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26 pages, 1701 KiB  
Article
Time–Frequency Co-Movement of South African Asset Markets: Evidence from an MGARCH-ADCC Wavelet Analysis
by Fabian Moodley, Sune Ferreira-Schenk and Kago Matlhaku
J. Risk Financial Manag. 2024, 17(10), 471; https://doi.org/10.3390/jrfm17100471 (registering DOI) - 18 Oct 2024
Abstract
The growing prominence of generating a well-diversified portfolio by holding securities from multi-asset markets has, over the years, drawn criticism. Various financial market events have caused asset markets to co-move, especially in emerging markets, which reduces portfolio diversification and enhances return losses. Consequently, [...] Read more.
The growing prominence of generating a well-diversified portfolio by holding securities from multi-asset markets has, over the years, drawn criticism. Various financial market events have caused asset markets to co-move, especially in emerging markets, which reduces portfolio diversification and enhances return losses. Consequently, this study examines the time–frequency co-movement of multi-asset classes in South Africa by using the Multivariate Generalized Autoregressive Conditional Heteroscedastic–Asymmetrical Dynamic Conditional Correlation (MGARCH-DCC) model, Maximal Overlap Discrete Wavelet Transformation (MODWT), and the Continuous Wavelet Transform (WTC) for the period 2007 to 2024. The findings demonstrate that the equity–bond, equity–property, equity–gold, bond–property, bond–gold, and property–gold markets depict asymmetrical time-varying correlations. Moreover, correlation in these asset pairs varies at investment periods (short-term, medium-term, and long-term), with historical events such as the 2007/2008 Global Financial Crisis (GFC) and the COVID-19 pandemic causing these asset pairs to co-move at different investment periods, which reduces diversification properties. The findings suggest that South African multi-asset markets co-move, affecting the diversification properties of holding multi-asset classes in a portfolio at different investment periods. Consequently, investors should consider the holding periods of each asset market pair in a portfolio as they dictate the level of portfolio diversification. Investors should also remember that there are lead–lag relationships and risk transmission between asset market pairs, enhancing portfolio volatility. This study assists investors in making more informed investment decisions and identifying optimal entry or exit points within South African multi-asset markets. Full article
(This article belongs to the Special Issue Portfolio Selection and Risk Analytics)
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<p>Returns of South African multi-asset market proxies. Source: The authors’ own estimation (2024).</p>
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<p>MODWT-based correlations of South African multi-asset markets at different investment periods. 1. The green, black and red lines represent the higher bound correlations, standard correlations and lower bound correlations, respectively. 2. * indicates the investment periods. 3. Source: Authors’ own estimation (2024).</p>
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<p>South African multi-asset markets’ WTC. Notes: Source: Authors’ own estimation (2024).</p>
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<p>South African multi-asset markets’ WTC. Notes: Source: Authors’ own estimation (2024).</p>
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36 pages, 1732 KiB  
Article
Choosing Recovery Strategies for Waste Electronics: How Product Modularity Influences Cooperation and Competition
by Xuxin Lai, Nengmin Wang, Bin Jiang and Tao Jia
Sustainability 2024, 16(20), 9035; https://doi.org/10.3390/su16209035 (registering DOI) - 18 Oct 2024
Abstract
Modular design facilitates easy disassembly and reduces the manufacturer’s remanufacturing costs. However, the simplicity and modular structure of products can intensify competition between manufacturers and third-party recyclers. To improve recovery efficiency, this study examines the impact of modular design on the manufacturer’s selection [...] Read more.
Modular design facilitates easy disassembly and reduces the manufacturer’s remanufacturing costs. However, the simplicity and modular structure of products can intensify competition between manufacturers and third-party recyclers. To improve recovery efficiency, this study examines the impact of modular design on the manufacturer’s selection of recovery strategies, including centralized, cooperation, and competition strategies. We examine the optimal recovery strategy for achieving both economic goals, such as supply chain profit, and environmental goals, such as collection quantity. Our results indicate that the manufacturer should adopt cooperation recovery and invest in higher modularity when faced with strong competition from third-party recyclers. Conversely, when the competitiveness of third-party recovery is relatively low, a competition recovery strategy is more advantageous. Contrary to conventional wisdom, which suggests limiting product disassembly to reduce third-party recovery competitiveness, our results indicate that manufacturers should invest in higher modularity and avoid engaging in price wars to prevent third-party entry. Moreover, competition recovery leads to a higher collection quantity, while cooperation recovery is preferred in terms of supply chain profit. This study provides theoretical guidance for manufacturers in selecting optimal recovery strategies and offers recommendations for governments on regulating product disassembly effectively. Full article
(This article belongs to the Section Waste and Recycling)
18 pages, 3767 KiB  
Article
Exploring Soil–Water Characteristic Curves in Transitional Oil Sands Tailings
by Peter Kaheshi, G. Ward Wilson and Heather Kaminsky
Geotechnics 2024, 4(4), 1106-1123; https://doi.org/10.3390/geotechnics4040056 (registering DOI) - 18 Oct 2024
Abstract
Soil–water characteristics curves (SWCC) have proved useful in estimating parameters used in modeling unsaturated geotechnical properties of soils including permeability and strength. Either saturation, gravimetric, and instantaneous and initial volumetric water content designation can be used to develop SWCCs. Studies have shown that [...] Read more.
Soil–water characteristics curves (SWCC) have proved useful in estimating parameters used in modeling unsaturated geotechnical properties of soils including permeability and strength. Either saturation, gravimetric, and instantaneous and initial volumetric water content designation can be used to develop SWCCs. Studies have shown that any of the designations will give good estimates for soils that do not undergo volume change with suction change whereas, for soils that undergo substantial volume change, only saturation and instantaneous volumetric water content designation obtained by incorporating shrinkage curves can give correct estimates. Transition oil sands tailings have fines content that cannot be categorized as sandy or fine materials, and research on volume change with suction change in these materials is limited. In this study, HyProps, Tempe cells, and a chilled-mirror water potential meter were used to measure suction and corresponding water contents for samples that were prepared by mixing coarse sand and Fluid Tailing by ratios that mimic transition zone tailings. Shrinkage tests were also performed to observe the extent of volume change with suction increase. Air Entry Values (AEV) estimated from SWCCs based on gravimetric water content were found to be lower than those estimated from saturation-based SWCCs due to substantial volume changes in these materials with suction increase. The use of saturation water content designation is recommended in estimating AEV for transitional oil sands tailings. This is useful information in predicting the long term unsaturated geotechnical behavior of these materials for environmental management and safety purposes. Full article
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<p>Tailings Phase Diagram.</p>
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<p>Equipment used to obtain SWCC data: (<b>a</b>) HyProp; (<b>b</b>) Tempe cell; and (<b>c</b>) Water potential meter (WP4-T).</p>
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<p>Samples after Shrinkage test.</p>
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<p>Particle size distribution data for the sample used in the study.</p>
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<p>Shrinkage curves.</p>
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<p>Combined saturation-based (s-SWCC) and gravimetric water content-based (w-SWCC) soil water characteristics curves for tested samples.</p>
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<p>Normalized volume changes upon drying.</p>
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<p>Fines and clay contents influence AEV.</p>
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<p>Fines content influence on AEV for transitional oil sands tailings.</p>
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<p>Volume change influence on AEV for transitional oil sands tailings.</p>
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15 pages, 1925 KiB  
Article
Evaluation of the Feasibility and Utilizability of Pretreated Sewage Sludge in Cement Kiln Co-Processing
by Wei Cheng, Xiaohu Lin, Wei Liu, Haihua Cao and Jingcheng Xu
Sustainability 2024, 16(20), 9025; https://doi.org/10.3390/su16209025 - 18 Oct 2024
Abstract
The treatment and resource utilization of sludge from municipal sewage treatment plants is an important environmental issue. Cement kiln co-processing offers a promising solution, but challenges remain, particularly regarding sludge properties and feasibility in kiln systems. This study analyzes the characteristics of three [...] Read more.
