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Search Results (1,803)

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28 pages, 3308 KiB  
Review
Current Challenges of Vaccination in Fish Health Management
by Avnish Kumar, Sushil Kumar Middha, Soumya Vettiyatil Menon, Biswaranjan Paital, Shyam Gokarn, Meghana Nelli, Rakshith Bangalore Rajanikanth, Harish Mani Chandra, Susithra Priyadarshni Mugunthan, Sanwar Mal Kantwa, Talambedu Usha, Akshaya Kumar Hati, Divyadharshini Venkatesan, Abira Rajendran, Tapas Ranjan Behera, Swarupa Venkatesamurthy and Dipak Kumar Sahoo
Animals 2024, 14(18), 2692; https://doi.org/10.3390/ani14182692 - 16 Sep 2024
Viewed by 351
Abstract
Vaccination is an essential method of immunological preventive care required for the health management of all animals, including fish. More particularly, immunization is necessary for in-land aquaculture to manage diseases in fish broodstocks and healthy seed production. According to the latest statistics in [...] Read more.
Vaccination is an essential method of immunological preventive care required for the health management of all animals, including fish. More particularly, immunization is necessary for in-land aquaculture to manage diseases in fish broodstocks and healthy seed production. According to the latest statistics in 2020, 90.3 million tons of capture fishery production was achieved from the aquaculture sector. Out of the above, 78.8 million tons were from marine water aquaculture sectors, and 11.5 million tons were from inland water aquaculture sectors. About a 4% decline in fish production was achieved in 2020 in comparison to 2018 from inland aquaculture sectors. On the other hand, the digestive protein content, healthy fats, and nutritional values of fish products are comparatively more affordable than in other meat sources. In 2014, about 10% of aquatic cultured animals were lost (costing global annual losses > USD 10 billion) due to infectious diseases. Therefore, vaccination in fish, especially in broodstocks, is one of the essential approaches to stop such losses in the aquaculture sector. Fish vaccines consist of whole-killed pathogens, protein subunits, recombinant proteins, DNA, or live-attenuated vaccines. Challenges persist in the adaption of vaccination in the aquaculture sector, the route of administration, the use of effective adjuvants, and, most importantly, the lack of effective results. The use of autogenous vaccines; vaccination via intramuscular, intraperitoneal, or oral routes; and, most importantly, adding vaccines in feed using top dressing methods or as a constituent in fish feed are now emerging. These methods will lower the risk of using antibiotics in cultured water by reducing environmental contamination. Full article
(This article belongs to the Special Issue Current Advances in Vaccines against Fish Viruses)
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Figure 1
<p>Management of fish health with multiple approaches. This panel depicts ecosystem-level management, which includes disease and environmental control measures.</p>
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<p>Vaccine classification based on their mode of action and their sources. This Figure is modified after Assefa and Abunna [<a href="#B21-animals-14-02692" class="html-bibr">21</a>].</p>
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<p>Schematic diagram for fish vaccine regulatory approval.</p>
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<p>Schematic representation of the steps involved in plant-based fish vaccine development.</p>
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<p>Control and prevention strategies for infectious diseases in fish [<a href="#B25-animals-14-02692" class="html-bibr">25</a>,<a href="#B183-animals-14-02692" class="html-bibr">183</a>]. Different approaches are used to maintain fish health, such as nano-based drugs/vaccines, injectable vaccines, probiotics, plant-based medicines, or edible vaccines.</p>
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14 pages, 965 KiB  
Article
Evaluation of Agronomic Traits, Total Phenolic Content, and Antioxidant Properties of Sesame Seeds of Different Colors and Origin
by Collins Yeboah Osei, Sookyeong Lee, Gi-An Lee, Sae Hyun Lee, Eunae Yoo, Jae-Eun Lee, Eun-Gyeong Kim and Tae-Jin Yang
Foods 2024, 13(18), 2932; https://doi.org/10.3390/foods13182932 - 16 Sep 2024
Viewed by 295
Abstract
Rising health concerns regarding chronic diseases call for exploring natural sources of antioxidants and factors that influence their activity. This study evaluated the diversity of 112 sesame germplasms from Africa and Asia based on ten agronomic traits (seven quantitative and three qualitative), two [...] Read more.
Rising health concerns regarding chronic diseases call for exploring natural sources of antioxidants and factors that influence their activity. This study evaluated the diversity of 112 sesame germplasms from Africa and Asia based on ten agronomic traits (seven quantitative and three qualitative), two antioxidant activities (ABTS and DPPH radical scavenging activities), and the content of one metabolite (TPC). TPC, DPPH, and ABTS were in the ranges of 4.98–87.88 µg GAE/mg DE, 3.97–46.23 µg AAE/mg DE, and 3.42–176.01 µg TE/mg DE, respectively. Statistical analyses revealed significant variations in agronomic traits, TPC, and antioxidant activities among the sesame germplasms (p < 0.05). Furthermore, the individual and interaction effects of seed color and the continent of origin on the levels of the quantitative traits, TPC, ABTS, and DPPH were analyzed, and the correlation among the traits was further evaluated. Diversity in TPC, ABTS, and DPPH was significantly associated with seed color and most of the quantitative agronomic traits (p < 0.05) but not with continent of origin. Principal component analysis revealed TPC, ABTS, DPPH, and five quantitative traits as the most discriminant traits. In general, six sesame accessions with high TPC and antioxidant activities (IT194356, IT170094, IT29971, IT185998, IT104246, and IT169623) as well as important agronomic traits were identified and, hence, could be used for developing improved sesame varieties. Full article
(This article belongs to the Special Issue Advances on Functional Foods with Antioxidant Bioactivity)
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<p>Heatmap of two-way hierarchical cluster analysis of sesame accessions based on continent, seed color, TPC, antioxidant activities, and quantitative agronomic traits. BLK: black, BRN: brown, LB: light brown, OLV: olive, WHT: white.</p>
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<p>Variable PCA biplot (<b>a</b>), score plot of sesame accessions according to continent (<b>b</b>) and seed colors (<b>c</b>), and hierarchical clustering principal component (HCPC) biplot based on quantitative traits, TPC, ABTS, and DPPH (<b>d</b>).</p>
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<p>Correlation matrix showing the relationship among quantitative agronomic traits, TPC, and antioxidant activities of sesame; ***, **, *: significant at 0.001, 0.01, and 0.05, respectively, ns: not significant.</p>
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22 pages, 3044 KiB  
Article
Occurrence and Distribution of Major Cassava Pests and Diseases in Cultivated Cassava Varieties in Western Kenya
by Everlyne N. Wosula, Rudolph R. Shirima, Massoud Amour, Vincent W. Woyengo, Bonface M. Otunga and James P. Legg
Viruses 2024, 16(9), 1469; https://doi.org/10.3390/v16091469 - 15 Sep 2024
Viewed by 289
Abstract
Cassava is an important food crop in western Kenya, yet its production is challenged by pests and diseases that require routine monitoring to guide development and deployment of control strategies. Field surveys were conducted in 2022 and 2023 to determine the prevalence, incidence [...] Read more.
