CR2ADA combines minimum class confusion and mutual information to further regularize the diversity and discriminability of the learned features. The effectiveness of CR2ADA is demonstrated through experiments on four UDA datasets. The code can be obtained through email or GitHub. Full article
33 pages, 4196 KiB  
Review
Radiobiological Applications of Vibrational Spectroscopy: A Review of Analyses of Ionising Radiation Effects in Biology and Medicine
by Jade F. Monaghan, Hugh J. Byrne, Fiona M. Lyng and Aidan D. Meade
Radiation 2024, 4(3), 276-308; https://doi.org/10.3390/radiation4030022 (registering DOI) - 16 Sep 2024
Viewed by 195
Abstract
Vibrational spectroscopic techniques, such as Fourier transform infrared (FTIR) absorption and Raman spectroscopy (RS), offer unique and detailed biochemical fingerprints by detecting specific molecular vibrations within samples. These techniques provide profound insights into the molecular alterations induced by ionising radiation, which are both [...] Read more.
Vibrational spectroscopic techniques, such as Fourier transform infrared (FTIR) absorption and Raman spectroscopy (RS), offer unique and detailed biochemical fingerprints by detecting specific molecular vibrations within samples. These techniques provide profound insights into the molecular alterations induced by ionising radiation, which are both complex and multifaceted. This paper reviews the application of rapid and label-free vibrational spectroscopic methods for assessing biological radiation responses. These assessments span from early compartmentalised models such as DNA, lipid membranes, and vesicles to comprehensive evaluations in various living biological models, including tissues, cells, and organisms of diverse origins. The review also discusses future perspectives, highlighting how the field is overcoming methodological limitations. RS and FTIR have demonstrated significant potential in detecting radiation-induced biomolecular alternations, which may facilitate the identification of radiation exposure spectral biomarkers/profiles. Full article
(This article belongs to the Special Issue Vibrational Spectroscopy in Radiobiology)
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Figure 1
<p>Basic principles of vibrational spectroscopy. (<b>A</b>) Interactions of incident light with a biological sample resulting in scattering (Mie, Raman (photons gain or lose energy), and Rayleigh (no change in photon energy)), reflection, absorption, and transmission of photons. (<b>B</b>) Graphical representation of stretching and bending vibrational modes of biomolecules due to interaction with the incident beam. (<b>C</b>) Energy-level diagram of IR (absorption, transmission and reflectance) and Raman scattering processes: Hν<sub>0</sub> = incident laser energy, hν<sub>ve</sub> = vibrational energy, ν<sub>ve</sub> = vibrational frequencies and Δν= Raman shift (energy difference between the incident beam and scattered photons; expressed as wavenumbers). At room temperature, the majority of molecules are in the S0 state. Thus, a larger proportion of molecules will exhibit Stokes Raman scattering. Typical Raman (<b>D</b>) and FTIR (<b>E</b>) spectra of a cell, where ν = stretching vibrations, δ = bending vibrations, s = symmetric vibrations, as = asymmetric vibrations, phe = phenylalanine, tyr = tyrosine and trp = tryptophan.</p>
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<p>Schematic diagrams of the experimental set of a Raman (<b>A</b>) and FTIR (<b>B</b>) spectrometer.</p>
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<p>Example of a pre-processing workflow for cell and plasma Raman spectra and cell FTIR spectra.</p>
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<p>Effect of X-ray irradiation (2.3 Gy) on EBV+ and EBV- NPC cells. Comparison of mean LTs-RS spectra from (<b>A</b>) control group and radiated groups of CNE2 cells, (<b>B</b>) control group and radiated group of C666-1 cells [<a href="#B131-radiation-04-00022" class="html-bibr">131</a>]. The shaded areas (grey) indicate the standard deviations of means. The difference spectrum (2.3 Gy minus control) is shown at the bottom (black lines). Post-irradiation, radiosensitive CNE2 cells exhibited statistically significant DNA alterations, evidenced by changes in nucleic acid-related spectral bands (752, 1264, 1335 cm<sup>−1</sup>), amide I and II (1264 cm<sup>−1</sup> and 1655 cm<sup>−1</sup>), and lipid bands (1065, 1297, and 1655 cm<sup>−1</sup>).</p>