The treatment and resource utilization of sludge from municipal sewage treatment plants is an important environmental issue. Cement kiln co-processing offers a promising solution, but challenges remain, particularly regarding sludge properties and feasibility in kiln systems. This study analyzes the characteristics of three pretreated sludges: mechanically dewatered sludge, deeply dewatered sludge, and lime-dried sludge. Using techniques such as thermogravimetric analysis (TGA) and X-ray diffraction (XRD), this study investigates their calorific values and raw material utilizability in co-processing. As the sludge moisture content decreases from interstitial to bound water, energy consumption per ton of evaporated water rises, particularly below 30%. At 10 °C/min heating, energy consumption for mechanically dewatered sludge at 80%, 30%, and 10% moisture was 3573, 8220, and 34,751 kJ/kg, respectively; for deeply dewatered sludge at 60%, 30%, and 10%, the values were 4398, 7550, and 11,504 kJ/kg. Keeping moisture content above 30% before kiln entry reduces energy use and enhances calorific value. Sludge utilizability as a raw material depends on its pretreatment. The ash composition of deeply and mechanically dewatered sludge resembles iron-rich raw materials, while lime-dried sludge aligns more with limestone. The utilizable ash content was 23.3%, 8.1%, and 46.3%, respectively, with lime-dried sludge showing the highest potential. This study provides insights into sludge properties and their co-processing potential in cement kilns, offering scientific and technical support for practical applications. Full article
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<p>XRD Patterns of (<b>a</b>) mechanical dewatered sludge and (<b>b</b>) deeply dewatered sludge at different temperatures.</p>
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<p>(<b>a</b>) TG curve and (<b>b</b>) energy consumption for evaporation per ton of mechanical dewatered sludge during drying and (<b>c</b>) TG curve and (<b>d</b>) energy consumption for evaporation per ton of deeply dewatered sludge during drying.</p>
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<p>Theoretical drying energy consumption curve for mechanical dewatered sludge and deeply dewatered sludge.</p>
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<p>Component distribution of different dewatered sludge samples.</p>
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<p>Raw material composition ratios of cement materials and three types of sludge.</p>
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34 pages, 5277 KiB  
Article
Determining the Identity of Nucleotides and the Energy of Binding of tRNAs to Their Aminoacyl-tRNA Synthetases Using a Simple Logistic Model
by Piotr H. Pawłowski and Piotr Zielenkiewicz
Life 2024, 14(10), 1328; https://doi.org/10.3390/life14101328 - 18 Oct 2024
Abstract
This study showed that the predictor in logistic regression can be applied to estimating the Gibbs free energy of tRNAs’ recognition of and binding to their aminoacyl-tRNA synthetases. Then, 24 linear logistic regression models predicting different classes of tRNAs loaded with a corresponding [...] Read more.
This study showed that the predictor in logistic regression can be applied to estimating the Gibbs free energy of tRNAs’ recognition of and binding to their aminoacyl-tRNA synthetases. Then, 24 linear logistic regression models predicting different classes of tRNAs loaded with a corresponding amino acid were trained in a machine learning classification method, reducing the misclassification error to zero. The models were based on minimal subsets of Boolean explanatory variables describing the favorite presence of nucleotides or nucleosides localized in the different parts of the tRNA. In 90% of cases, they agree with the components of the consensus strand in a class of tRNAs loaded by a given amino acid. According to the proposed theoretical model, the values of the free energy for the entry of the recognition state in the process of tRNA charging were obtained, and the inputs from identity nucleotides and the tRNA strand backbone were distinguished. Almost all the resulting models indicated leading anticodon tandems defining the first and second positions of the anticodon (positions 35 and 36 of the tRNA strand) and the small sets (up to six positions) of the other nucleotides as the natural identity nucleotides most influential in the free energy balance. The magnitude of their input to this energy depends on the position in the strand, favoring positions −1, 35, and 36. The role of position 34 is relatively smaller. These identity attributes may not always be fully arranged in a real single adaptor molecule but were comprehensively present in a given tRNA class. A detailed analysis of the resulting models showed that the absolute value of the energy of binding the tandem 35–36 decreases with the number of identity positions, as well as with the decreasing number of possible hydrogen bonds. On the other hand, in these conditions, the absolute value of the energy of binding of other identity nucleotides increases. All the models indicate that the nucleotide-independent energy of the repulsion tRNA backbone decreases with the number of identity nucleotides. It was also shown that the total free energy change in entering the recognition state increases with the amino acid mass, making this process less spontaneous, which may have an evolutionary reference. Full article
(This article belongs to the Special Issue What Is Life?)
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Figure 1
<p>The secondary tRNA structure and the assumed numeration of positions along the strand. AA—amino acid.</p>
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<p>The recognition of tRNA as the thermodynamic process of crossing the energy barrier between the states of non-recognized and recognized tRNA. The symbols are as follows: S—the tRNA substrate, E—the tRNA-synthetase enzyme, [ES]—the enzyme–substrate complex (tied state), ΔG—the change in the Gibbs free energy, for—forward part, and rev—reversal part. The second (basic) transition state to aminoacetylation was signalized by an arrow.</p>
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<p><span class="html-italic">The attribute importance ranking evaluated for the full training set using CorrelationAttributeEval. The correlation of the attributes with the amino acid class was analyzed.</span> The colored area at the bottom indicates parts of the secondary structure of the tRNA molecule. The white area indicates loops, the red area indicates anticodons, and the same colors indicate complementary regions of stems. Position 34 (the 3rd letter of the anticodon) is surprisingly less important than other non-coding positions.</p>
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<p>(<b>a</b>). A simple logistic model of tRNA recognition. The usage of positions with a negative input (attraction) to change the free energy. (<b>b</b>). A simple logistic model of tRNA recognition. The usage of positions with positive (repulsion) input to change the free energy. The white area indicates loops, the red area indicates anticodons, and the same colors indicate complementary regions of stems.</p>
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<p>An example of identity nucleotides (red) found in the seven positions, i.e., 12, 16, 24, 35, 36, 39, and 50, in the analyzed 21 real tRNA<sup>Glu</sup> strands (for glutamine) using the simple logistic model. Other non-identity nucleotides in these positions (gray) are also shown. In this case, the mean coverage by the identity nucleotides is 64.6% of the possible area. There is no full representation of identity nucleotides in one strand. The figure illustrates the scale of the considered phenomenon, which is also common in other classes. The symbol “?” is 5-methylcytidine.</p>
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<p>The number of identity positions, real and possible cases, found with the SimpleLogistic model for different tRNA<sup>aa</sup> classes. Color meaning: blue—min_real, the minimal number found in the real tRNA<sup>aa</sup> strands; orange—max_real, the maximal number found in the real tRNA<sup>aa</sup> strands; grey—max_theor, the maximal number theoretically predicted by the SimpleLogistic model for the strand of a given tRNA<sup>aa</sup> class. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight.</p>