Cassava is an important food crop in western Kenya, yet its production is challenged by pests and diseases that require routine monitoring to guide development and deployment of control strategies. Field surveys were conducted in 2022 and 2023 to determine the prevalence, incidence and severity of cassava mosaic disease (CMD) and cassava brown streak disease (CBSD), whitefly numbers and incidence of cassava green mite (CGM) in six counties of western Kenya. Details of the encountered cassava varieties were carefully recorded to determine the adoption of improved varieties. A total of 29 varieties were recorded, out of which 13 were improved, although the improved varieties were predominant in 60% of fields and the most widely grown variety was MM96/4271. The CMD incidence was higher in 2022 (26.4%) compared to 2023 (10.1%), although the proportion of CMD attributable to whitefly infection was greater (50.6%) in 2023 than in 2022 (18.0%). The CBSD incidence in 2022 was 6.4%, while in 2023 it was 4.1%. The CMD incidence was significantly lower (5.9%) for the improved varieties than it was for the local varieties (35.9%), although the CBSD incidence did not differ significantly between the improved (2.3%) and local varieties (9.7%). Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV) were both detected. Most infections were single CBSV infections (82.9%), followed by single UCBSV (34.3%) and coinfection with both viruses (16.7%). Whiteflies were more abundant in 2023, in which 28% of the fields had super-abundant populations of >100/plant, compared to 5% in 2022. KASP SNP genotyping designated 92.8% of the specimens as SSA-ECA for 2022, while it was 94.4% for 2023. The cassava green mite incidence was 65.4% in 2022 compared to 79.9% in 2023. This study demonstrates that cassava viruses, whiteflies and cassava green mites continue to be important constraints to cassava production in western Kenya, although the widespread cultivation of improved varieties is reducing the impact of cassava viruses. The more widespread application of high-quality seed delivery mechanisms could further enhance the management of these pests/diseases, coupled with wider application of IPM measures for whiteflies and mites. Full article
(This article belongs to the Special Issue Molecular Virus-Insect Interactions)
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Figure 1
<p>Geographic distribution of the top five cassava varieties cultivated in 2022 and 2023 in six counties of western Kenya.</p>
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<p>Geographic distribution of cassava mosaic disease (CMD) and cassava brown streak disease (CBSD) in 2022 (<b>A</b>,<b>B</b>) and 2023 (<b>C</b>,<b>D</b>) in relation to the <span class="html-italic">Bemisia tabaci</span> whitefly abundance across six counties in western Kenya.</p>
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<p>Geographic distribution of cassava-colonizing <span class="html-italic">Bemisia tabaci</span> whiteflies in counties surveyed in western Kenya based on mtCOI sequencing (2017 (<b>A</b>), 2022 (<b>B</b>) and 2023 (<b>C</b>) and KASP SNP genotyping 2017 (<b>D</b>)).</p>
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<p>Geographic distribution of the cassava green mite (CGM) incidence in 2022 (<b>A</b>) and 2023 (<b>B</b>) across six counties in western Kenya.</p>
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11 pages, 3493 KiB  
Article
Biophysical Studies of Amyloid-Binding Fluorophores to Tau AD Core Fibrils Formed without Cofactors
by Daniela P. Freitas, Joana Saavedra, Isabel Cardoso and Cláudio M. Gomes
Int. J. Mol. Sci. 2024, 25(18), 9946; https://doi.org/10.3390/ijms25189946 (registering DOI) - 15 Sep 2024
Viewed by 323
Abstract
Tau is an intrinsically disordered protein involved in several neurodegenerative diseases where a common hallmark is the appearance of tau aggregates in the brain. One common approach to elucidate the mechanisms behind the aggregation of tau has been to recapitulate in vitro the [...] Read more.
Tau is an intrinsically disordered protein involved in several neurodegenerative diseases where a common hallmark is the appearance of tau aggregates in the brain. One common approach to elucidate the mechanisms behind the aggregation of tau has been to recapitulate in vitro the self-assembly process in a fast and reproducible manner. While the seeding of tau aggregation is prompted by negatively charged cofactors, the obtained fibrils are morphologically distinct from those found in vivo. The Tau AD core fragment (TADC, tau 306–378) has emerged as a new model and potential solution for the cofactor-free in vitro aggregation of tau. Here, we use TADC to further study this process combining multiple amyloid-detecting fluorophores and fibril bioimaging. We confirmed by transmission electron microscopy that this fragment forms fibrils after quiescent incubation at 37 °C. We then employed a panel of eight amyloid-binding fluorophores to query the formed species by acquiring their emission spectra. The results obtained showed that nearly all dyes detect TADC self-assembled species. However, the successful monitoring of TADC aggregation kinetics was limited to three fluorophores (X-34, Bis-ANS, and pFTAA) which yielded sigmoidal curves but different aggregation half-times, hinting to different species being detected. Altogether, this study highlights the potential of using multiple extrinsic fluorescent probes, alone or in combination, as tools to further clarify mechanisms behind the aggregation of amyloidogenic proteins. Full article
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<p>Tau structure. Full-length 2N4R tau contains two N-terminal domains (in orange), followed by two proline-rich regions (in red), and four microtubule-binding repeats (R1, R2, R3, and R4), which comprise nearly the entire microtubule-binding domain of tau. Within these repeats, the PHF6*/PHF6 hexapeptides, highlighted above the R2 and R3 repeats, play a crucial role in tau aggregation [<a href="#B18-ijms-25-09946" class="html-bibr">18</a>,<a href="#B19-ijms-25-09946" class="html-bibr">19</a>]. A final pseudo-repeat, R’, also contributes to tau’s interaction with microtubules and is located in the C-terminal region [<a href="#B20-ijms-25-09946" class="html-bibr">20</a>]. The Tau AD core, which forms the structured core of tau fibrils in Alzheimer’s Disease [<a href="#B15-ijms-25-09946" class="html-bibr">15</a>], primarily involves the R3 and R4 repeats and includes the PHF6 peptide.</p>
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<p>Negative-stain TEM images of TADC heparin-free aggregates. Fibrillar species observed at 15 h (<b>a</b>) and 30 h (<b>b</b>) during the cofactor-free, quiescent aggregation of 100 µM TADC monomers. In panel (<b>a</b>), the inset provides a zoomed view of the fibril marked with a white asterisk, showing how the measurements for apparent diameter (black arrowheads) were taken. White arrowheads point to potential fibril torsion regions, though these cannot be precisely identified in this study. (<b>c</b>) Measurement of apparent fibril diameters at 15 h (11.9 ± 3.4 nm, n = 82) and 30 h (12.4 ± 4.6 nm, n = 50). All measurements are reported as mean ± standard deviation. Globular, amorphous species were observed throughout the reaction, as shown in (<b>d</b>) for both 15 h and 30 h samples.</p>
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<p>Emission spectra of fluorescent probes in the presence and absence of TADC aggregates. In total, 15 µM of TADC monomers was incubated for 30 h at 37 °C under quiescent conditions without inducers. Each dye was added to the endpoint samples, and spectra were obtained using the λ<sub>ex</sub> specified in <a href="#ijms-25-09946-t001" class="html-table">Table 1</a>. Light blue spectra represent the emission of the probes alone, while dark blue spectra indicate the emission obtained by the probe in the presence of TADC aggregates. All spectra represent the average of triplicate measurements (line), with the standard deviation shown as a shaded area.</p>
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<p>Kinetics of TADC cofactor-free aggregation. The aggregation kinetics of 15 µM of TADC monomers without inducers was monitored using X-34 (<b>left</b>), Bis-ANS (<b>middle</b>), and pFTAA (<b>right</b>), which yielded sigmoidal curves typical of fibril aggregation processes, albeit with different reaction half-times (t<sub>1/2</sub>). All curves correspond to the average of at least three replicates; ±standard deviation.</p>
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17 pages, 4451 KiB  
Article
Unfolding Mechanism and Fibril Formation Propensity of Human Prion Protein in the Presence of Molecular Crowding Agents
by Manoj Madheswaran, Nataliia Ventserova, Gianluca D’Abrosca, Giulia Salzano, Luigi Celauro, Federico Angelo Cazzaniga, Carla Isernia, Gaetano Malgieri, Fabio Moda, Luigi Russo, Giuseppe Legname and Roberto Fattorusso
Int. J. Mol. Sci. 2024, 25(18), 9916; https://doi.org/10.3390/ijms25189916 (registering DOI) - 13 Sep 2024
Viewed by 307
Abstract
The pathological process of prion diseases implicates that the normal physiological cellular prion protein (PrPC) converts into misfolded abnormal scrapie prion (PrPSc) through post-translational modifications that increase β-sheet conformation. We recently demonstrated that HuPrP(90–231) thermal unfolding is partially irreversible [...] Read more.