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<p>PCA of UVW Raman spectra 24 h post-irradiation. (<b>A</b>) Box plots of PC5 scores and irradiation dose and (<b>B</b>) PC loadings for PC5. Box plot compares control cells and 6 Gy irradiated cells for unsynchronised UVW cells and synchronised UVW cells [<a href="#B133-radiation-04-00022" class="html-bibr">133</a>]. Statistical analysis was performed using a two-way ANOVA with Wilcoxon rank sum test at 99% confidence interval (<span class="html-italic">p</span> &gt; 0.05 = ns (not significant) band, <span class="html-italic">p</span> &lt; 0.0001 = ****). Data points are represented as ⬡.</p>
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<p>RS of H460 NSCLC cells and xenograft models detects radiation-induced glycogen accumulation. (<b>Ai</b>) Raman spectra of an irradiated (10 Gy) and unirradiated H460 cell (0 Gy) at 3 days post-irradiation demonstrating Raman spectroscopic detection of increased intracellular glycogen. The Raman spectrum of glycogen is shown for comparison with the difference spectrum and PC1 loading plot. (<b>Aii</b>) The mean PCA scores of H460 cell spectra for the first PCA component indicate statistically significant (<span class="html-italic">p</span> &lt; 0.05 by unpaired two-tailed <span class="html-italic">t</span>-test) increases in intracellular glycogen over time relative to same day unirradiated cells [<a href="#B149-radiation-04-00022" class="html-bibr">149</a>]. (<b>Bi</b>) The black line represents PC 1 from PCA of H460 xenograft spectra in a single dose group (0 and 15 Gy) and time point (2 h and 1, 3, and 10 days post-irradiation). The dashed red trace represents the Raman spectrum of pure glycogen and (<b>Bii</b>) corresponding box plots of median PC1 scores [<a href="#B166-radiation-04-00022" class="html-bibr">166</a>]. Statistical analysis was performed using a two-sided Wilcoxon rank sum test to a 5% significance level. Statistical significance: **** <span class="html-italic">p</span> ≤ 0.0001.</p>
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<p>Mean and difference in Raman spectra of unirradiated lymphocytes from grade 0 to 1 (G0) and grade 2+ (G2+) high-risk prostate cancer patients; (<b>A</b>) The shaded region around each mean spectrum indicates the SE on the mean for each class. (<b>B</b>) Difference spectrum with grey shading represents regions of the spectrum that were found to be significantly different using a two-tailed <span class="html-italic">t</span>-test (<span class="html-italic">p</span> &lt; 0.05). Phe = phenylalanine, C = carbohydrates, L = lipids, N = nucleic acids and P = proteins (amide I) [<a href="#B76-radiation-04-00022" class="html-bibr">76</a>].</p>
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<p>Raman and LDA analysis of a hematoxylin and eosin stained tissue biopsy from poor and good responding colorectal cancer patients to preoperative radiotherapy. (<b>A</b>) Example of a tissue section from colorectal cancer patients annotated for subsequent Raman analysis. (<b>B</b>) Histogram of the LDA scores [<a href="#B88-radiation-04-00022" class="html-bibr">88</a>].</p>
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<p>Examples of recent advancements in vibrational spectroscopy within biomedical and diagnostic contexts. (<b>A</b>) OCTAVSS graphical toolbox pre-processing flowchart for vibrational spectroscopy imaging data [<a href="#B66-radiation-04-00022" class="html-bibr">66</a>]. (<b>B</b>) Needle core biopsy integrated with a Raman spectrometer. Biopsy window magnified for clarity [<a href="#B288-radiation-04-00022" class="html-bibr">288</a>]. (<b>C</b>) Portable ATR–FTIR spectrometer integrated with cloud-based analytics for malaria diagnosis under tropical field conditions [<a href="#B279-radiation-04-00022" class="html-bibr">279</a>].</p>
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21 pages, 2822 KiB  
Article
Genetic Algorithm-Based Data-Driven Process Selection System for Additive Manufacturing in Industry 4.0
by Bader Alwomi Aljabali, Joseph Shelton and Salil Desai
Materials 2024, 17(18), 4544; https://doi.org/10.3390/ma17184544 - 16 Sep 2024
Viewed by 261
Abstract
Additive manufacturing (AM) has impacted the manufacturing of complex three-dimensional objects in multiple materials for a wide array of applications. However, additive manufacturing, as an upcoming field, lacks automated and specific design rules for different AM processes. Moreover, the selection of specific AM [...] Read more.