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<p>(<b>a</b>). The landscape of all inputs to the free energy, ΔG<sub>ijk</sub>, determined in the SimpleLogistic model for the full training set. ΔG<sub>ijk</sub> is the input to the free energy of tRNA binding to the <span class="html-italic">i</span>-th synthetase from the <span class="html-italic">j</span>-th position of the tRNA strand occupied by the k-th nucleot(s)ide. All classes and all nucleot (s)ides are considered. The point represents a single energy input value, positive or negative. Vertical bars show the maximal or minimal value. The colored area at the bottom indicates parts of the secondary structure of the tRNA molecule. The white area indicates loops, the red area indicates anticodons, and the other same colors indicate complementary regions of stems. (<b>b</b>). The example for the tRNA<sup>Gln</sup> class is extracted from (<b>a</b>).</p>
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<p>The nucleotide-independent part of the free energy change, ΔG<sup>0</sup><sub>ii</sub>, for different tRNA<sup>aa</sup> classes, calculated according to parameters of the SimpleLogistic classification, b<sub>i</sub> (Equation (1)), and the proposed formula of the theoretical model of tRNA tRNA-synthetase binding (Equation (11)). The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight.</p>
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<p>(<b>a</b>). The spatial distribution of identity nucleotides for class tRNA<sup>Ser</sup>. (<b>b</b>). The spatial distribution of identity nucleotides for class tRNA<sup>Ser2</sup>. Colors corresponds to those in <a href="#life-14-01328-f003" class="html-fig">Figure 3</a>, <a href="#life-14-01328-f004" class="html-fig">Figure 4</a>a,b, and <a href="#life-14-01328-f007" class="html-fig">Figure 7</a>a,b.</p>
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<p>The average values of the change in the free energy of binding ΔG<sub>ii</sub> for each tRNA<sup>aa</sup> class determined using Equation (9) and the parameters of Equation (1) taken from the classification task with the SimpleLogistic classifier. The standard deviation is included. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight.</p>
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<p>The values of ΔG<sub>ii</sub> and ΔG<sup>for</sup><sub>ii</sub> (=ΔG<sup>0</sup><sub>ii</sub>) are summarized on one chart to estimate strong ΔG<sup>rev</sup><sub>ii</sub> = ΔG<sub>ii</sub> − ΔG<sup>for</sup><sub>ii</sub> as a measure of the strength of tRNA and aminoacyl-tRNA synthetase attraction. The values are taken from <a href="#life-14-01328-f008" class="html-fig">Figure 8</a> and <a href="#life-14-01328-f010" class="html-fig">Figure 10</a>. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight.</p>
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<p>The simultaneous dependence of free energy parts—reversal limited only to the anticodon tandem, ΔG<sup>rev</sup><sub>ii</sub>(tan); the rest of the reversal energy without the anticodon tandem, ΔG<sup>rev</sup><sub>ii</sub>|tan; and forward, ΔG<sup>for</sup><sub>ii</sub>, on the maximal number of possible identity points, N<sub>IP</sub>. Standard variations are 1.45, 1.49, and 1.21, respectively.</p>
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<p>The dependence of the change in total free energy ΔG<sub>ii</sub> on N<sub>IP</sub>. Standard variations are shown.</p>
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<p>The dependence of the energy of tRNA attraction to aminoacyl-tRNA synthetase in the area of the anticodon tandem on the anticodon contents (G, C, A, and U). ΔG<sup>rev</sup><sub>n</sub> is the reversal energy limited to only one position (35 or 36) and one nucleotide type. Standard variations are shown.</p>
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<p>The dependence of the total energy of the attraction on the actual number of possible hydrogen bonds in a given real identity ensemble of the tRNA<sup>Glu</sup> class. ΔG<sup>rev</sup><sub>ii’</sub> represents the reversal part of free energy change for real cases of the same subsets of identity nucleotides in the tRNA<sup>Glu</sup> strands with the anticodon tandem 35U and 36C. Empty squares represent a priori zero and the theoretical value of the free energy change for the maximal number of hydrogen bonds in the case of all identity nucleotides presented.</p>
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<p>(<b>a</b>). Consensus free energy change ΔG<sub>ij</sub>” estimated with the parameters of the final classification task but for the nucleotides present in the consensus strands of different classes. The horizontal line represents the energy of the reduced binding real tRNA<sup>Gln</sup> strand. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight. (<b>b</b>). The consensus free energy change ΔG<sub>ij</sub>” estimated with the parameters of the final classification task but for the nucleotides present in the consensus strands of different classes. The horizontal line represents the energy of the reduced binding real tRNA<sup>His</sup> strands. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight. (<b>c</b>). The consensus free energy change ΔG<sub>ij</sub>” estimated with the parameters of the final classification task but for the nucleotides present in the consensus strands of different classes. The horizontal line represents the energy of the reduced binding real tRNA<sup>LysII</sup> strands. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight.</p>
Full article ">Figure 16 Cont.
<p>(<b>a</b>). Consensus free energy change ΔG<sub>ij</sub>” estimated with the parameters of the final classification task but for the nucleotides present in the consensus strands of different classes. The horizontal line represents the energy of the reduced binding real tRNA<sup>Gln</sup> strand. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight. (<b>b</b>). The consensus free energy change ΔG<sub>ij</sub>” estimated with the parameters of the final classification task but for the nucleotides present in the consensus strands of different classes. The horizontal line represents the energy of the reduced binding real tRNA<sup>His</sup> strands. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight. (<b>c</b>). The consensus free energy change ΔG<sub>ij</sub>” estimated with the parameters of the final classification task but for the nucleotides present in the consensus strands of different classes. The horizontal line represents the energy of the reduced binding real tRNA<sup>LysII</sup> strands. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight.</p>
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<p>The energy of the less bound strands, maxΔG<sub>ii</sub>, for different classes. The tRNA<sup>aa</sup> classes are presented according to increasing amino acid molecular weight.</p>
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<p>The electric charge [e], positive and negative, of aminoacyl-tRNA synthetases at a pH of 7.0 related to amino acids. The net charge is, in most cases, negative.</p>
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<p>The coverage of identity nucleot(s)ides vs. the maximal number of identity points, N<sub>IP</sub>. Only non-repulsing identity nucleotides were calculated.</p>
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<p>The molecular weight of charging amino acid, MW, and N<sub>IP</sub> of the tRNA<sup>aa</sup> classes shown in the field of discussed parameter values, with the indicated aa metabolic families, i.e., serine (Ser, Ser2, Gly, and Cys), pyruvate (Ala, Val, Leu, and Leu2), aspartate (Asp, Asn, LysI, LysII, Met, Thr, and Ile), glutamate (Glu, Gln, Pro, Arg, and Arg2), histidine (His), and aromatic (Phe, Trp, and Tyr).</p>
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<p>The average free energy change ΔG<sub>ii</sub> vs. molecular weight of the corresponding amino acid. Two weight groups of amino acids were distinguished: below and above 150 [Dalton]. Empty markers indicate E-glutamic acid and H-histidine. Histidine has the most similar consensus strand to glutamic acid and vice versa.</p>
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<p>The identity positions determined by the model and reported in the literature. Note: to avoid overestimation, in the report’s analysis [<a href="#B22-life-14-01328" class="html-bibr">22</a>], the complementary nucleotide pairs were counted as units. In the analysis of the positions determined by the presented model, class LysI was omitted.</p>
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34 pages, 2635 KiB  
Review
Transition into Distance Education: A Scoping Review
by Roxana Schweighart, Michael Hast, Anna Maria Pampel, Julian Alexander Rebien and Caroline Trautwein
Educ. Sci. 2024, 14(10), 1130; https://doi.org/10.3390/educsci14101130 - 17 Oct 2024
Viewed by 134
Abstract
The number of students enrolling in distance learning programmes is rising worldwide, making distance education (DE) a significant part of higher education (HE). Transitioning into a study programme involves numerous challenges, especially for distance learners who face higher dropout rates and compromised academic [...] Read more.