The pathological process of prion diseases implicates that the normal physiological cellular prion protein (PrPC) converts into misfolded abnormal scrapie prion (PrPSc) through post-translational modifications that increase β-sheet conformation. We recently demonstrated that HuPrP(90–231) thermal unfolding is partially irreversible and characterized by an intermediate state (β-PrPI), which has been revealed to be involved in the initial stages of PrPC fibrillation, with a seeding activity comparable to that of human infectious prions. In this study, we report the thermal unfolding characterization, in cell-mimicking conditions, of the truncated (HuPrP(90–231)) and full-length (HuPrP(23–231)) human prion protein by means of CD and NMR spectroscopy, revealing that HuPrP(90–231) thermal unfolding is characterized by two successive transitions, as in buffer solution. The amyloidogenic propensity of HuPrP(90–231) under crowded conditions has also been investigated. Our findings show that although the prion intermediate, structurally very similar to β-PrPI, forms at a lower temperature compared to when it is dissolved in buffer solution, in cell-mimicking conditions, the formation of prion fibrils requires a longer incubation time, outlining how molecular crowding influences both the equilibrium states of PrP and its kinetic pathways of folding and aggregation. Full article
(This article belongs to the Special Issue Structure, Function and Dynamics in Proteins: 2nd Edition)
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Figure 1
<p>(<b>A</b>) Far-UV CD spectra of HuPrP(23–231) and HuPrP(90–231) at pH 5.5. Experiments were carried out in presence of Ficoll-70 (150 g/L) at 25 °C (Blue: Ficoll-70, yellow: HuPrP(23–231), orange: HuPrP(90–231)). (<b>B</b>) Far-UV CD spectra of HuPrP(23–231) and HuPrP(90–231) at pH 6.8. Experiments were carried out in in presence of Ficoll-70 (150 g/L) at 25 °C (Blue: Ficoll-70 curve, orange: HuPrP(90–231), yellow: HuPrP(23–231)).</p>
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<p>CD thermal unfolding of HuPrP proteins in the presence of Ficoll-70. Thermal melt plots are a function of temperature. Measurements were performed at pH 5.5 and 6.8 at different temperatures ranging from 5 °C to 90 °C. Data were fitted according to two- and three-state models. HuPrP(90–231) at pH 5.5 (<b>A</b>), HuPrP(23–231) at pH 5.5 (<b>B</b>), HuPrP(90–231) at pH 6.8 (<b>C</b>), and HuPrP(23–231) at pH 6.8 (<b>D</b>).</p>
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<p><sup>1</sup>H-<sup>15</sup>N HSQC spectra for HuPrP(90–231). Overlay of <sup>1</sup>H-<sup>15</sup>N HSQC spectra of HuPrP(90–231) acquired in dilute buffer (red), in the presence of 150 g/L of Ficoll-70 (green), and in the presence of 50 g/L (blue) of Ficoll-70 acquired on 600 MHz spectrometer at 25 °C and pH 5.5.</p>
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<p>Chemical shift correlation plots in the different conditions (<b>A</b>) The <sup>1</sup>H<sub>N</sub> chemical shift correlation plot of HuPrP(90–231) in two different concentrations of Ficoll-70 (50 g/L against 150 g/L). (<b>B</b>) The <sup>1</sup>H<sub>N</sub> chemical shift correlation plot of HuPrP(90–231) in solution against Ficoll-70 150 g/L. (<b>C</b>) The <sup>15</sup>N chemical shift correlation plot of HuPrP(90–231) in solution against Ficoll-70 150 g/L. (<b>D</b>) The <sup>13</sup>Cα chemical shift correlation plot of HuPrP(90–231) in solution against Ficoll-70 150 g/L.</p>
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<p>NMR thermal unfolding. (<b>A</b>–<b>D</b>) <sup>1</sup>H-<sup>15</sup>N HSQCs were used to monitor the thermal unfolding of HuPrP(90–231) in the presence of 150 g/L Ficoll-70 acquired at pH 5.5 on a 600 MHz spectrometer equipped with a cryoprobe.</p>
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<p>“Atom-by-atom” unfolding behavior of HuPrP(90–231). Ribbon drawing representation of the HuPrP(90–231) in both Ficoll-70 concentrations: (<b>A</b>) 150 g/L, (<b>B</b>) 50 g/L. NMR structure showing the thermal stability estimated from the <sup>1</sup>H<sub>N</sub> chemical shift variations mapped on their corresponding atoms. The color displayed for each atom corresponds to the T<sub>m</sub>. Balls with similar colors have similar T<sub>m</sub>s. The insets show the distribution of melting temperature.</p>
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<p>The intermediate chemical shift and secondary chemical shift comparison in different environments. (<b>A</b>) <sup>1</sup>H<sub>N</sub> and (<b>B</b>) <sup>15</sup>N chemical shift correlation plot of HuPrP(90–231) in Ficoll-70 50 g/L obtained at 50 °C against HuPrP(90–231) in dilute solution obtained at 61 °C [<a href="#B33-ijms-25-09916" class="html-bibr">33</a>]. (<b>C</b>) <sup>1</sup>H<sub>N</sub> and (<b>D</b>) <sup>15</sup>N chemical shift correlation plot of HuPrP(90–231) in Ficoll-70 150 g/L obtained at 50 °C against HuPrP(90–231) in dilute solution obtained at 61 °C [<a href="#B33-ijms-25-09916" class="html-bibr">33</a>].</p>
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<p>Role of the β-PrPI intermediate state in amyloid fibril formation and in prion protein conversion in different environments. (<b>A</b>) Average ThT fluorescence intensity was plotted against time (T = 50 °C) for HuPrP(90–231): in dilute solution (light blue dotted line), Ficoll-70 50 g/L concentration (dark blue line), Ficoll-70 at 150 g/L (red line). Insert reports the control experiment containing ThT + Ficoll-70 150 g/L. (<b>B</b>) Aggregation of the reaction substrate: HuPrP(90–231) with a longer lag-phase and subsequent self-assembly. Insert reports the control experiment containing ThT + Ficoll-70 50 g/L.</p>
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14 pages, 4052 KiB  
Article
Anti-Inflammatory Effects of the Combined Treatment of Resveratrol- and Protopanaxadiol-Enriched Rice Seed Extract on Lipopolysaccharide-Stimulated RAW264.7 Cells
by Chaiwat Monmai and So-Hyeon Baek
Molecules 2024, 29(18), 4343; https://doi.org/10.3390/molecules29184343 - 13 Sep 2024
Viewed by 240
Abstract
The overproduction of proinflammatory cytokines triggers a variety of diseases. Protopanaxadiol (PPD) and resveratrol are naturally found in plants such as ginseng and have potential anti-inflammatory properties, and resveratrol- and PPD-enriched rice seeds have been previously successfully generated. Herein, the synergistic anti-inflammatory activities [...] Read more.
The overproduction of proinflammatory cytokines triggers a variety of diseases. Protopanaxadiol (PPD) and resveratrol are naturally found in plants such as ginseng and have potential anti-inflammatory properties, and resveratrol- and PPD-enriched rice seeds have been previously successfully generated. Herein, the synergistic anti-inflammatory activities of extracts of these enriched seeds were assessed in lipopolysaccharide (LPS)-stimulated RAW264.7 cells. In comparison with treatment using extract prepared from PPD-producing transgenic rice (DJ-PPD) alone, cotreatment with DJ526 and DJ-PPD (TR_3) markedly enhanced the anti-inflammatory activities at a similar (compared to DJ526) or higher (compared to DJ-PPD) level. Cotreatment with DJ526 and DJ-PPD markedly inhibited the activation of nuclear factor kappa B (NF-κB) and mitogen-activated protein kinase (MAPK) signaling pathways. Thus, DJ526 and DJ-PPD in combination suppressed the expression of phosphorylated (p)-NF-κB p65, p-p38 MAPK, and p-ERK 1/2. Cotreatment with DJ526 and DJ-PPD downregulated the expression of proinflammatory cytokines (IL-1β, IL-6, and TNF-α), LPS receptor (toll-like receptor-4, TLR-4), proinflammatory mediators (nitric oxide and PGE2), and arachidonic acid pathway critical enzyme (COX-2). These findings demonstrate the synergistic potential anti-inflammatory activities of resveratrol- and PPD-enriched rice seed extract. Full article
(This article belongs to the Special Issue Bioactive Phenolic and Polyphenolic Compounds, Volume III)
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Graphical abstract

Graphical abstract
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<p>Effect of resveratrol- and PPD-enriched rice seed extracts on the viability of LPS-stimulated RAW264.7 cells. The concentrations of DMSO, aspirin, and treatments (rice seed extract and mixture) were 0.1%, 200 ng/mL, and 100 µg/mL, respectively.</p>
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<p>Effect of resveratrol- and PPD-enriched rice seed extracts (DJ526 and DJ-PPD, respectively) on the NO production in LPS-stimulated RAW264.7 cells. The concentrations of DMSO, aspirin, and treatments (rice seed extract and mixture) were 0.1%, 200 ng/mL, and 100 µg/mL, respectively. The significant differences in NO production are presented as lowercase letters at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of resveratrol- and PPD-enriched rice seed extracts (DJ526 and DJ-PPD, respectively) on the immune-related gene expression in LPS-stimulated RAW26.7 cells. The effect on (<b>a</b>) <span class="html-italic">IL-1β</span>, (<b>b</b>) <span class="html-italic">IL-6</span>, (<b>c</b>) <span class="html-italic">TNF-α</span>, (<b>d</b>) <span class="html-italic">TLR-4</span>, (<b>e</b>) <span class="html-italic">iNOS</span>, and (<b>f</b>) <span class="html-italic">COX-2</span> expression. The concentrations of DMSO, aspirin, and treatments (rice seed extract and mixture) were 0.1%, 200 ng/mL, and 100 µg/mL, respectively. The significant differences in gene expression levels are presented as lowercase letters at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of resveratrol- and PPD-enriched rice seed extracts (DJ526 and DJ-PPD, respectively) on PGE<sub>2</sub> production in LPS-stimulated RAW264.7 cells. The concentrations of DMSO, aspirin, and treatments (rice seed extract and mixture) were 0.1%, 200 ng/mL, and 100 µg/mL, respectively. The significant differences in PGE<sub>2</sub> production are presented as lowercase letters at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of resveratrol- and PPD-enriched rice seed extracts (DJ526 and DJ-PPD, respectively) on the expression of immune-associated proteins in LPS-stimulated RAW264.7 cells. (<b>a</b>) Representative of blot analysis, (<b>b</b>) densitometric analyses of p-p38 MAPK protein expression, (<b>c</b>) densitometric analyses of p-ERK 1/2 protein expression, and (<b>d</b>) densitometric analyses of p-NF-κB p65 protein expression. The concentrations of DMSO, aspirin, and treatments (rice seed extract and mixture) were 0.1%, 200 ng/mL, and 100 µg/mL, respectively. The significant differences in protein expression are presented as lowercase letters at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>The calibration curve of NaNO<sub>2</sub> (0.00–100.00 µM).</p>
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<p>Standard curve of PGE<sub>2</sub> production over the range of 39.0625–2500 pg. OD = optical density.</p>
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15 pages, 1156 KiB  
Article
The Contribution of Cognitive Control Networks in Word Selection Processing in Parkinson’s Disease: Novel Insights from a Functional Connectivity Study
by Sonia Di Tella, Matteo De Marco, Isabella Anzuino, Davide Quaranta, Francesca Baglio and Maria Caterina Silveri
Brain Sci. 2024, 14(9), 913; https://doi.org/10.3390/brainsci14090913 - 11 Sep 2024
Viewed by 365
Abstract
Parkinson’s disease (PD) patients are impaired in word production when the word has to be selected among competing alternatives requiring higher attentional resources. In PD, word selection processes are correlated with the structural integrity of the inferior frontal gyrus, which is critical for [...] Read more.
