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13 pages, 666 KiB  
Article
Prevalence, Symptom Profiles, and Correlates of Mixed Anxiety–Depression in Male and Female Autistic Youth
by Vicki Bitsika, Christopher F. Sharpley, Kirstan A. Vessey and Ian D. Evans
NeuroSci 2024, 5(3), 315-327; https://doi.org/10.3390/neurosci5030025 - 2 Sep 2024
Viewed by 272
Abstract
Relatively little attention has been given to mixed anxiety and depression in autistic youth, particularly how this differs between males and females. This study investigated sex-based differences in the prevalence and correlates of mixed anxiety and depression in a sample of 51 autistic [...] Read more.
Relatively little attention has been given to mixed anxiety and depression in autistic youth, particularly how this differs between males and females. This study investigated sex-based differences in the prevalence and correlates of mixed anxiety and depression in a sample of 51 autistic males (M age = 10.16 yr, SD = 2.81 yr, and range = 6 yr to 17 yr) and 51 autistic females (M age = − 10.07 yr, SD = 2.76 yr, and range = 6 yr to 17 yr), matched for age, IQ, and autism severity. Self-reports on generalised anxiety disorder and major depressive disorder, morning salivary cortisol, ADOS-2 scores, and WASI-II full-scale scores were collected from these autistic youth, and data on the ASD-related symptoms of these youth were collected from their parents. The data were analysed for total anxiety–depression score levels, for the underlying components of this scale, and for the individual items used in the scale. The results indicate no significant sex differences for the prevalence of mixed anxiety and depression total scores or the underlying components of anxiety and depression or for the individual items of the mixed anxiety–depression scale. There were sex differences in the significant correlates of mixed anxiety and depression: morning cortisol and ASD-related difficulties in social interaction for females, and ASD-related behaviour for males. Males’ feelings of being restless or edgy were correlated with their social interaction and repetitive and restricted behaviour. Females’ difficulties in social interaction were correlated with their concerns about their abilities and their sleeping problems. Females’ sleeping problems, their tendency to talk about dying, and feeling worthless, were correlated with their morning cortisol. These findings suggest that, while mixed anxiety and depression is experienced similarly by autistic males and females at the global, component, and individual item levels, specific aspects of the symptomatology of mixed anxiety and depression are differently associated with aspects of their ASD-related symptomatology and their levels of chronic physiological stress for males and females. Full article
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<p>Mean (SE) of each of the GAD-MDD items for 51 autistic males and 51 autistic females.</p>
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13 pages, 1611 KiB  
Article
The 22q11.2 Deletion Syndrome from A Biopsychosocial Perspective: A Series of Cases with an ICF-Based Approach
by Ana Paula Corrêa Cabral, Dafne Dain Gandelman Horovitz, Lidiane Nogueira Santos, Amanda Oliveira de Carvalho, Cristina Maria Duarte Wigg, Luciana Castaneda, Liane Simon and Carla Trevisan Martins Ribeiro
Children 2024, 11(7), 767; https://doi.org/10.3390/children11070767 - 25 Jun 2024
Viewed by 813
Abstract
The 22q11.2 deletion syndrome (DS) can have a significant impact on functionality. The purpose was to describe 22q11.2DS children with functioning from a biopsychosocial perspective, focusing on the impact of children’s health condition from domains of the International Classification of Functioning, Disability, and [...] Read more.