The number of students enrolling in distance learning programmes is rising worldwide, making distance education (DE) a significant part of higher education (HE). Transitioning into a study programme involves numerous challenges, especially for distance learners who face higher dropout rates and compromised academic performance compared to traditional on-campus students. However, when students master these challenges, study success becomes more likely. Nevertheless, knowledge about transitioning into DE remains limited. This scoping review aims to compile existing knowledge and enhance understanding of the critical initial phase of DE by answering the research question: “What is known about the transition into DE in HE?”. Following the methodological steps outlined in the PRISMA-ScR checklist, we identified 60 sources from five databases, meeting inclusion criteria through a multi-stage screening process. These articles were analysed using qualitative content analysis. We developed a category system with 12 main categories: 1. Process of transition into DE; 2. Reasons for choosing DE; 3. Characteristics of distance learners; 4. Academic success and failure; 5. General assessment of DE; 6. Differences between face-to-face and DE; 7. Advantages of DE; 8. Challenges of DE; 9. Critical life events; 10. Coping strategies; 11. Add-on initiatives; and 12. Recommendations for DE. The results underline the complexity of the transition into DE, which has unique patterns for each student. The article concludes with practical implications and recommendations for supporting the transition into DE. Full article
(This article belongs to the Section Higher Education)
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<p>Search flowchart following PRISMA guidelines.</p>
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<p>Mind map of the category system, with main categories in dark blue and subcategories in light blue.</p>
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<p>Positive aspects of the transition into distance education.</p>
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<p>Challenges of the transition into distance education.</p>
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<p>Preferences, recommendations, and suggestions for improvement in managing the transition into distance education.</p>
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14 pages, 2818 KiB  
Article
α-Terpineol Induces Shelterin Components TRF1 and TRF2 to Mitigate Senescence and Telomere Integrity Loss via A Telomerase-Independent Pathway
by Marianna Kapetanou, Sophia Athanasopoulou, Andreas Goutas, Dimitra Makatsori, Varvara Trachana and Efstathios Gonos
Antioxidants 2024, 13(10), 1258; https://doi.org/10.3390/antiox13101258 - 17 Oct 2024
Viewed by 229
Abstract
Cellular senescence is a hallmark of aging characterized by irreversible growth arrest and functional decline. Progressive telomeric DNA shortening in dividing somatic cells, programmed during development, leads to critically short telomeres that trigger replicative senescence and thereby contribute to aging. Therefore, protecting telomeres [...] Read more.
Cellular senescence is a hallmark of aging characterized by irreversible growth arrest and functional decline. Progressive telomeric DNA shortening in dividing somatic cells, programmed during development, leads to critically short telomeres that trigger replicative senescence and thereby contribute to aging. Therefore, protecting telomeres from DNA damage is essential in order to avoid entry into senescence and organismal aging. In several organisms, including mammals, telomeres are protected by a protein complex named shelterin that prevents DNA damage at the chromosome ends through the specific function of its subunits. Here, we reveal that the nuclear protein levels of shelterin components TRF1 and TRF2 decline in fibroblasts reaching senescence. Notably, we identify α-terpineol as an activator that effectively enhances TRF1 and TRF2 levels in a telomerase-independent manner, counteracting the senescence-associated decline in these crucial proteins. Moreover, α-terpineol ameliorates the cells’ response to oxidative DNA damage, particularly at the telomeric regions, thus preserving telomere length and delaying senescence. More importantly, our findings reveal the significance of the PI3K/AKT pathway in the regulation of shelterin components responsible for preserving telomere integrity. In conclusion, this study deepens our understanding of the molecular pathways involved in senescence-associated telomere dysfunction and highlights the potential of shelterin components to serve as targets of therapeutic interventions, aimed at promoting healthy aging and combating age-related diseases. Full article
(This article belongs to the Special Issue Antioxidants as Anti-Aging Interventions)
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<p>Terpineol extends replicative lifespan. (<b>A</b>) Chemical structure of α-terpineol. (<b>B</b>) Number of cumulative population doublings (CPDs) of human embryonic fibroblasts continuously treated with 0.5 μg/mL α-terpineol or the diluent DMSO (control) as a function of time in culture. (<b>C</b>) Immunoblot analysis of the senescence markers p16, p21 and p53 in cellular extracts from early-passage fibroblasts treated with 0.5 μg/mL α-terpineol or the diluent DMSO (control) for 24 h and terminally senescent fibroblasts grown in media continuously supplemented with 0.5 μg/mL α-terpineol or the diluent DMSO (control), throughout their lifespan. The values of early-passage (T0) control cells were arbitrarily set to 1 or 100% in all described assays and normalization was performed using the total protein load to ensure equal protein loading.</p>
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<p>α-Terpineol preserves telomere length during senescence via the shelterin components TRF1 and TRF2: (<b>A</b>) Analysis of the indicative telomere length T/S ratio in early-passage (t0) and terminally senescent human fibroblasts grown in media continuously supplemented with 0.5 μg/mL α-terpineol or the diluent DMSO (control), throughout their lifespan. (<b>B</b>) Assessment of telomerase activity in human fibroblasts grown in media supplemented with 0.5 μg/mL α-terpineol or the diluent DMSO (control) for 48 h. (<b>C</b>) Immunoblot analysis of TRF1 and TRF2 in nuclear extracts from early-passage fibroblasts treated with 0.5 μg/mL α-terpineol or the diluent DMSO (control) for 24 h and terminally senescent fibroblasts grown in media continuously supplemented with 0.5 μg/mL α-terpineol or the diluent DMSO (control), throughout their lifespan. The values of early-passage (T0) control cells were arbitrarily set to 1 or 100% in all described assays and normalization was performed using the total protein load to ensure equal protein loading. **: <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>Treatment with terpineol reduces oxidative stress-induced DNA damage and enhances cellular resistance. (<b>A</b>) Number of fibroblasts treated with terpineol or DMSO (solvent control) for 24 h following treatment with 300 μM H<sub>2</sub>O<sub>2</sub> for 2.5 h and a five-day recovery period. (<b>B</b>) Quantification of the percentage of γH2AΧ-positive cells and (<b>C</b>) representative images of human fibroblasts treated with α-terpineol or DMSO (solvent control) for 24 h following treatment with 300 μM H<sub>2</sub>O<sub>2</sub> for 2.5 h. γH2AΧ was detected using an anti-γH2AΧ (green) antibody. DNA is visualized using DAPI (4′, 6′-diamidino-2-phenylindole) (blue). Representative images of nuclei and γH2AΧ are shown with or without H<sub>2</sub>O<sub>2</sub> treatment. ****: <span class="html-italic">p</span> &lt; 0.0001, *: <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>α-Terpineol protects from oxidative stress-induced telomere-specific DNA damage. Telomere dysfunction-induced foci (TIF) assay in human fibroblasts treated with α-terpineol or DMSO (solvent control) for 24 h following treatment with 300 μM H<sub>2</sub>O<sub>2</sub> for 2.5 h. Colocalization of ΤRF2 and γH2AΧ was determined using anti-TRF2 (red) and anti-γH2AΧ (green) antibodies. DNA was visualized using DAPI (4′, 6′-diamidino-2-phenylindole) (blue). Cells with ten or more TIFs were scored as TIF-positive. Representative images of nuclei, TRF2 and γH2AΧ are shown with or without H<sub>2</sub>O<sub>2</sub> treatment. ***: <span class="html-italic">p</span> &lt; 0.001, **: <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>α-Terpineol reduces oxidative damage of nuclear proteins and shelterin components during senescence. % levels of oxidized proteins in (<b>A</b>) total and (<b>B</b>) nuclear extracts from early-passage fibroblasts treated with 0.5 μg/mL α-terpineol or the diluent DMSO (control) for 24 h and terminally senescent fibroblasts grown in media continuously supplemented with 0.5 μg/mL α-terpineol or the diluent DMSO (control), throughout their lifespan. (<b>C</b>) Immunoblot analysis of (<b>i</b>) oxidized proteins in TRF1 precipitates and (<b>ii</b>) γH2A.X in nuclear extracts from early-passage fibroblasts treated with 0.5 μg/mL α-terpineol or the diluent DMSO (control) for 24 h and terminally senescent fibroblasts grown in media continuously supplemented with 0.5 μg/mL α-terpineol or the diluent DMSO (control), throughout their lifespan. The signal in early-passage (T0) control cells was arbitrarily set to 100% in all described assays and normalization was performed using the total protein load to ensure equal protein loading. **: <span class="html-italic">p</span> &lt; 0.01, *: <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>PI3K/AKT signaling mediates the effects of α-terpineol in shelterin components. Immunoblot analysis of the indicated proteins in the (<b>A</b>) total protein load of early-passage fibroblasts treated with 0.5 μg/mL α-terpineol for the indicated timepoints and (<b>B</b>) nuclear protein extracts from early-passage fibroblasts treated with 0.5 μg/mL α-terpineol or the diluent (DMSO) and the PI3K/AKT inhibitor miransertib for 24 h, as indicated. The signal in control cells was arbitrarily set to 100% in all described assays and normalization was performed using the total protein load to ensure equal protein loading. H2A.X was used as a nuclear protein marker.</p>
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23 pages, 1228 KiB  
Article
The Integration of Mixed Reality Simulation into Reading Literacy Modules
by Carisma Nel, Lisa Dieker and Elma Marais
Educ. Sci. 2024, 14(10), 1128; https://doi.org/10.3390/educsci14101128 - 17 Oct 2024
Viewed by 172
Abstract
The reading literacy crisis, among learners, in countries throughout the world and in South Africa seems to be reaching pandemic levels. Hence, the quality of teaching and the preparation that pre-service teachers receive at initial teacher education institutions is under the spotlight. A [...] Read more.