Parkinson’s disease (PD) patients are impaired in word production when the word has to be selected among competing alternatives requiring higher attentional resources. In PD, word selection processes are correlated with the structural integrity of the inferior frontal gyrus, which is critical for response selection, and the uncinate fasciculus, which is necessary for processing lexical information. In early PD, we investigated the role of the main cognitive large-scale networks, namely the salience network (SN), the central executive networks (CENs), and the default mode network (DMN), in word selection. Eighteen PD patients and sixteen healthy controls were required to derive nouns from verbs or generate verbs from nouns. Participants also underwent a resting-state functional MRI. Functional connectivity (FC) was examined using independent component analysis. Functional seeds for the SN, CENs, and DMN were defined as spheres, centered at the local activation maximum. Correlations were calculated between the FC of each functional seed and word production. A significant association between SN connectivity and task performance and, with less evidence, between CEN connectivity and the task requiring selection among a larger number of competitors, emerged in the PD group. These findings suggest the involvement of the SN and CEN in word selection in early PD, supporting the hypothesis of impaired executive control. Full article
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<p>Extracted resting-state functional cognitive control network maps (one-sample <span class="html-italic">t</span>-tests significant at FWE corrected <span class="html-italic">p</span> &lt; 0.05 at a cluster level and <span class="html-italic">p</span> &lt; 0.00001 at uncorrected set level) and ROIs defined as 4 mm radius spheres in the local maxima.</p>
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<p>Scatterplots represent the association between SN ROI connectivity and overall task performance (W_production) expressed in terms of accuracy and response times after logarithmic transformation (ln).</p>
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18 pages, 5402 KiB  
Article
Enhancing Growth in Vigna radiata through the Inhibition of Charcoal Rot Disease: A Strategic Approach Using Plant Growth-Promoting Rhizobacteria
by Imran Khan, Sahar Ghulam Mohyuddin, Sohail, Shah Zaman, Muhammad Qadir, Juxian Guo and Guihua Li
Microorganisms 2024, 12(9), 1852; https://doi.org/10.3390/microorganisms12091852 - 6 Sep 2024
Viewed by 447
Abstract
Macrophomina phaseolina is a vital seed and soil-borne phytopathogen responsible for substantial crop yield losses. Although various methods exist for managing soil-borne pathogens, such as agronomic practices, chemical treatments, and varietal tolerance, biological control utilizing plant growth-promoting rhizobacteria (PGPR) or their secondary metabolites [...] Read more.
Macrophomina phaseolina is a vital seed and soil-borne phytopathogen responsible for substantial crop yield losses. Although various methods exist for managing soil-borne pathogens, such as agronomic practices, chemical treatments, and varietal tolerance, biological control utilizing plant growth-promoting rhizobacteria (PGPR) or their secondary metabolites presents promising avenues. In this study, a screening of 150 isolates from the rhizosphere of Vigna radiata L. was conducted to identify strains capable of promoting host growth and controlling charcoal rot disease. Among the tested isolates, only 15 strains demonstrated the ability to produce plant growth-related metabolites, including indole acetic acid, hydrogen cyanide, ammonia, and lytic enzymes, and solubilize inorganic phosphate. Subsequently, these potent strains were evaluated for their antifungal activity against Macrophomina phaseolina in vitro. Three strains, namely MRP-7 (58% growth inhibition), MRP-12 (55% growth inhibition), and MRP-8 (44% growth inhibition), exhibited the highest percent growth inhibition (PGI.). Furthermore, a pot experiment demonstrated that the selected strains acted as effective growth promoters and ROS (reactive oxygen species) scavengers, and served as potential biocontrol agents, significantly reducing the incidence of charcoal rot disease and improving various agronomic attributes of the host plant. These findings highlight the potential of these strains to be utilized as biofertilizers and biocontrol agents for sustainable agricultural practices. Full article
(This article belongs to the Special Issue Insights into Plant–Soil–Microbe Interactions)
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<p>Screening of selected strain for (<b>a</b>) IAA, (<b>b</b>) HCN, (<b>c</b>,<b>d</b>) phosphate solubilization, (<b>e</b>) ammonia, (<b>f</b>) catalase, (<b>g</b>) protease, and (<b>h</b>) amylase production.</p>
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<p>Screening of selected strains for (<b>a</b>) % inhibition of fungal strain, (<b>b</b>) fungal culture, and (<b>c</b>) dual culture of potent strains with fungus.</p>
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<p>Effect of PGPR on (<b>a</b>) root shoot length, (<b>b</b>) No. of nodules, (<b>c</b>) seeds per pod, and (<b>d</b>) No. of pods per plant on the host plants.</p>
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<p>Effect of PGPR and <span class="html-italic">M. phaseolina</span> on (<b>a</b>) root and shoot length, (<b>b</b>) No. of seeds and pods of the host. (<b>c</b>) the total chlorophyll contents. Data are mean of replicate with SE± and letters represent the significant difference (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effect of PGPR and <span class="html-italic">M. phaseolina</span> on (<b>a</b>) catalases, (<b>b</b>) ascorbate peroxidases, (<b>c</b>) peroxidases, (<b>d</b>) superoxide dismutase, and (<b>e</b>) DPPH radical scavenging activity of the host. Data are mean of replicate with SE± and letters represent the significant difference (<span class="html-italic">p</span> &lt; 0.05).</p>
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11 pages, 1616 KiB  
Article
Temporary Immersion Culture: A Potential In Vitro Culture Method for the Clonal Propagation of Coconut
by Zhihua Mu, Zhiying Li, Amirhossein Bazrafshan, Sundaravelpandian Kalaipandian, Eveline Yee Yan Kong, Julianne Biddle, Naga Prafulla Chandrika Nulu and Steve Adkins
Horticulturae 2024, 10(9), 946; https://doi.org/10.3390/horticulturae10090946 - 5 Sep 2024
Viewed by 388
Abstract
As one of the most important members of the palm family, coconut (Cocos nucifera L.) currently faces a substantial gap between demand and production. Current plantings of this crop are aging, and these traditional varieties are susceptible to several devastating pests and [...] Read more.