Additive manufacturing (AM) has impacted the manufacturing of complex three-dimensional objects in multiple materials for a wide array of applications. However, additive manufacturing, as an upcoming field, lacks automated and specific design rules for different AM processes. Moreover, the selection of specific AM processes for different geometries requires expert knowledge, which is difficult to replicate. An automated and data-driven system is needed that can capture the AM expert knowledge base and apply it to 3D-printed parts to avoid manufacturability issues. This research aims to develop a data-driven system for AM process selection within the design for additive manufacturing (DFAM) framework for Industry 4.0. A Genetic and Evolutionary Feature Weighting technique was optimized using 3D CAD data as an input to identify the optimal AM technique based on several requirements and constraints. A two-stage model was developed wherein the stage 1 model displayed average accuracies of 70% and the stage 2 model showed higher average accuracies of up to 97.33% based on quantitative feature labeling and augmentation of the datasets. The steady-state genetic algorithm (SSGA) was determined to be the most effective algorithm after benchmarking against estimation of distribution algorithm (EDA) and particle swarm optimization (PSO) algorithms, respectively. The output of this system leads to the identification of optimal AM processes for manufacturing 3D objects. This paper presents an automated design for an additive manufacturing system that is accurate and can be extended to other 3D-printing processes. Full article
(This article belongs to the Section Manufacturing Processes and Systems)
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<p>Framework for a data-driven process selection system for additive manufacturing.</p>
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<p>Flowchart for a data-driven process selection system for additive manufacturing.</p>
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<p>Sample parts with different topologies as inputs for the GA algorithm.</p>
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<p>(<b>a</b>) Dimensional, volumetric, and surface area data being extracted from part design and (<b>b</b>) minimum part thickness evaluated based on quantifying the variation in thickness for the part geometry.</p>
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<p>(<b>a</b>) Cumulative match characteristic (CMC) curves and (<b>b</b>) receiver operator characteristic (ROC) for stage 1 (100 dataset).</p>
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<p>Comparative statistical analysis of algorithms for additive manufacturing process selection.</p>
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<p>(<b>a</b>) Cumulative match characteristic (CMC) curves and (<b>b</b>) receiver operator characteristic (ROC) for stage 2 (300 dataset).</p>
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15 pages, 7669 KiB  
Article
Advanced Multi-Label Fire Scene Image Classification via BiFormer, Domain-Adversarial Network and GCN
by Yu Bai, Dan Wang, Qingliang Li, Taihui Liu and Yuheng Ji
Fire 2024, 7(9), 322; https://doi.org/10.3390/fire7090322 - 15 Sep 2024
Viewed by 331
Abstract
Detecting wildfires presents significant challenges due to the presence of various potential targets in fire imagery, such as smoke, vehicles, and people. To address these challenges, we propose a novel multi-label classification model based on BiFormer’s feature extraction method, which constructs sparse region-indexing [...] Read more.