The 22q11.2 deletion syndrome (DS) can have a significant impact on functionality. The purpose was to describe 22q11.2DS children with functioning from a biopsychosocial perspective, focusing on the impact of children’s health condition from domains of the International Classification of Functioning, Disability, and Health (ICF). Methods: A descriptive, cross-sectional case series study with seven 22q11.2DS children. A questionnaire with an ICF checklist for 22q11.2DS was completed using a structured interview. The Wechsler Abbreviated Scale of Intelligence (WASI) was used to determine the Intelligence Quotient (IQ). Results: Seven participants from 7 to 12 years old, presented some level of IQ impairment. It was observed that 22q11.2DS children experience significant intellectual, cognitive, and speech impairments across ICF Body Function domains. Impairments related to nose and pharynx were found in only one patient. The most relevant categories considered limitations in the Activity and Participation components pertained to producing nonverbal messages, communication, handling stress, and social interaction. Family, health professionals, and acquaintances were perceived as facilitators in the component Environmental Factors. Conclusion: The sample has its functioning affected by aspects that go beyond impairments in body structure and function. The organization of information from the perspective of the ICF is a different approach that helps clinical reasoning. Full article
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<p>Main findings related to the functionality of children and adolescents with 22q11.2DS.</p>
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21 pages, 4222 KiB  
Article
Unveiling the Influence of Climate and Technology on Forest Efficiency: Evidence from Chinese Provinces
by Rizwana Yasmeen and Wasi Ul Hassan Shah
Forests 2024, 15(5), 742; https://doi.org/10.3390/f15050742 - 24 Apr 2024
Viewed by 680
Abstract
The objective of this study is to examine the impact of climate and technology on forest efficiency (FE) in China’s provinces from 2002 to 2020. First, the study used SBM-data envelopment analysis (SBM-DEA) to estimate Chinese provinces’ FE using multidimensional forest inputs and [...] Read more.
The objective of this study is to examine the impact of climate and technology on forest efficiency (FE) in China’s provinces from 2002 to 2020. First, the study used SBM-data envelopment analysis (SBM-DEA) to estimate Chinese provinces’ FE using multidimensional forest inputs and outputs. The climate influence is assessed using temperature, precipitation, sunlight hours, and carbon dioxide levels in the second phase. A climate index was created using principal component analysis (PCA) for a complete estimation. In addition to prior research, we analyze the technology impact through two technological indicators: (i) research and development, and (ii) investment in forests. Furthermore, we explore the non-linear influence of economic development on both FE and climate quality. The regression study by CupFM and CupBC found that temperature and precipitation increase FE, whereas sunlight hours and carbon emissions decrease it. The positive association observed between Climate Index1, and the negative relationship noted for Climate Index2, suggests that forests positively influence climate conditions, signifying that an improvement in FE leads to an improvement in climate quality. Technology boosts forest productivity and climatic quality. The environmental Kuznets curve shows an inverted U-shape relationship between economic development and FE. Similarly, climate and economic development have an inverted U-shaped EKC relationship. Urbanization reduces FE due to human growth and activity. Our findings are important for forest management, climate change, and sustainable development policymakers and scholars. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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<p>Forest Efficiency (dependent variable) trend for Year 2020.</p>
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<p>Independent variables trends of all provinces for 2020.</p>
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<p>Independent variables trends of all provinces for 2020.</p>
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<p>FE trend from 2002 to 2020 by province. Note: measured by SBM-DEA.</p>
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<p>Average FE of Chinese regions from 2002 to 2020 (Tibet excluded).</p>
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<p>(<b>a</b>). Scree plot of eigenvalues for Climate Index1. (<b>b</b>) Component loading plot for Climate Index1. (<b>c</b>) Score variables (PCA) for Climate Index1.</p>
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<p>(<b>a</b>). Scree plot of eigenvalues for Climate Index2. (<b>b</b>) Component loading plot for Climate Index1. (<b>c</b>) Score variables (PCA) for Climate Index1.</p>
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16 pages, 4357 KiB  
Article
Genome-Wide Investigation of Class III Peroxidase Genes in Brassica napus Reveals Their Responsiveness to Abiotic Stresses
by Obaid Ullah Shah, Latif Ullah Khan, Sana Basharat, Lingling Zhou, Muhammad Ikram, Jiantao Peng, Wasi Ullah Khan, Pingwu Liu and Muhammad Waseem
Plants 2024, 13(7), 942; https://doi.org/10.3390/plants13070942 - 25 Mar 2024
Cited by 2 | Viewed by 1246
Abstract
Brassica napus (B. napus) is susceptible to multiple abiotic stresses that can affect plant growth and development, ultimately reducing crop yields. In the past, many genes that provide tolerance to abiotic stresses have been identified and characterized. Peroxidase (POD) proteins, members [...] Read more.