As one of the most important members of the palm family, coconut (Cocos nucifera L.) currently faces a substantial gap between demand and production. Current plantings of this crop are aging, and these traditional varieties are susceptible to several devastating pests and diseases. Consequently, there is an urgent need to replant and expand coconut lands with new, genetically superior varieties. Such replanting cannot be met through the conventional method of seed nut planting, and tissue culture has emerged as a likely solution to address this problem. However, due to certain technical barriers, elevated costs, and a need for improved efficiency, the development of automated and highly efficient tissue culture techniques is yet to be developed. The present research explores the potential of an in vitro temporary immersion system (TIS) to improve the production of somatic embryogenic callus for plantlet regeneration. Results indicated that, in comparison to the conventional agar-based method used to produce coconut somatic embryogenic callus, the TIS method significantly enhanced embryogenic callus production. The optimal biomass of callus for inoculating the TIS was determined to be 0.2 g in each 900 mL vessel and the most favorable embryogenic developmental stage for employing TIS was the globular stage of embryo development. The most effective immersion time to give the highest yield of embryogenic callus was 5 min every 6 h. This foundational research demonstrates that a TIS step is likely to be important to rapidly produce, on a large scale, coconut plantlets to meet the escalating demand for materials for the replanting of coconut lands. Full article
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<p>The temporary immersion system installed on a shelf in an incubator providing conditions of 27 ± 2 °C and 50 μmol m<sup>−2</sup> s<sup>−1</sup> cool-white LED light (<b>A</b>). The three categories of somatic embryogenic material employed in the TIS investigation including callus exhibiting somatic embryogenic structures at the globular stage of development (<b>B</b>), mature somatic embryos in the early stages of germination (<b>C</b>), and clusters of germinated somatic embryos (<b>D</b>).</p>
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<p>A comparison of somatic embryogenic callus performance when introduced into the temporary immersion system at one of three different developmental stages (S1: consisting of clusters of somatic embryogenic callus at the globular stage of development; S2: consisting of clusters of germinating somatic embryos; S3: consisting of clusters of coleoptilar-stage SEs; and C: a control, consisting of somatic embryogenic callus at the globular embryo stage of development on a solid medium). This comparison was based on three metrics determined after 6 weeks of incubation: (<b>A</b>) the fresh weight gain of the cultured materials, (<b>B</b>) the increase in the number of somatic structures generated, and (<b>C</b>) the survival rate as assessed by the percentage of non-necrotic tissue per culture. Bars represent two standard errors of the mean. Significant differences within each dataset are denoted by different letters positioned above the bars.</p>
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<p>A comparison of somatic embryogenic callus performance when introduced into the temporary immersion system at one of four different biomasses (T1: biomass of 2 g; T2: a biomass of 1 g; T3: a biomass of 0.5 g; and T4: a biomass of 0.2 g). This comparison was based on three metrics determined after 6 weeks of incubation: (<b>A</b>) the fresh weight gain of the cultured materials, (<b>B</b>) the increase in the number of somatic structures generated, and (<b>C</b>) the survival rate as assessed by the percentage of non-necrotic tissue per culture. Bars represent two standard errors of the mean. Significant differences within each dataset are denoted by different letters positioned above the bars.</p>
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<p>A comparison of somatic embryogenic callus performance at the globular stage of development and introduced into the RITA temporary immersion system at a biomass of 0.2 g. Two nutrient immersion times (3 or 5 min), applied at one of four different time intervals (3, 6, 12 or 24 h) were used. This comparison was based on four features determined after 6 weeks of incubation: (<b>A</b>) the fresh weight of the cultured materials, (<b>B</b>) the number of somatic structures generated, (<b>C</b>) the percentage of non-necrotic tissue per culture, and (<b>D</b>) the percentage of culture vitrification. Bars represent two standard errors of the mean. Significant differences within each dataset are denoted by different letters positioned above the bars.</p>
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14 pages, 2783 KiB  
Article
The Effects of Rice Bran on Neuroinflammation and Gut Microbiota in Ovariectomized Mice Fed a Drink with Fructose
by Yu-Wen Chao, Yu-Tang Tung, Suh-Ching Yang, Hitoshi Shirakawa, Li-Han Su, Pei-Yu Loe and Wan-Chun Chiu
Nutrients 2024, 16(17), 2980; https://doi.org/10.3390/nu16172980 - 4 Sep 2024
Viewed by 692
Abstract
Rice bran, which is abundant in dietary fiber and phytochemicals, provides multiple health benefits. Nonetheless, its effects on neuroinflammation and gut microbiota in postmenopausal conditions are still not well understood. This study investigated the effects of rice bran and/or tea seed oil supplementation [...] Read more.
Rice bran, which is abundant in dietary fiber and phytochemicals, provides multiple health benefits. Nonetheless, its effects on neuroinflammation and gut microbiota in postmenopausal conditions are still not well understood. This study investigated the effects of rice bran and/or tea seed oil supplementation in d-galactose-injected ovariectomized (OVX) old mice fed a fructose drink. The combination of d-galactose injection, ovariectomy, and fructose drink administration creates a comprehensive model that simulates aging in females under multiple metabolic stressors, including oxidative stress, estrogen deficiency, and high-sugar diets, and allows the study of their combined impact on metabolic disorders and related diseases. Eight-week-old and 6–8-month-old female C57BL/6 mice were used. The mice were divided into six groups: a sham + young mice, a sham + old mice, an OVX + soybean oil, an OVX + soybean oil with rice bran, an OVX + tea seed oil (TO), and an OVX + TO with rice bran diet group. The OVX groups were subcutaneously injected with d-galactose (100 mg/kg/day) and received a 15% (v/v) fructose drink. The rice bran and tea seed oil supplementation formed 10% of the diet (w/w). The results showed that the rice bran with TO diet increased the number of short-chain fatty acid (SCFA)-producing Clostridia and reduced the number of endotoxin-producing Tannerellaceae, which mitigated imbalances in the gut–liver–brain axis. Rice bran supplementation reduced the relative weight of the liver, levels of hepatic triglycerides and total cholesterol; aspartate transaminase and alanine aminotransferase activity; brain levels of proinflammatory cytokines, including interleukin-1β and tumor necrosis factor-α; and plasma 8-hydroxy-2-deoxyguanosine. This study concludes that rice bran inhibits hepatic fat accumulation, which mitigates peripheral metaflammation and oxidative damage and reduces neuroinflammation in the brain. Full article
(This article belongs to the Special Issue Dietary Fiber, Gut Microbiota and Metabolic Disorder)
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<p>Effects of rice bran and tea seed oil supplementation on body and uterine weight. (<b>A</b>) Initial body weight, (<b>B</b>) final body weight, (<b>C</b>) body weight change during the experiment, (<b>D</b>) relative uterine weight, (<b>E</b>) fasting glucose, (<b>F</b>) insulin, and (<b>G</b>) HOMA-IR index. HOMA-IR: homeostatic model assessment for insulin resistance; SY: sham + young mice; SO: sham + old mice; OS: OVX mice + soybean oil diet; OSR: OVX mice + soybean oil with rice bran diet; OT: OVX mice + tea seed oil diet; OTR: OVX + tea seed oil with rice bran diet; OVX: ovariectomized. Values are presented as the mean ± SEM (<span class="html-italic">n</span> = 8). Asterisks (*) indicate significant differences between the SO or OS group compared with the SY group. Different letters indicate significant differences between the OVX groups.</p>
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<p>Effects of rice bran and tea seed oil supplementation on lipid levels and liver function. Plasma (<b>A</b>) TG and (<b>B</b>) TC and hepatic (<b>C</b>) TG and (<b>D</b>) TC levels; (<b>E</b>) relative liver weight; and (<b>F</b>) AST and (<b>G</b>) ALT activities. SY: sham + young mice; SO: sham + old mice; OS: OVX mice + soybean oil diet; OSR: OVX mice + soybean oil with rice bran diet; OT: OVX mice + tea seed oil diet; OTR: OVX mice + tea seed oil with rice bran diet; TG: triglyceride; TC: total cholesterol; AST: aspartate transaminase; ALT: alanine transaminase; OVX: ovariectomized. Values are presented as the mean ± SEM (<span class="html-italic">n</span> = 8). Asterisks (*) indicate significant differences between the SO or OS group compared with the SY group. Different letters indicate significant differences between the OVX groups.</p>