The reading literacy crisis, among learners, in countries throughout the world and in South Africa seems to be reaching pandemic levels. Hence, the quality of teaching and the preparation that pre-service teachers receive at initial teacher education institutions is under the spotlight. A proactive action research design is used to integrate mixed reality simulation into reading literacy modules. Our data collection methods included professional conversations, WhatsApp voice notes and video calls, reflective journal entries and reflections on observing video recordings of lesson segments in the MRS environment. The data was analyzed using content analysis. The main themes emanating from the data included: lack of focus on high leverage teaching practices, limited use of pedagogies of enactment, add-on to existing content, experimentation, perceptions, planning and preparation, content-method integration, pedagogies of enactment, assessment, resources and feedback. Grounded in a Community of Practice framework, we narrate our experiences of re-imagining mixed reality simulation as a core component of initial teacher education programs. The authors conclude by sharing insights and recommendations for policymakers, faculty leaders, and curriculum designers, contributing to informed decisions regarding integrating and potentially upscaling mixed reality simulation within reading literacy modules in initial teacher education programs. Full article
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<p>Action Learning and Review Cycle (ALRC).</p>
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<p>Lesson Planning Framework.</p>
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19 pages, 11260 KiB  
Article
Typhoon Early Warning and Monitoring Based on the Comprehensive Characteristics of Oceanic and Ionospheric Echoes from HFSWR: The Case of Typhoon Muifa
by Menghua Jiang, Yonggang Ji, Ruozhao Qu, Hao Zhang and Jianqiang Du
Remote Sens. 2024, 16(20), 3854; https://doi.org/10.3390/rs16203854 - 17 Oct 2024
Viewed by 228
Abstract
As devastating natural disasters, typhoons pose a tremendous threat to human society, making effective typhoon early warning and monitoring crucial. To address this challenge, High Frequency Surface Wave Radar (HFSWR), which can observe oceanic parameters such as typhoon wind fields in real time [...] Read more.
As devastating natural disasters, typhoons pose a tremendous threat to human society, making effective typhoon early warning and monitoring crucial. To address this challenge, High Frequency Surface Wave Radar (HFSWR), which can observe oceanic parameters such as typhoon wind fields in real time and even capture the dynamic changes in the ionosphere, has become an effective tool for typhoon monitoring. This paper investigates the interaction mechanisms about Typhoon-Acoustic Gravity Waves (AGWs)-Ionosphere, as well as Typhoon-Ocean Waves for HFSWR, and simulates these interaction processes within HFSWR. Then a typhoon early warning and monitoring scheme for HFSWR has been proposed: In the first stage, the S-shaped ionospheric disturbances observed by HFSWR are utilized as precursor signals for early typhoon warnings. In addition, the second stage involves analyzing changes in first-order oceanic echo spectral peak ratio to pinpoint when the typhoon eye enters the radar detection range, thus initiating the typhoon monitoring phase. Subsequently, the measured data from HFSWR collected during Typhoon “Muifa” (2212) in conjunction with the proposed scheme are evaluated in detail. The results indicate that AGWs generated by typhoons can propagate into non-typhoon areas within the detection range, causing S- shaped ionospheric disturbances and providing approximately 6 h of early warning. At around 8:05 (UTC+8), an increasing trend in the first-order spectral peak ratio was noted, indicating the entry of the typhoon eye into the detection range, which closely aligns with the official typhoon path and marks the transition to the monitoring phase. The proposed scheme is expected to enhance the capability for typhoon early warning and real-time monitoring in specific sea areas and mitigate the risks associated with typhoon-related disasters. Full article
(This article belongs to the Special Issue Innovative Applications of HF Radar (Second Edition))
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<p>Schematic diagram of the interactions between HFSWR and ocean waves, as well as HFSWR and ionosphere during a typhoon period.</p>
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<p>Simulations of wind direction and first-order oceanic echo spectra under the influence of a typhoon. (<b>a</b>–<b>c</b>) Simulations of wind direction before, during, and after the typhoon passage, respectively. (<b>d</b>–<b>f</b>) Simulations of two-dimensional spectrum before, during, and after the typhoon passage, respectively. (<b>g</b>–<b>i</b>) Simulations of one-dimensional spectrum (range = 70 km) before, during, and after the typhoon passage, respectively.</p>
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<p>Simulations of the AGWs under the influence of a typhoon. (<b>a</b>) The propagation time of AGWs is 0 min. (<b>b</b>) The propagation time of AGWs is 14.92 min.</p>
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<p>Simulations of the variations in electron density under the influence of AGWs. (<b>a</b>) The propagation time of TIDs is 22 min. (<b>b</b>) The propagation time of TIDs is 300 min.</p>
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<p>Simulations of TFD based on the ionospheric echo spectrum. (<b>a</b>) Simulations when the TIDs exist within the radar detection range. (<b>b</b>) Simulations when there are no TIDs within the radar detection range.</p>
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<p>Flowchart for typhoon early warning and monitoring using HFSWR.</p>
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<p>The path of typhoon Muifa around the Bohai Sea.</p>
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<p>The distance between the typhoon and the radar station.</p>
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<p>Geomagnetic activity on 16 September 2022.</p>
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<p>The RD spectra based on HFSWR. (<b>a</b>) The RD spectrum at 3:00 a.m. (<b>b</b>) The RD spectrum at 8:00 a.m. (<b>c</b>) The RD spectrum at 10:30 a.m. (<b>d</b>) The RD spectrum at 14:00 p.m.</p>
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<p>The results before the typhoon entered radar detection range. (<b>a</b>) Time-Doppler and disturbance detection results at 309 km. (<b>b</b>) Time-Doppler results at 305 km. (<b>c</b>) Time-Doppler results at 311 km.</p>
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<p>The results when the typhoon entered radar’s detection range.</p>
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<p>The results when the typhoon exited radar’s detection range.</p>
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<p>The results of the first-order peak energy ratio.</p>
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<p>The disturbance detection results of ionospheric and sea echoes based on HFSWR.</p>
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32 pages, 5551 KiB  
Review
Unveiling the Interplay—Vitamin D and ACE-2 Molecular Interactions in Mitigating Complications and Deaths from SARS-CoV-2
by Sunil J. Wimalawansa
Biology 2024, 13(10), 831; https://doi.org/10.3390/biology13100831 - 16 Oct 2024
Viewed by 434
Abstract
The interaction of the SARS-CoV-2 spike protein with membrane-bound angiotensin-converting enzyme-2 (ACE-2) receptors in epithelial cells facilitates viral entry into human cells. Despite this, ACE-2 exerts significant protective effects against coronaviruses by neutralizing viruses in circulation and mitigating inflammation. While SARS-CoV-2 reduces ACE-2 [...] Read more.