Brassica napus (B. napus) is susceptible to multiple abiotic stresses that can affect plant growth and development, ultimately reducing crop yields. In the past, many genes that provide tolerance to abiotic stresses have been identified and characterized. Peroxidase (POD) proteins, members of the oxidoreductase enzyme family, play a critical role in protecting plants against abiotic stresses. This study demonstrated a comprehensive investigation of the POD gene family in B. napus. As a result, a total of 109 POD genes were identified across the 19 chromosomes and classified into five distinct subgroups. Further, 44 duplicate events were identified; of these, two gene pairs were tandem and 42 were segmental. Synteny analysis revealed that segmental duplication was more prominent than tandem duplication among POD genes. Expression pattern analysis based on the RNA-seq data of B. napus indicated that BnPOD genes were expressed differently in various tissues; most of them were expressed in roots rather than in other tissues. To validate these findings, we performed RT-qPCR analysis on ten genes; these genes showed various expression levels under abiotic stresses. Our findings not only furnish valuable insights into the evolutionary dynamics of the BnPOD gene family but also serve as a foundation for subsequent investigations into the functional roles of POD genes in B. napus. Full article
(This article belongs to the Special Issue Recent Advances in Horticultural Plant Genomics)
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<p>The phylogenetic tree of <span class="html-italic">B. napus</span> and <span class="html-italic">A. thaliana</span> POD proteins. The maximum likelihood phylogenetic tree was constructed using MEGA 11 with 1000 bootstrap replicates. The phylogenetic tree was clustered into 5 subclades (A–E). A distinct color represents each subclade.</p>
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<p>Gene structure of <span class="html-italic">POD</span> genes in <span class="html-italic">B. napus</span>. (<b>a</b>) The phylogenetic tree shows all the <span class="html-italic">BnPOD</span> genes in the five subclades. (<b>b</b>) Conserved motif analysis conducted using MEME Suite. A total of 10 motifs were predicted. (<b>c</b>) The domain organization of <span class="html-italic">BnPODs</span>. (<b>d</b>) Exon–intron organization of <span class="html-italic">BnPODs</span>. The A, B, C, D and E represent each subclades.</p>
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<p>The analysis of the <span class="html-italic">BnPOD</span> promoter regions. The 2 kb sequences of the <span class="html-italic">BnPOD</span> gene-promoter regions were extracted from and analyzed using the PlantCARE database.</p>
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<p>Circos plot of <span class="html-italic">POD</span> gene duplication in <span class="html-italic">B. napus</span>. The different colors represent the genes found in different (A–E subclades) subgroups, and the lines in the middle show segmental and tandem duplications between different chromosomes.</p>
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<p>Dual synteny plots between (<b>a</b>) <span class="html-italic">B. napus</span> and <span class="html-italic">A. thaliana</span>, (<b>b</b>) <span class="html-italic">B. napus</span> and <span class="html-italic">B. rapa</span>, and (<b>c</b>) <span class="html-italic">B. napus</span> and <span class="html-italic">B. oleracea</span> genomes, with orthologous <span class="html-italic">POD</span> genes shown with red connecting lines.</p>
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<p>A network illustration of the regulatory associations among the putative miRNAs and <span class="html-italic">BnPOD</span> genes. The red color indicates the miRNA complimentary site with the position of <span class="html-italic">BnPODs</span> gDNAs.</p>
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<p>Tissue/organ-specific expression patterns of <span class="html-italic">BnPOD</span> genes in <span class="html-italic">B. napus</span> according to in silico RNA-seq data. DAF; days after flowering.</p>
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<p>Expression patterns of selected <span class="html-italic">BnPODs</span> subjected to different abiotic stresses. The data are presented with ±standard errors. Statistically significant differences are denoted by asterisks * <span class="html-italic">p</span> ≤ 0.05. CK, control; D, drought; C, cold; S, salt; H, heat; Cd, cadmium; numbers 2, 4, and 6 indicate time intervals of 2 h, 4 h, and 6 h, respectively. The samples at 0 h were used as a control (CK).</p>
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23 pages, 2370 KiB  
Article
Forestry Resource Efficiency, Total Factor Productivity Change, and Regional Technological Heterogeneity in China
by Wasi Ul Hassan Shah, Gang Hao, Hong Yan, Jintao Shen and Rizwana Yasmeen
Forests 2024, 15(1), 152; https://doi.org/10.3390/f15010152 - 11 Jan 2024
Cited by 6 | Viewed by 1556
Abstract
The efficient and sustainable management of forestry resources is crucial in ensuring economic and societal sustainability. The Chinese government has invested significantly in regulations, afforestation, and technology to enhance the forest resource efficiency, reduce technological disparities, and boost productivity growth. However, the success [...] Read more.