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<p>Effects of rice bran and tea seed oil supplementation on the (<b>A</b>) concentration of 8-OHdG in plasma and the levels of (<b>B</b>) IL-1β, (<b>C</b>) IL-6, and (<b>D</b>) TNF-α in the frontal cortex of the brain. SY: sham + young mice; SO: sham + old mice; OS: OVX mice + soybean oil diet; OSR: OVX mice + soybean oil with rice bran diet; OT: OVX mice + tea seed oil diet; OTR: OVX mice + tea seed oil with rice bran diet; 8-OHdG: 8-hydroxy-2-deoxyguanosine; OVX: ovariectomized; IL: interleukin; TNF-α: tumor necrosis factor-α. Values are presented as the mean ± SEM (<span class="html-italic">n</span> = 6–7). Asterisks (*) indicate significant differences between the SO or OS group compared with the SY group. Different letters indicate significant differences between the OVX groups.</p>
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<p>Effects of rice bran and tea seed oil supplementation on cognitive performance in the Morris water maze. (<b>A</b>) Escape latency during the acquisition trial and the (<b>B</b>) time spent and (<b>C</b>) path length in the target quadrant during the probe trial after the platform removal. SY: sham + young mice; SO: sham + old mice; OS: OVX mice + soybean oil diet; OSR: OVX mice + soybean oil with rice bran diet; OT: OVX mice + tea seed oil diet; OTR: OVX mice + tea seed oil with rice bran diet; OVX: ovariectomized. Values are presented as the mean ± SEM (<span class="html-italic">n</span> =6–7). Asterisks (*) indicate significant differences between the SO or OS group compared with the SY group.</p>
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<p>Effects of rice bran and tea seed oil supplementation on gut microbial composition and short-chain fatty acid levels. (<b>A</b>) Alpha diversity of the gut microbiota. (<b>B</b>) The relative abundance of gut microbiota at the family level. (<b>C</b>) Greatest differences in the gut microbiota between the different groups. Only taxa with a significant LDA threshold value of &gt;3 are shown. (<b>D</b>) Relative abundance of <span class="html-italic">c_Clostridia</span> and <span class="html-italic">f_Tannerellaceae</span>. (<b>E</b>) Short-chain fatty acids (acetate, propionate, and butyrate). (<b>F</b>) The correlation between butyrate and <span class="html-italic">Clostridia</span> and <span class="html-italic">Tannerellaceae</span>. LDA: linear discriminant analysis; SY: sham + young mice; SO: sham + old mice; OS: OVX mice + soybean oil diet; OSR: OVX mice + soybean oil with rice bran diet; OT: OVX mice + tea seed oil diet; OTR: OVX mice + tea seed oil with rice bran diet. Values are presented as the mean ± SEM (<span class="html-italic">n</span> = 5). Asterisks (*) indicate significant differences between the SO or OS group compared with the SY group. Different letters indicate significant differences between the OVX groups.</p>
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<p>Effects of rice bran and tea seed oil supplementation on gut microbial composition and short-chain fatty acid levels. (<b>A</b>) Alpha diversity of the gut microbiota. (<b>B</b>) The relative abundance of gut microbiota at the family level. (<b>C</b>) Greatest differences in the gut microbiota between the different groups. Only taxa with a significant LDA threshold value of &gt;3 are shown. (<b>D</b>) Relative abundance of <span class="html-italic">c_Clostridia</span> and <span class="html-italic">f_Tannerellaceae</span>. (<b>E</b>) Short-chain fatty acids (acetate, propionate, and butyrate). (<b>F</b>) The correlation between butyrate and <span class="html-italic">Clostridia</span> and <span class="html-italic">Tannerellaceae</span>. LDA: linear discriminant analysis; SY: sham + young mice; SO: sham + old mice; OS: OVX mice + soybean oil diet; OSR: OVX mice + soybean oil with rice bran diet; OT: OVX mice + tea seed oil diet; OTR: OVX mice + tea seed oil with rice bran diet. Values are presented as the mean ± SEM (<span class="html-italic">n</span> = 5). Asterisks (*) indicate significant differences between the SO or OS group compared with the SY group. Different letters indicate significant differences between the OVX groups.</p>
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<p>Heatmap of linear regression for biomarkers of the brain and liver with specific gut microbiota. IL: interleukin; TNF-α: tumor necrosis factor-α; ALT: alanine transaminase; AST: aspartate transaminase; TC: total cholesterol; TG: triglyceride. Colors were assigned according to the distribution of the Pearson correlation coefficient: red and blue represent positive and negative correlations, respectively. * <span class="html-italic">p</span> &lt; 0.05, significant correlations.</p>
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12 pages, 1322 KiB  
Article
Differences in Grey Matter Concentrations and Functional Connectivity between Young Carriers and Non-Carriers of the APOE ε4 Genotype
by Carlos Muñoz-Neira, Jianmin Zeng, Ludmila Kucikova, Weijie Huang, Xiong Xiong, Graciela Muniz-Terrera, Craig Ritchie, John T. O’Brien and Li Su
J. Clin. Med. 2024, 13(17), 5228; https://doi.org/10.3390/jcm13175228 - 3 Sep 2024
Viewed by 764
Abstract
Background: The pathophysiology of Alzheimer’s disease (AD) may begin developing years or even decades prior to the manifestation of its first symptoms. The APOE ε4 genotype is a prominent genetic risk for AD that has been found to be associated with brain [...] Read more.
Background: The pathophysiology of Alzheimer’s disease (AD) may begin developing years or even decades prior to the manifestation of its first symptoms. The APOE ε4 genotype is a prominent genetic risk for AD that has been found to be associated with brain changes across the lifespan since early adulthood. Thus, studying brain changes that may occur in young adults with an APOE ε4 status is highly relevant. Objective: Examine potential differences in grey matter (GM) and functional connectivity (FC) in brains of cognitively healthy young APOE ε4 carriers and non-carriers, denoted here as ε4(+) and ε4(−), respectively. Methods: Three Tesla magnetic resonance imaging (MRI) brain scans were acquired from cognitively healthy young participants aged approximately 20 years (n = 151). Voxel-based morphometry (VBM) analysis was employed to identify potential structural differences in GM between ε4(+) and ε4(−). In a subsequent seed-based connectivity (SBC) analysis, brain regions that structurally differed in the VBM analysis were considered as seeds and correlated with all the remaining voxels across the brains to then measure the differences in FC between groups. Results: The VBM analysis suggested that ε4(+) (n = 28) had greater GM densities relative to ε4(−) (n = 123) in the left hippocampus and the left posterior insula (puncorr < 0.001). However, the effect did not survive the correction for multiple comparisons, suggesting minimal structural differences in this age range. In contrast, the SBC analysis indicated that ε4(+) exhibited significantly decreased FC between the left hippocampus and areas of the left middle temporal gyrus (n = 27) compared to ε4(−) (n = 102). These results remained significant after multiple comparisons (pFDR < 0.05). Lastly, no statistically significant differences in FC between groups were observed for the left insular seed (pFDR > 0.05). Discussion: These results suggest early structural and functional brain changes associated with the APOE ε4 genotype on young adults. Yet, they must be cautiously interpreted and contrasted with both older adults with genetic risk for AD and patients diagnosed with AD. Full article
(This article belongs to the Special Issue Recent Studies in Brain Imaging for Neurocognitive Disorders)
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<p>Structural differences between APOE ε4 carrier and APOE ε4 non-carrier groups. ε4(+) exhibited greater volume densities in the hippocampus and the posterior insula across the left hemisphere compared to ε4(−) (p<sub>uncorr</sub> &lt; 0.001 at the peak level). Uncorrected results mapped onto a single subject template taken from SPM12. ε4(+) = APOE ε4 carriers; ε4(−) = APOE ε4 non-carriers.</p>
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<p>Differences in FC between ε4(+) and ε4(−): Seed-based connectivity analysis. (<b>a</b>) Violin plots indicating a significant reduction of FC (p<sub>FDR</sub> &lt; 0.05) between HPC L and both pMTG L and toMTG L in ε4(+) compared to ε4(−). (<b>b</b>) Brain areas indicating statistically significant group differences (effect of the APOE ε4 genotype, p<sub>FDR</sub> &lt; 0.05) in the hippocampal FC between ε4(+) and ε4(−), according to the SBC analysis. Taking the HPC L as the seed, ε4(+) showed a statistically significant reduction in FC with both pMTG L and toMTG L in comparison with ε4(−) (p<sub>FDR</sub> &lt; 0.05). (<b>c</b>) A three-dimensional model of a brain representing the pattern of reduced FC described previously. FC = functional connectivity; p<sub>FDR</sub> = False Discovery Rate <span class="html-italic">p</span>-value; SBC = seed-based connectivity; HPC L = left hippocampus; pMTG L = left posterior region of the middle temporal gyrus; toMTG L = left temporooccipital division of the left middle temporal gyrus; ε4(+) = APOE ε4 carriers; ε4(−) = APOE ε4 non-carriers.</p>
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16 pages, 5155 KiB  
Article
Screening 60Co-γ Irradiated Camellia oleifera Lines for Anthracnose-Resistant
by Jiancai Shen, Chengfeng Xun, Xiaofan Ma, Ying Zhang, Zhen Zhang, Zhilong He, Yimin He, Dayu Yang, Hanggui Lai, Rui Wang and Yongzhong Chen
Horticulturae 2024, 10(9), 940; https://doi.org/10.3390/horticulturae10090940 - 2 Sep 2024
Viewed by 298
Abstract
Camellia oleifera C. Abel is a woody oil crop with multiple purposes. This study aims to investigate the mutagenic effects of 60Co-γ radiation on C. oleifera seedlings and to screen anthracnose-resistant mutants. Two C. oleifera varieties were investigated: ‘Xianglin 1’ (XL1) and [...] Read more.