The interaction of the SARS-CoV-2 spike protein with membrane-bound angiotensin-converting enzyme-2 (ACE-2) receptors in epithelial cells facilitates viral entry into human cells. Despite this, ACE-2 exerts significant protective effects against coronaviruses by neutralizing viruses in circulation and mitigating inflammation. While SARS-CoV-2 reduces ACE-2 expression, vitamin D increases it, counteracting the virus’s harmful effects. Vitamin D’s beneficial actions are mediated through complex molecular mechanisms involving innate and adaptive immune systems. Meanwhile, vitamin D status [25(OH)D concentration] is inversely correlated with severity, complications, and mortality rates from COVID-19. This study explores mechanisms through which vitamin D inhibits SARS-CoV-2 replication, including the suppression of transcription enzymes, reduced inflammation and oxidative stress, and increased expression of neutralizing antibodies and antimicrobial peptides. Both hypovitaminosis D and SARS-CoV-2 elevate renin levels, the rate-limiting step in the renin-angiotensin-aldosterone system (RAS); it increases ACE-1 but reduces ACE-2 expression. This imbalance leads to elevated levels of the pro-inflammatory, pro-coagulatory, and vasoconstricting peptide angiotensin-II (Ang-II), leading to widespread inflammation. It also causes increased membrane permeability, allowing fluid and viruses to infiltrate soft tissues, lungs, and the vascular system. In contrast, sufficient vitamin D levels suppress renin expression, reducing RAS activity, lowering ACE-1, and increasing ACE-2 levels. ACE-2 cleaves Ang-II to generate Ang(1–7), a vasodilatory, anti-inflammatory, and anti-thrombotic peptide that mitigates oxidative stress and counteracts the harmful effects of SARS-CoV-2. Excess ACE-2 molecules spill into the bloodstream as soluble receptors, neutralizing and facilitating the destruction of the virus. These combined mechanisms reduce viral replication, load, and spread. Hence, vitamin D facilitates rapid recovery and minimizes transmission to others. Overall, vitamin D enhances the immune response and counteracts the pathological effects of SARS-CoV-2. Additionally, data suggests that widely used anti-hypertensive agents—angiotensin receptor blockers and ACE inhibitors—may lessen the adverse impacts of SARS-CoV-2, although they are less potent than vitamin D. Full article
(This article belongs to the Special Issue SARS-CoV-2 and Immunology)
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<p>Infections and immune-related broader functions of vitamin D (calcitriol, 1,25(OH)<sub>2</sub>D). The figure illustrates muti-system-wide functions of vitamin D related through the modulation of innate and adaptive immune systems, resulting in lowering complications from infections and chronic disease burdens [⇧ = increased; ⇩ = reduced; RAS: renin-angiotensin-system; CVS: cardiovascular system] (after Wimalawansa, Nutrients, 2022) [<a href="#B51-biology-13-00831" class="html-bibr">51</a>].</p>
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<p>Pathological and physiological responses of the renin-angiotensin system. Peach and green boxes illustrate the renin-angiotensin system’s regulatory and counter-regulatory physiologic pathways. When excess angiotensin-II (Ang-II) is synthesized, as in the case of hypovitaminosis D and SARS-CoV-2 infection, this leads to the over-activation of the AT1 receptors (AT1-R) with pathological manifestations, as indicated in the peach colored boxes [⇧ = increased; ⇩ = reduced; ARDS = acute respiratory distress syndrome; RAS, renin-angiotensin system; ACE, angiotensin-converting enzyme; ACE-2, angiotensin-converting enzyme 2; Ang 1–7, angiotensin 1–7; Ang-I, angiotensin-I; Ang-II, angiotensin-II; AT1R, type 1 angiotensin-II receptor; MasR, MAS proto-oncogene receptor. PHT, pulmonary hypertension].</p>
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<p>This diagram outlines the status of the renin-angiotensin axis (RAS) axis: (<b>A</b>) physiological status, (<b>B</b>) pathological/activated status in the presence of vitamin D deficiency, and (<b>C</b>) following SARS-CoV-2 infection. RAS axis homeostasis is disrupted by hypovitaminosis D. SARS-CoV-2 or other coronal viral infections markedly activate the RAS, leading to pathologically elevated levels of angiotensin -II and the suppression of ACE-2. This hyperactivation of the RAS leads to increased complications and mortality (⇧ = increased; ⇩ = reduced; ACE: angiotensin-converting enzyme; ARB: angiotensin receptor blockers; AT1R: type 1 angiotensin-II receptor; ARDS: acute respiratory distress syndrome).</p>
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<p>Vit D strengthens innate and adaptive immune systems. This summary outlines the correlation between vitamin D, angiotensin-converting enzyme-2 (ACE-2), angiotensin-converting enzyme inhibitors (ACEi), and angiotensin II receptor blockers (ARBs) concerning severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and their impact on COVID-19 morbidity and mortality ([↑ = increased; ↓ = reduced; RAS: renin-angiotensin-system; CVS: cardiovascular system; ACE: angiotensin-converting enzyme; ARB: angiotensin receptor blockers; AT1R: type 1 angiotensin-II receptor; ARDS: acute respiratory distress syndrome; HTN: hypertension).</p>
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33 pages, 10254 KiB  
Systematic Review
Schistosomiasis–Microbiota Interactions: A Systematic Review and Meta-Analysis
by Philip Afful, Godwin Kwami Abotsi, Czarina Owusua Adu-Gyamfi, George Benyem, Gnatoulma Katawa, Samuel Kyei, Kathrin Arndts, Manuel Ritter and Kwame Kumi Asare
Pathogens 2024, 13(10), 906; https://doi.org/10.3390/pathogens13100906 - 16 Oct 2024
Viewed by 723
Abstract
Introduction: Schistosomiasis, a tropical disease affecting humans and animals, affected 251.4 million people in 2021. Schistosoma mansoni, S. haematobium, S. intercalatum, and S. japonicum are primary human schistosomes, causing tissue damage, granulomas, ulceration, hemorrhage, and opportunistic pathogen entry. The gut [...] Read more.