The efficient and sustainable management of forestry resources is crucial in ensuring economic and societal sustainability. The Chinese government has invested significantly in regulations, afforestation, and technology to enhance the forest resource efficiency, reduce technological disparities, and boost productivity growth. However, the success level of this undertaking is unclear and worth exploring. To this end, this study applied DEA-SBM, meta-frontier analysis, and the Malmquist productivity index to gauge the forest resource efficiency (FRE), regional technology heterogeneity (TGR), and total factor productivity growth (MI) in 31 Chinese provinces for a study period of 2001–2020. Results revealed that the average FRE was 0.5430, with potential growth of 45.70%, to enhance the efficiency level in forestry resource utilization. Anhui, Tibet, Fujian, Shanghai, and Hainan were found to be the top performers in forestry utilization during the study period. The southern forest region was ranked highest, with the highest TGR of 0.915, indicating advanced production technologies. The average MI score was 0.9644, signifying a 3.56% decline in forestry resource productivity. This deterioration is primarily attributed to technological change (TC), which decreased by 5.2%, while efficiency change (EC) witnessed 1.74% growth over the study period. The Southern Chinese forest region, indicating an average 3.06% increase in total factor productivity, ranked highest in all four regions. Guangxi, Tianjin, Shandong, Chongqing, and Jiangxi were the top performers, with prominent growth in MI. Finally, the Kruskal–Wallis test found a significant statistical difference among all four regions for FRE and TGR. Full article
(This article belongs to the Section Forest Economics, Policy, and Social Science)
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<p>Top ten countries with the largest forest area in 2020.</p>
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<p>Variation in forestry resource efficiency in China over the period 2001–2020.</p>
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<p>Forest resource efficiency in 31 Chinese provinces (2001–2020).</p>
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<p>FRE distribution in different Chinese regions.</p>
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<p>TGR distribution in different Chinese regions.</p>
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<p>MI distribution in different Chinese regions.</p>
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25 pages, 3596 KiB  
Article
The Impact of Climate Change on China’s Forestry Efficiency and Total Factor Productivity Change
by Wasi Ul Hassan Shah, Gang Hao, Hong Yan, Yuting Lu and Rizwana Yasmeen
Forests 2023, 14(12), 2464; https://doi.org/10.3390/f14122464 - 18 Dec 2023
Cited by 2 | Viewed by 1430
Abstract
The objective of this study is to examine the impact of climate change on forestry efficiency (FRE) and total factor productivity change (TFPC) in 31 provinces of China for a study period of 2001–2020. Additionally, the study aims to evaluate the success level [...] Read more.