Camellia oleifera C. Abel is a woody oil crop with multiple purposes. This study aims to investigate the mutagenic effects of 60Co-γ radiation on C. oleifera seedlings and to screen anthracnose-resistant mutants. Two C. oleifera varieties were investigated: ‘Xianglin 1’ (XL1) and ‘Xianglin 210’ (XL210). Seeds were irradiated with 0 Gy, 30 Gy, 50 Gy, and 80 Gy of 60Co-γ, and after one year of planting, the mutagenic lines were studied, and disease-resistant mutants were screened. Results showed that as the radiation intensity was increased, the emergence percentage of both C. oleifera XL210 and XL1 was significantly decreased. Radiation significantly changed the SOD and POD activities in both varieties. Furthermore, 80 Gy irradiated lines showed reduced anthracnose resistance in both varieties. However, 50 Gy irradiated lines showed enhanced disease resistance in XL210 while reducing it in XL1. The 30 Gy irradiated lines did not affect the disease resistance of either variety. Colletotrichum gloeosporioides infection tests were conducted on 94 mutant C. oleifera seedlings, resulting in 8 highly resistant mutants (A3, A8, A10, A19, A21, A32, A35, B17) and 3 susceptible mutants (A4, B15, B27) in XL210 and XL1. Differences in SOD and POD activities led to variations in disease resistance among different mutants. Additionally, the expression levels of CoSOD1, CoPOD, CoIDD4, and CoWKRY78 were varied among the different mutants. This study delivers the screening of disease-resistant mutants in C. oleifera through mutagenic breeding, providing material for the development of new C. oleifera varieties and serving as a resource for further research in mutagenic breeding. Full article
(This article belongs to the Section Plant Pathology and Disease Management (PPDM))
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<p>Effects of different doses of <sup>60</sup>Co-γ radiation on the physiological and biochemical indicators of XL210 and XL1. (<b>A</b>–<b>D</b>) SOD and POD activities and MDA and TF contents in XL210. (<b>E</b>–<b>H</b>) SOD and POD activities and MDA and TF contents in XL1. Different letters indicate significant differences between the group means. Red represents the ‘XL210’, and blue represents ‘XL1’, with varying shades indicating different radiation doses. Error bars are expressed as mean ± SD.</p>
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<p>Lesion diameters of XL210 (<b>A</b>) and XL1 (<b>B</b>) in different radiation groups 7 days after <span class="html-italic">C. gloeosporioides</span> inoculation. * indicates a significant difference compared to 0 Gy (<span class="html-italic">p</span> &lt; 0.05). Different letters indicate significant differences between the group means. Red represents the ‘XL210’, and blue represents ‘XL1’, with varying shades indicating different radiation doses. Error bars are expressed as mean ± SD.</p>
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<p>Representative images of XL210 (<b>A</b>) and XL1. (<b>B</b>) plants with differing disease resistance. (<b>C</b>) lesion diameters of individual plants with varying resistance 7 days after <span class="html-italic">C. gloeosporioides</span> inoculation. A0 and B0 represent the wild types (WT) of XL210 and XL1, respectively. Scale bar = 1 cm. (Red represents the ‘XL210’, and blue represents ‘XL1’, with different shades used to distinguish between control, resistant mutants, and susceptible mutants). Error bars are expressed as mean ± SD.</p>
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<p>Changes in SOD (<b>A</b>) and POD (<b>B</b>) in different germplasms before and after inoculation and their fold increases (red line). Different letters indicate significant differences between the means before and after inoculation. Error bars are expressed as mean ± SD.</p>
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<p>Relative expression levels of <span class="html-italic">CoSOD1</span> (<b>A</b>) and <span class="html-italic">CoPOD</span> (<b>B</b>) in germplasms with different disease resistance. * indicates a significant difference in relative gene expression between different mutants and the wild type. (Red represents the ‘XL210’, and blue represents ‘XL1’, with different shades used to distinguish between control, resistant mutants, and susceptible mutants). Error bars are expressed as mean ± SD.</p>
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<p>Relative expression levels of <span class="html-italic">CoIDD4</span> (<b>A</b>) and <span class="html-italic">CoWRKY78</span> (<b>B</b>) in germplasms with different disease resistance. * indicates a significant difference in relative gene expression between different mutants and the wild type. (Red represents the ‘XL210’, and blue represents ‘XL1’, with different shades used to distinguish between control, resistant mutants, and susceptible mutants.) Error bars are expressed as mean ± SD.</p>
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<p>Correlation coefficient plot showing the relationships between lesion diameter, SOD, and POD activities and the relative expression levels of related genes (<span class="html-italic">CoSOD1</span>, <span class="html-italic">CoPOD</span>, <span class="html-italic">CoIDD4</span>, <span class="html-italic">CoWRKY78</span>) 120 h after <span class="html-italic">C. gloeosporioides</span> inoculation. Gene names represent the relative expression levels. * and ** indicate significant correlations at <span class="html-italic">p</span> &lt; 0.05 and highly significant correlations at <span class="html-italic">p</span> &lt; 0.01, respectively.</p>
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14 pages, 3217 KiB  
Article
Preparation and Application of Multi-Walled Carbon Nanotube-Supported Metconazole Suspension Concentrate for Seed Coating to Control Wheat Sharp Eyespot
by Xuexiang Ren, Dongdong Qi, Zhao Li, Yu Chi, Xianyan Su, Kaixin Gu, Zhenghe Ye, Shun He and Li Chen
Agronomy 2024, 14(9), 1985; https://doi.org/10.3390/agronomy14091985 - 1 Sep 2024
Viewed by 465
Abstract
Wheat sharp eyespot is a prevalent soil-borne disease that causes substantial economic losses in agriculture. Metconazole, a new triazole broad-spectrum fungicide, has demonstrated effective control of soil-borne diseases. Multi-walled carbon nanotubes (MWCNTs) are an innovative adsorbent material known for their large surface area [...] Read more.