Introduction: Schistosomiasis, a tropical disease affecting humans and animals, affected 251.4 million people in 2021. Schistosoma mansoni, S. haematobium, S. intercalatum, and S. japonicum are primary human schistosomes, causing tissue damage, granulomas, ulceration, hemorrhage, and opportunistic pathogen entry. The gut and urinary tract microbiota significantly impact a host’s susceptibility to schistosomiasis, disrupting microbial balance; however, this relationship is not well understood. This systematic review and meta-analysis explores the intricate relationship between schistosomiasis and the host’s microbiota, providing crucial insights into disease pathogenesis and management. Methods: This systematic review used PRISMA guidelines to identify peer-reviewed articles on schistosomiasis and its interactions with the host microbiome, using multiple databases and Google Scholar, providing a robust dataset for analysis. The study utilized Meta-Mar v3.5.1; descriptive tests, random-effects models, and subgroups were analyzed for the interaction between Schistosomiasis and the microbiome. Forest plots, Cochran’s Q test, and Higgins’ inconsistency statistic (I2) were used to assess heterogeneity. Results: The human Schistosoma species were observed to be associated with various bacterial species isolated from blood, stool, urine, sputum, skin, and vaginal or cervical samples. A meta-analysis of the interaction between schistosomiasis and the host microbiome, based on 31 studies, showed 29,784 observations and 5871 events. The pooled estimates indicated a significant association between schistosomiasis and changes in the microbiome of infected individuals. There was considerable heterogeneity with variance effect sizes (p < 0.0001). Subgroup analysis of Schistosoma species demonstrated that S. haematobium was the most significant contributor to the overall heterogeneity, accounting for 62.1% (p < 0.01). S. mansoni contributed 13.0% (p = 0.02), and the coinfection of S. haematobium and S. mansoni accounted for 16.8% of the heterogeneity (p < 0.01), contributing to the variability seen in the pooled analysis. Similarly, praziquantel treatment (RR = 1.68, 95% CI: 1.07–2.64) showed high heterogeneity (Chi2 = 71.42, df = 11, p < 0.01) and also indicated that Schistosoma infections in males (RR = 1.46, 95% CI: 0.00 to 551.30) and females (RR = 2.09, 95% CI: 0.24 to 18.31) have a higher risk of altering the host microbiome. Conclusions: Schistosomiasis significantly disrupts the host microbiota across various bodily sites, leading to increased susceptibility to different bacterial taxa such as E. coli, Klebsiella, Proteus, Pseudomonas, Salmonella, Staphylococcus, Streptococcus, and Mycobacterium species (M. tuberculosis and M. leprae). This disruption enables these bacteria to produce toxic metabolites, which in turn cause inflammation and facilitate the progression of disease. The impact of schistosomiasis on the vaginal microbiome underscores the necessity for gender-specific approaches to treatment and prevention. Effective management of female genital schistosomiasis (FGS) requires addressing both the parasitic infection and the resulting microbiome imbalances. Additionally, praziquantel-treated individuals have different microbiome compositions compared to individuals with no praziquantel treatment. This suggests that combining praziquantel treatment with probiotics could potentially decrease the disease severity caused by an altered microbiome. Full article
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<p>PRISMA flow chart for search and selection of included studies.</p>
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<p>The geographical distribution of the included studies. The red indicates the various studies and the countries where they were conducted.</p>
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<p>Forest plot showing the risk ratio of schistosomiasis and bacterial infections from 31 studies.</p>
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<p>Forest plot showing the risk difference of schistosomiasis and bacterial infections from 31 studies.</p>
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<p>Forest plot showing the risk ratio of schistosomiasis and bacterial infection based on <span class="html-italic">Schistosoma</span> species.</p>
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<p>Forest plot showing the risk difference of schistosomiasis and bacterial infection based on <span class="html-italic">Schistosoma</span> species.</p>
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<p>Forest plot showing the risk ratio of schistosomiasis and bacterial infection based on praziquantel treatment.</p>
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<p>Forest plot showing the risk difference of schistosomiasis and bacterial infection based on praziquantel treatment.</p>
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<p>Forest plot showing the risk ratio of schistosomiasis and bacterial infection based on gender.</p>
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<p>Forest plot showing the risk difference of schistosomiasis and bacterial infection based on gender.</p>
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<p>Boxplot showing the effect size distribution of <span class="html-italic">Schistosoma</span> species among schistosomiasis and bacterial coinfection; (<b>a</b>) effect size calculation from risk ratio, (<b>b</b>) effect size calculation from risk difference.</p>
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<p>Funnel plot (Trim and Fill) showing asymmetrical distribution for schistosomiasis and bacterial infection from the 31 studies; (<b>a</b>) assess publication bias based on risk ratio analysis, (<b>b</b>) assess publication bias based on risk difference analysis.</p>
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<p>Funnel plot (Trim and Fill) showing asymmetrical distribution for schistosomiasis and bacterial infection from the 31 studies; (<b>a</b>) assess publication bias based on risk ratio analysis, (<b>b</b>) assess publication bias based on risk difference analysis.</p>
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<p>Interplay of schistosome infection, microbiome, and immune system.</p>
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16 pages, 1655 KiB  
Review
The Role of Seed Characteristics on Water Uptake Preceding Germination
by Prerana Upretee, Manjula S. Bandara and Karen K. Tanino
Seeds 2024, 3(4), 559-574; https://doi.org/10.3390/seeds3040038 - 16 Oct 2024
Viewed by 300
Abstract
Seed germination is a complex process involving imbibition, activation and subsequent growth. In addition to re-establishing metabolic activity, water uptake helps stabilize macromolecules and biochemical reactions, resulting in radicle protrusion. Factors affecting water uptake include seed composition, water availability and seed coat permeability. [...] Read more.
Seed germination is a complex process involving imbibition, activation and subsequent growth. In addition to re-establishing metabolic activity, water uptake helps stabilize macromolecules and biochemical reactions, resulting in radicle protrusion. Factors affecting water uptake include seed composition, water availability and seed coat permeability. Water entry sites vary with species and occur primarily through the hilum, micropyle or lens. In addition, seed size influences water uptake, where larger seeds are usually less permeable. The seed coat plays a significant role in regulating the water absorption process. Several seed coat characteristics, including color, thickness and differences in the anatomical structure, such as the presence of pores, cuticles and radicle pockets, alter water permeability. Similarly, the presence of either physical or physiological seed dormancy negatively affects water uptake. This review emphasizes that understanding seed characteristics, such as size, shape and seed coat permeability, and their relationships is essential for breeding and selecting seeds with desirable traits, as they directly influence water uptake, leading to improved germination and growth. Full article
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<p>(<b>A</b>) Schematic drawing of anatomical structure of chickpea seed coat; (<b>B</b>) Generalized scheme of the seed coat morphology commonly found in Fabaceae seeds <sup>1</sup> (modified from Smýkal et al. [<a href="#B13-seeds-03-00038" class="html-bibr">13</a>]). <sup>1</sup> Abbreviations: r—raphe; l—lens; h—hilum; hf—hilar fissure; m—micropyle; rl—radicular lobe. Raphe—Refers to a seam or ridge found on seeds, which often results from the fusion of the funicle (seed stalk) to the integument of the ovule. Lens—Also called the strophiole, it is considered to act as a water gap. Hilum—A scar that appears on the seed coat when it separates from the parent plant and indicates the location of the joint between the seed coat and funiculus. Hilar fissure—It acts as a hygroscopically activated valve, which opens when relative humidity is low and vice versa. Micropyle—A slight depression that is visible at one end of the hilum of the seed coat. Radicular lobe—It serves as a gateway for the emerging root during germination.</p>
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<p>Staining of the <span class="html-italic">Gleditsia sinensis</span> seeds. (<b>i</b>) Control seed; staining after (<b>ii</b>) 6h; (<b>iii</b>) 12h; (<b>iv</b>) 24h; (<b>v</b>) 48h; (<b>vi</b>) 72h. The embryos were stained in 0.5% 2,3,5-triphenyltetrazolium chloride (TTC). The red stains indicate the pathway of water entry in the seeds (modified from Zhu et al. [<a href="#B17-seeds-03-00038" class="html-bibr">17</a>]).</p>
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<p>Schematic diagrams of the three basic types of water gap (modified from Gama-Arachchige et al. [<a href="#B87-seeds-03-00038" class="html-bibr">87</a>]).</p>
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<p>Models showing ROS, NO and ABA crosstalk in seeds (modified from Arc et al. [<a href="#B113-seeds-03-00038" class="html-bibr">113</a>]).</p>
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13 pages, 265 KiB  
Article
The Discursive Configuration of the Therapeutic Community for Substance Users: Positioning and Ethnopsychological Processes Concerning Entry
by Antonio Iudici, Tobia Berardelli, Davide Fenini, Emiliano Subissi and Jessica Neri
Behav. Sci. 2024, 14(10), 951; https://doi.org/10.3390/bs14100951 - 15 Oct 2024
Viewed by 309
Abstract
Therapeutic communities face high drop-out rates and general distrust of their effectiveness among substance users. Actively involving users early in treatment promotes greater compliance with the treatment and is predictive of better outcomes. However, users often occupy a passive and subordinate role, exacerbated [...] Read more.