Detecting wildfires presents significant challenges due to the presence of various potential targets in fire imagery, such as smoke, vehicles, and people. To address these challenges, we propose a novel multi-label classification model based on BiFormer’s feature extraction method, which constructs sparse region-indexing relations and performs feature extraction only in key regions, thereby facilitating more effective capture of flame characteristics. Additionally, we introduce a feature screening method based on a domain-adversarial neural network (DANN) to minimize misclassification by accurately determining feature domains. Furthermore, a feature discrimination method utilizing a Graph Convolutional Network (GCN) is proposed, enabling the model to capture label correlations more effectively and improve performance by constructing a label correlation matrix. This model enhances cross-domain generalization capability and improves recognition performance in fire scenarios. In the experimental phase, we developed a comprehensive dataset by integrating multiple fire-related public datasets, and conducted detailed comparison and ablation experiments. Results from the tenfold cross-validation demonstrate that the proposed model significantly improves recognition of multi-labeled images in fire scenarios. Compared with the baseline model, the mAP increased by 4.426%, CP by 4.14% and CF1 by 7.04%. Full article
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<p>Rescaled samples of fire images from CFDB.</p>
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<p>Rescaled samples of fire images from KT.</p>
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<p>Rescaled samples of fire images from VOC2012.</p>
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<p>Model framework diagram.</p>
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<p>An example of the conditional probability relationship between two labels is provided. Typically, when the image contains “flame”, there is a high likelihood that “smoke” is also present. However, if “smoke” is observed, “flame” may not necessarily be present.</p>
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<p>BiFormer Block operational flow (<span class="html-fig-inline" id="fire-07-00322-i001"><img alt="Fire 07 00322 i001" src="/fire/fire-07-00322/article_deploy/html/images/fire-07-00322-i001.png"/></span> Represents a residual connection).</p>
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<p>Domain classification and label classification network architecture.</p>
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<p>Visualization of results (where red represents a higher level of concern).</p>
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<p>Visualization of multi-label classification results (where green means the prediction is correct and red means the prediction is incorrect).</p>
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<p>Accuracy comparisons with different values of τ.</p>
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<p>Example of predicting sun.</p>
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<p>Example of predicting clouds.</p>
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<p>Example of predicting fire and smog.</p>
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22 pages, 1397 KiB  
Article
A Bis(Acridino)-Crown Ether for Recognizing Oligoamines in Spermine Biosynthesis
by Péter Kisfaludi, Sára Spátay, Marcell Krekó, Panna Vezse, Tünde Tóth, Péter Huszthy and Ádám Golcs
Molecules 2024, 29(18), 4390; https://doi.org/10.3390/molecules29184390 - 15 Sep 2024
Viewed by 283
Abstract
Oligoamines in cellular metabolism carry extremely diverse biological functions (i.e., regulating Ca2+-influx, neuronal nitric oxide synthase, membrane potential, Na+, K+-ATPase activity in synaptosomes, etc.). Furthermore, they also act as longevity agents and have a determinative role in [...] Read more.
Oligoamines in cellular metabolism carry extremely diverse biological functions (i.e., regulating Ca2+-influx, neuronal nitric oxide synthase, membrane potential, Na+, K+-ATPase activity in synaptosomes, etc.). Furthermore, they also act as longevity agents and have a determinative role in autophagy, cell growth, proliferation, and death, while oligoamines dysregulation is a key in a variety of cancers. However, many of their mechanisms of actions have just begun to be understood. In addition to the numerous biosensing methods, only a very few simple small molecule-based tests are available for their selective but reversible tracking or fluorescent labeling. Motivated by this, we present herein a new fluorescent bis(acridino)-crown ether as a sensor molecule for biogenic oligoamines. The sensor molecule can selectively distinguish oligoamines from aliphatic mono- and diamino-analogues, while showing a reversible 1:2 (host:guest) complexation with a stepwise binding process accompanied by a turn-on fluorescence response. Both computational simulations on molecular docking and regression methods on titration experiments were carried out to reveal the oligoamine-recognition properties of the sensor molecule. The new fluorescent chemosensor molecule has a high potential for molecular-level functional studies on the oligoamine systems in cell processes (cellular uptake, transport, progression in cancers, etc.). Full article
15 pages, 12772 KiB  
Article
Learning Unsupervised Cross-Domain Model for TIR Target Tracking
by Xiu Shu, Feng Huang, Zhaobing Qiu, Xinming Zhang and Di Yuan
Mathematics 2024, 12(18), 2882; https://doi.org/10.3390/math12182882 - 15 Sep 2024
Viewed by 189
Abstract
The limited availability of thermal infrared (TIR) training samples leads to suboptimal target representation by convolutional feature extraction networks, which adversely impacts the accuracy of TIR target tracking methods. To address this issue, we propose an unsupervised cross-domain model (UCDT) for TIR tracking. [...] Read more.