Wheat sharp eyespot is a prevalent soil-borne disease that causes substantial economic losses in agriculture. Metconazole, a new triazole broad-spectrum fungicide, has demonstrated effective control of soil-borne diseases. Multi-walled carbon nanotubes (MWCNTs) are an innovative adsorbent material known for their large surface area and high absorptive capacity. This study identifies MWCNTs as the optimal adsorption material for metconazole, achieving an adsorption rate of 85.27% under optimal conditions (stirring time of 30 min and feeding ratio of 6:1). The optimized formula consists of 1.5% dispersant sodium wood, 1% emulsifier BY-112, 2% AEO-15, 3% glycol, 3% filmogen, and 4% red dyes. A 0.5% MWCNT–metconazole suspension concentrate for seed coating (FSC) significantly enhances the inhibitory effect of metconazole on wheat growth and promotes root development. At the tillering stage, a coating ratio of 1:100 shows a marked impact on wheat growth, and MWCNTs can improve the control effect of metconazole to Rhizoctonia cerealis. This work offers a novel approach for applying metconazole in a wheat suspension concentrate for seed coating. Full article
(This article belongs to the Section Pest and Disease Management)
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<p>Electron microscope pictures of MWCNTs.</p>
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<p>Establishment of standard curve for metconazole. (<b>A</b>) Ultraviolet absorption spectrum of metconazole; (<b>B</b>) standard curve for metconazole.</p>
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<p>Establishment of standard curve for metconazole. (<b>A</b>) Ultraviolet absorption spectrum of metconazole; (<b>B</b>) standard curve for metconazole.</p>
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<p>Adsorption curves for different MWCNT inputs over time. The abscissa reflects time, and the ordinate indicates the adsorption rate. The gray, red, blue, green, and purple lines represent ratios of 1:1, 2:1, 4:1, 6:1, and 8:1, respectively.</p>
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<p>The field effect of 0.5% MWCNT–metconazole FSC (DM) and 0.5% metconazole FSC (M) at the seedling stage (<b>top</b>) and tillering stage (<b>bottom</b>). CK: the blank control.</p>
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<p>Plant height (<b>A</b>), root length (<b>B</b>), fresh weight (<b>C</b>), dry weight (<b>D</b>), SPAD (<b>E</b>), and nitrogen content (<b>F</b>) of 0.5% MWCNT–metconazole FSC (DM) and 0.5% metconazole FSC (M) at seedling stage. Significant differences are marked by letters (Student’s <span class="html-italic">t</span>-test, <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Plant height (<b>A</b>), number of tillers (<b>B</b>), fresh weight (<b>C</b>), dry weight (<b>D</b>), SPAD (<b>E</b>), and nitrogen content (<b>F</b>) of 0.5% MWCNT–metconazole FSC (DM) and 0.5% metconazole FSC (M) at tillering stage. Significant differences are marked by letters (Student’s <span class="html-italic">t</span>-test, <span class="html-italic">p</span> &lt; 0.05).</p>
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15 pages, 2287 KiB  
Article
Herbal Companion Crops as an Example of Implementation of Sustainable Plant Protection Practices in Soybean Cultivation
by Adrian Sikora, Joanna Dłużniewska, Bogdan Kulig and Agnieszka Klimek-Kopyra
Agriculture 2024, 14(9), 1485; https://doi.org/10.3390/agriculture14091485 - 1 Sep 2024
Viewed by 423
Abstract
This study aimed to assess the effect of using selected herbs as companion crops in soybean cultivation on the yield and overall health of soybeans. A three-year field experiment (2021–2023) was conducted using a randomized block design with three replications, where the primary [...] Read more.
This study aimed to assess the effect of using selected herbs as companion crops in soybean cultivation on the yield and overall health of soybeans. A three-year field experiment (2021–2023) was conducted using a randomized block design with three replications, where the primary experimental variable was the sowing method. The innovative cropping system involved cultivating soybeans alongside different companion herbs, such as alyssum (Lobularia maritima L.), fennel (Foeniculum vulgare Mill.), borage (Borago officinalis L.), French marigold (Tagetes patula L.), calendula (Calendula officinalis L.), and a herbal mixture referred to as ‘MIX’. The study showed that cultivation of soybean with fennel improved the quantitative and qualitative characteristics of the yield, with a significant increase in seed yield (on average by 0.27 t ha−1) as well as protein (7.67%) and oil yield (8.57%) compared to the pure soybean crop. The following fungal diseases were identified during the three-year study period (2021–2023): Cercospora leaf blight, Ascochyta blight, Fusarium wilt, and downy mildew. Cultivation of soybean with herbs as companion crops was implemented to improve the health of soybean to a varied extent. Borage, marigold, and calendula companion crops reduced infection of soybean by the fungi C. kikuchii and F. oxysporum. Cultivation with fennel and marigold was also beneficial for soybean health. On the other hand, cultivation with sweet alyssum and a mixture of herbs increased the occurrence of the fungus A. sojaecola. Cultivation of soybean in association with herbs is legitimate and requires further research given the priorities facing 21st-century agriculture. Full article
(This article belongs to the Special Issue Advances in the Cultivation and Production of Leguminous Plants)
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<p>Effect of the interaction of years and cropping system on (<b>a</b>) plant height, (<b>b</b>) height of first pod setting, (<b>c</b>) pod number, (<b>d</b>) seed number, (<b>e</b>) pod weight, (<b>f</b>) seed weight per plant. Means in columns with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effect of the interaction of years and cropping system on (<b>a</b>) plant height, (<b>b</b>) height of first pod setting, (<b>c</b>) pod number, (<b>d</b>) seed number, (<b>e</b>) pod weight, (<b>f</b>) seed weight per plant. Means in columns with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effect of the interaction of year and soybean cropping system on the occurrence of (<b>a</b>) Fusarium wilt, (<b>b</b>) Ascochyta blight, (<b>c</b>) Cercospora leaf blight, and (<b>d</b>) downy mildew during the three-year period (2021–2023). Means in columns with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Effect of the interaction of year and soybean cropping system on the occurrence of (<b>a</b>) Fusarium wilt, (<b>b</b>) Ascochyta blight, (<b>c</b>) Cercospora leaf blight, and (<b>d</b>) downy mildew during the three-year period (2021–2023). Means in columns with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Occurrence of Fusarium wilt depending on the developmental stage of soybean in (<b>a</b>) 2021 and (<b>b</b>) 2022. Means in columns with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Occurrence of Ascochyta blight depending on the development stage of soybean in (<b>a</b>) 2021, (<b>b</b>) 2022, and (<b>c</b>) 2023. Means in columns with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Occurrence of Cercospora leaf blight depending on the development stage of soybean in (<b>a</b>) 2021 and (<b>b</b>) 2022. Means in columns with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Occurrence of downy mildew depending on the development stage of soybean in 2023.</p>
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<p>Effect of the interaction of year and soybean cropping system on the occurrence of Fusarium wilt, Ascochyta blight, and Cercospora leaf blight at the (<b>a</b>) BBCH 69 and (<b>b</b>) BBCH 89.</p>
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12 pages, 1480 KiB  
Article
Soil Seed Bank of the Alpine Endemic Carnation, Dianthus pavonius Tausch (Piedmont, Italy), a Useful Model for the Study of Host–Pathogen Dynamics
by Valentina Carasso, Emily L. Bruns, Janis Antonovics and Michael E. Hood
Plants 2024, 13(17), 2432; https://doi.org/10.3390/plants13172432 - 30 Aug 2024
Viewed by 315
Abstract
Soil seedbanks are particularly important for the resiliency of species living in habitats threatened by climate change, such as alpine meadows. We investigated the germination rate and seedbank potential for the endemic species Dianthus pavonius, a carnation native to the Maritime Alps [...] Read more.
Soil seedbanks are particularly important for the resiliency of species living in habitats threatened by climate change, such as alpine meadows. We investigated the germination rate and seedbank potential for the endemic species Dianthus pavonius, a carnation native to the Maritime Alps that is used as model system for disease in natural populations due to its frequent infections by a sterilizing anther-smut pathogen. We aimed to ascertain whether this species can create a persistent reserve of viable seeds in the soil which could impact coevolutionary dynamics. Over three years, we collected data from seeds sown in natural soil and analyzed their germination and viability. We found that D. pavonius seeds are not physiologically dormant and they are able to create a persistent soil seed bank that can store seeds in the soil for up to three years, but lower than the estimated plant lifespan. We conclude that while the seedbank may provide some demographic stability to the host population, its short duration is unlikely to strongly affect the host’s ability to respond to selection from disease. Our findings have implications for the conservation of this alpine species and for understanding the evolutionary dynamics between the host and its pathogen. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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<p>Germination at ground level. (<b>a</b>) Percentage of <span class="html-italic">Dianthus pavonius</span> seeds planted in August 2015 that had germinated during the fall of 2015 and late spring/summer of 2016. Data are summed over all five seed plots, and the cumulative percentage of seeds germinated is given in numbers above. (<b>b</b>) Percentage of seeds germinated in the fall vs late spring for each of the five plots consisting of 100 seeds.</p>
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<p>Percentage of cumulative germinated seeds (ratio between germinated seeds and total recovered seeds) of <span class="html-italic">Dianthus pavonius</span> when buried in the soil for 1 (bar in solid grey), 2 (diagonal lines), and 3 years (crosshatch) in different plots. Data are the means of four replicates (±SE).</p>
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<p>Probability of germination for ungerminated viable seeds of <span class="html-italic">Dianthus pavonius</span> per year under natural field conditions.</p>
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<p>Percentage of <span class="html-italic">Dianthus pavonius</span> germinations with associated seedlings and empty integuments when buried in the soil for 1 (solid grey), 2 (diagonal lines), and 3 years (crosshatch) in different plots. Bars are the means of the four replicates (±SE).</p>
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<p>Percent viability of ungerminated seeds of <span class="html-italic">Dianthus pavonius</span> in year 3 of burial in experimental field soil plots. Parenthetical numbers below the x-axis indicate numbers of ungerminated seeds per plot (pooled among four replicate bags), and error bars indicate 95% confidence intervals.</p>
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