Therapeutic communities face high drop-out rates and general distrust of their effectiveness among substance users. Actively involving users early in treatment promotes greater compliance with the treatment and is predictive of better outcomes. However, users often occupy a passive and subordinate role, exacerbated by the lack of research that explores their perspectives, beliefs, and experiences. This study examined the discourses of 57 consumers who were part of a community for less than 15 days, investigating the meanings attributed to service entry and treatment. A protocol of four written open-ended questions was employed and analysed through discourse analysis and positioning theory. The results indicate that participants configure the community as a place symbolically and spatially distinct from the rest of the world, where they isolate themselves to seek support during times of extreme difficulty. However, what they are seeking is a solution to acute distress caused by substance use, intertwined with social, economic, and relational issues. The concept of treatment is built on the image of the substance user as an individual making a weak request for help, attributing the problem solely to drugs and exhibiting reduced agency in addressing their issues. The collected texts provide a better understanding of the experiences of new users, highlighting the importance of co-constructing personalised projects that empower consumers to feel actively involved in their own change, exploring their theories and definitions of self to structure pathways based strictly on their needs. Full article
(This article belongs to the Special Issue Promoting Behavioral Change to Improve Health Outcomes)
14 pages, 989 KiB  
Article
Development and Pilot Study of myfood24 West Africa—An Online Tool for Dietary Assessment in Nigeria
by Chinwe Adaugo Uzokwe, Chiaka Charles Nkwoala, Bassey E. Ebenso, Sarah Beer, Grace Williams, Gideon Onyedikachi Iheme, Chihurumnanya Gertrude Opara, Rasaki A. Sanusi, Henrietta Nkechi Ene-Obong and Janet E. Cade
Nutrients 2024, 16(20), 3497; https://doi.org/10.3390/nu16203497 (registering DOI) - 15 Oct 2024
Viewed by 353
Abstract
Background and objective: Tools to accurately and efficiently measure dietary intake in Nigeria are lacking. We aimed to develop and assess the usability of a new online dietary assessment tool for Nigeria—myfood24 West Africa. Methods: We developed the myfood24 West Africa database using [...] Read more.
Background and objective: Tools to accurately and efficiently measure dietary intake in Nigeria are lacking. We aimed to develop and assess the usability of a new online dietary assessment tool for Nigeria—myfood24 West Africa. Methods: We developed the myfood24 West Africa database using data from existing food composition tables, packaged foods labels and research articles. The development followed seven steps: identified data sources, selected foods, processed/cleaned the data, calculated the nutrient content of recipes, created and allocated portion sizes, quality-checked the database and developed food accompaniments. To pilot the tool, we recruited 179 university staff in Nigeria using a cross-sectional design. Usability was assessed using a questionnaire that included the System Usability Scale (SUS) and a feedback session. Results: The database included 924 foods, with up to 54 nutrients and 35 portion-size images allocated to foods. Sixty percent of the data were sourced from the 2019 West Africa Food Composition Table, 17% from back-of-pack labels of packaged foods, 14% from the 2017 Nigerian Food Composition Table, 5% from generated recipes and 4% from the published literature. Of the participants, 30% (n = 53) self-recorded their food intake, with a total of 1345 food and drink entries from both self- and interviewer-collected data. The mean SUS score of 74 (95% CI: 68,79) indicated good usability. The feedback showed that the tool was user-friendly, educational and included a variety of local foods. Conclusions: This new tool will enhance the dietary assessment of the Nigerian population. More work will expand coverage to include more foods from the region. Full article
(This article belongs to the Section Nutrition Methodology & Assessment)
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<p>Flow chart of myfood24 West Africa development. WAFCT, West Africa Food Composition Table; NFCT, Nigerian Food Composition Table; BOP, back-of-pack labels of packaged foods.</p>
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<p>Portion images of some foods in myfood24 West Africa Database. (<b>a</b>) Okra soup; same portion images were used for all “draw soups” such as <span class="html-italic">ogbono</span> soup. (<b>b</b>) Jollof rice; same images were assigned to all rice-based dishes such as fried rice, concoction rice and coconut rice. (<b>c</b>) Yam, tuber, combined cultivars, boiled. (<b>d</b>) Image for new boiled potato from myfood24 UK was used for boiled cocoyam as they are similar in appearance.</p>
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15 pages, 879 KiB  
Entry
Synthetic Fuels for Decarbonising UK Rural Transport
by Al-Amin Abba Dabo, Andrew Gough and F. Frank Alparslan
Encyclopedia 2024, 4(4), 1553-1567; https://doi.org/10.3390/encyclopedia4040101 - 15 Oct 2024
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Definition
Decarbonising transport is a crucial element of the UK’s strategy to achieve net-zero carbon emissions by 2050, as the transport sector is currently the largest contributor to the UK’s greenhouse gas emissions. Rural communities face distinct challenges in this effort due to their [...] Read more.
Decarbonising transport is a crucial element of the UK’s strategy to achieve net-zero carbon emissions by 2050, as the transport sector is currently the largest contributor to the UK’s greenhouse gas emissions. Rural communities face distinct challenges in this effort due to their reliance on internal combustion engines (ICEs) across vehicles and machinery essential for daily life, including farming equipment and private transport. While the upcoming ban on new petrol and diesel vehicles paves the way for the adoption of Electric Vehicles (EVs), this solution may not fully address the unique needs of rural areas where infrastructure limitations and specific mobility requirements pose significant barriers. In this context, synthetic fuels, produced using renewable energy sources, offer a potential alternative. These fuels can be used directly in existing internal combustion engines without requiring major modifications and have the added benefit of reducing overall greenhouse gas emissions by capturing CO2 during production. This entry explores the potential advantages of adopting synthetic fuels, particularly in rural areas, and examines how community-based buying cooperatives could support their wider use through bulk purchasing, cost reduction, and community empowerment. Full article
(This article belongs to the Section Social Sciences)
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<p>Net CO<sub>2</sub> impact (gramme CO<sub>2</sub> per gramme of fuel) of synthetic fuel production methods: Sabatier, biomass pyrolysis, and heavy oil upgrading (source: [<a href="#B35-encyclopedia-04-00101" class="html-bibr">35</a>,<a href="#B36-encyclopedia-04-00101" class="html-bibr">36</a>,<a href="#B37-encyclopedia-04-00101" class="html-bibr">37</a>,<a href="#B38-encyclopedia-04-00101" class="html-bibr">38</a>]).</p>
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<p>Applications of Synthetic Fuels in Rural Transport.</p>
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