The limited availability of thermal infrared (TIR) training samples leads to suboptimal target representation by convolutional feature extraction networks, which adversely impacts the accuracy of TIR target tracking methods. To address this issue, we propose an unsupervised cross-domain model (UCDT) for TIR tracking. Our approach leverages labeled training samples from the RGB domain (source domain) to train a general feature extraction network. We then employ a cross-domain model to adapt this network for effective target feature extraction in the TIR domain (target domain). This cross-domain strategy addresses the challenge of limited TIR training samples effectively. Additionally, we utilize an unsupervised learning technique to generate pseudo-labels for unlabeled training samples in the source domain, which helps overcome the limitations imposed by the scarcity of annotated training data. Extensive experiments demonstrate that our UCDT tracking method outperforms existing tracking approaches on the PTB-TIR and LSOTB-TIR benchmarks. Full article
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<p>Tracking examples of our UCDT tracker and some other state-of-the-art trackers.</p>
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<p>The general TIR target tracking process under the deep correlation tracking framework. The same CNN is used to extract features from the template frame and search frame.</p>
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<p>Overview of the proposed unsupervised cross-domain model for the TIR tracking task.</p>
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<p>An example of the unsupervised pseudo-label generation for the unlabeled training sample.</p>
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<p>An example of forward-backward tracking process.</p>
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<p>Experimental comparison on PTB-TIR [<a href="#B35-mathematics-12-02882" class="html-bibr">35</a>] dataset.</p>
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<p>Success plots comparison on PTB-TIR [<a href="#B35-mathematics-12-02882" class="html-bibr">35</a>] benchmark for the background clutter, scale variation, occlusion, and out-of-view attributes.</p>
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<p>The tracking success rate vs. tracking speed comparison on the PTB-TIR [<a href="#B35-mathematics-12-02882" class="html-bibr">35</a>] benchmark.</p>
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<p>Experimental comparison on LSOTB-TIR [<a href="#B36-mathematics-12-02882" class="html-bibr">36</a>] dataset.</p>
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<p>Precision plots comparison of our UCDT and other trackers on LSOTB-TIR dataset for some different attributes.</p>
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<p>Qualitative comparison of UCDT with some other trackers (including UDT [<a href="#B60-mathematics-12-02882" class="html-bibr">60</a>], SiamMask [<a href="#B26-mathematics-12-02882" class="html-bibr">26</a>], TADT [<a href="#B40-mathematics-12-02882" class="html-bibr">40</a>], and STAMT [<a href="#B21-mathematics-12-02882" class="html-bibr">21</a>]) on several TIR tracking sequences (from top to bottom are deer-H-001, hog-H-001, street-S-002, person-S-008, person-D-019, and motobiker-V-001).</p>
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10 pages, 2065 KiB  
Article
Label-Free Quantitative Proteomics Analysis of COVID-19 Vaccines by Nano LC-HRMS
by Hengzhi Zhao, Wendong Li, Jingjing Liu, Xiao Li, Hong Ji, Mo Hu and Min Li
Vaccines 2024, 12(9), 1055; https://doi.org/10.3390/vaccines12091055 - 15 Sep 2024
Viewed by 288
Abstract
A nanoliter liquid chromatography–high resolution mass spectrometry-based method was developed for quantitative proteomics analysis of COVID-19 vaccines. It can be used for simultaneous qualitative and quantitative analysis of target proteins and host cell proteins (HCPs) in vaccine samples. This approach can directly provide [...] Read more.
A nanoliter liquid chromatography–high resolution mass spectrometry-based method was developed for quantitative proteomics analysis of COVID-19 vaccines. It can be used for simultaneous qualitative and quantitative analysis of target proteins and host cell proteins (HCPs) in vaccine samples. This approach can directly provide protein information at the molecular level. Based on this, the proteomes of 15 batches of COVID-19 inactivated vaccine samples from two companies and 12 batches of COVID-19 recombinant protein vaccine samples from one company were successfully analyzed, which provided a significant amount of valuable information. Samples produced in different batches or by different companies can be systematically contrasted in this way, offering powerful supplements for existing quality standards. This strategy paves the way for profiling proteomics in complex samples and provides a novel perspective on the quality evaluation of bio-macromolecular drugs. Full article
(This article belongs to the Special Issue SARS-CoV-2 Variants, Vaccines, and Immune Responses)
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<p>Selectivity of the method. Left column: COVID-19 structural proteins set as the target proteins. No peak belonging to COVID-19 structural proteins is seen. Right column: 6 standard proteins set as the target proteins. Peaks belonging to these 6 standard proteins are all found in spectra (the 6 colors represent the 6 standard proteins, as marked in the upper form, respectively).</p>
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<p>The MS intensity and their RSD values of 6 standard proteins in 4 vaccine samples. Black square represents the RSD value.</p>
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<p>The amount of detected S protein in each (<b>a</b>) inactivated vaccine sample and (<b>b</b>) recombinant protein vaccine sample by LC-HRMS and ELISA.</p>
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<p>Heat map shows the changes of different host cell proteins. Red stripe represents the multiple of each up-regulated host cell protein in vaccine samples (AO/AW) and blue stripe represents the multiple of each down-regulated host cell protein in vaccine samples (AW/AO).</p>
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<p>The changes of each down- or up-regulated host cell protein in two companies’ vaccine samples.</p>
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18 pages, 3598 KiB  
Article
Perception, Knowledge, and Consumption Potential of Crude and Refined Palm Oil in Brazilian Regions
by Alana Moreira Bispo, Agnes Sophia Braga Alves, Edilene Ferreira da Silva, Fernanda Doring Krumreich, Itaciara Larroza Nunes and Camila Duarte Ferreira Ribeiro
Foods 2024, 13(18), 2923; https://doi.org/10.3390/foods13182923 - 15 Sep 2024
Viewed by 336
Abstract
Crude palm oil (CPO) is the most produced vegetable oil globally, with Brazil contributing only 0.74% of global production. Pará and Bahia account for more than 82% of Brazil’s output. Despite its widespread use in the food industry after refining, there is little [...] Read more.
Crude palm oil (CPO) is the most produced vegetable oil globally, with Brazil contributing only 0.74% of global production. Pará and Bahia account for more than 82% of Brazil’s output. Despite its widespread use in the food industry after refining, there is little research on CPO consumption and perception in Brazil, particularly regarding its nutritional aspects. This study, conducted between March and July 2022, explored Brazilians’ perceptions and the potential for CPO consumption. The results show that most participants are unfamiliar with CPO but view its nutrients favorably. Less than half regularly purchase CPO. Refined palm oil (RPO) is even less known, with many unaware that refining CPO can produce carcinogenic substances. The respondents showed little concern about RPO in their foods, rarely noticing its presence on labels. Despite limited knowledge, participants understand that refining reduces CPO’s health benefits, leading to a greater preference for crude oil over refined oil. This study highlights the need for better dissemination of information about CPO in Brazil, emphasizing its nutritional benefits and the importance of adhering to daily lipid intake limits. Adding CPO at the end of cooking or consuming it raw to preserve thermosensitive compounds is also recommended. Full article
(This article belongs to the Special Issue How Does Consumers’ Perception Influence Their Food Choices?)
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<p>Correlation analysis between the most consumed type of oil, the participants’ region of residence, and their income. Note 1: SO = soybean oil, RPO = palm oil, OO = olive oil, CPO = crude palm oil, RO = canola oil, CO = corn oil, SFO = sunflower oil, SEO = sesame oil, CNO = coconut oil. Note 2: According to the exchange rate on USD 5.045 (<a href="https://economia.uol.com.br/cotacoes/cambio/" target="_blank">https://economia.uol.com.br/cotacoes/cambio/</a>, accessed on 1 March 2022), it was the equivalent to USD 240.219. Brazil’s national minimum salary in 2021 was BRL 1212.00.</p>
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<p>Respondents’ cognition about CPO (<b>A</b>) and RPO (<b>B</b>).</p>
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<p>Correspondence analysis of understanding of healthiness of CPO (<b>a</b>) and RPO (<b>b</b>) by Brazil’s region in the survey participants.</p>
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<p>Likelihood of respondents purchasing products with CPO (<b>A</b>) or RPO (<b>B</b>).</p>
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<p>Analysis of correlation between the likelihood of purchasing foods containing CPO (<b>a</b>) or RPO (<b>b</b>) and regions in Brazil, based on survey data.</p>
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