The objective of this study is to examine the impact of climate change on forestry efficiency (FRE) and total factor productivity change (TFPC) in 31 provinces of China for a study period of 2001–2020. Additionally, the study aims to evaluate the success level of governmental initiatives used to mitigate climate change. Using the DEA-SBM, this study estimates the forestry efficiency for 31 Chinese provinces and seven regions. Results indicate that the average forestry efficiency score obtained is 0.7155. After considering climatic factors, the efficiency level is 0.5412. East China demonstrates the highest average efficiency with a value of 0.9247, while the lowest score of 0.2473 is observed in Northwest China. Heilongjiang, Anhui, Yunnan, and Tibet exhibit the highest efficiency scores. Mongolia, Heilongjiang, Sichuan, Hebei, and Hunan are the five provinces most affected by climate change. This study’s findings indicate that the average total factor forestry productivity (TFPC) is 1.0480, representing an increase of 4.80%. The primary determinant for change is technology change (TC), which surpasses efficiency change (EC). Including climate variables reduces total factor productivity change (TFPC) to 1.0205, mainly driven by a decrease in TC. The region of South China exhibits the highest total factor productivity change (TFPC) with a value of 1.087, whereas both Northeast China and Central China observe falls below 1 in TFPC. The Mann–Whitney U test provides evidence of statistically significant disparities in forestry efficiency and TFPC scores when estimated with and without incorporating climate factors. Kruskal–Wallis found a statistically significant difference in FRE and TFPC among seven regions. Full article
(This article belongs to the Section Forest Meteorology and Climate Change)
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<p>Forest regions in China. Different colors indicate the different forest regions in China.</p>
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<p>Climate impact on total factor productivity change.</p>
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<p>Climate impact on EC and TC.</p>
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<p>Differences in TFPC, EC, and TC due to climate factor incorporation.</p>
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<p>Climate impact on TFPC, EC, and TC.</p>
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<p>The distribution of Average FRE, TFPC with and without climate factors and in seven different Chinese forest regions.</p>
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26 pages, 6260 KiB  
Article
The Impact of Technological Dynamics and Fiscal Decentralization on Forest Resource Efficiency in China: The Mediating Role of Digital Economy
by Rizwana Yasmeen, Gang Hao, Hong Yan and Wasi Ul Hassan Shah
Forests 2023, 14(12), 2416; https://doi.org/10.3390/f14122416 - 12 Dec 2023
Viewed by 1325
Abstract
This study explores the multi-dimensional relationships between technology, fiscal decentralization, and forest resource efficiency, and the pivotal role played by the digital economy as a mediator in 2002–2020. First, this study evaluates the Chinese provinces’ forest resource efficiency using multi-dimensional inputs and outputs [...] Read more.
This study explores the multi-dimensional relationships between technology, fiscal decentralization, and forest resource efficiency, and the pivotal role played by the digital economy as a mediator in 2002–2020. First, this study evaluates the Chinese provinces’ forest resource efficiency using multi-dimensional inputs and outputs of forest sectors. Further, we use two sorts of technology: high-technology expenditure and forest technology education. Fiscal decentralization in terms of local government expenditure on forest resources makes the study innovative and richer in analysis. A SBM-DEA analysis showed that the Anhui, Beijing, Jiangsu, Shanghai, and Zhejiang provinces have the highest efficiency scores, implying very efficient forest resource management. Subsequently, the robust econometric estimator Driscoll and Kraay is applied. The study’s findings disclose that both dimensions of technology increase the Chinese provinces’ forest resource efficiency through technological expenditure and forest technology education. Fiscal decentralization towards forest resource management expenditure increases the efficiency of forests. Urbanization and economic development reduce the efficiency of forests. The digital economy can effectively help to improve the efficiency of forest resources. The presence of moderating effects reveals that the influence of the digital economy on forest resource efficiency is positive when it is coupled with economic development, fiscal decentralization, technology, and urbanization. Full article
(This article belongs to the Section Forest Economics, Policy, and Social Science)
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<p>Forest area over (2002–2020) of Chinese provinces. Provinces are shown at horizontal axis.</p>
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<p>Trend of forests in the province over the years 2002–2020.</p>
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<p>Forest resource efficiency in 2020.</p>
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<p>Independent variables trend in the 2020 year.</p>
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<p>Heat map of correlation. Different color shows the Corr matrix values between variables.</p>
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<p>Estimation road map.</p>
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<p>Forest resource efficiency of Chinese provinces (2002–2020).</p>
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<p>Average forest resource by year (2002–2020). Color lines shows the average forest resource efficiency.</p>
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<p>High technology impact on forest resources efficiency.</p>
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<p>Technology education impact on forest resources efficiency.</p>
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<p>Fiscal decentralization impact on forest resources efficiency.</p>
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<p>Digital economy impact on forest resources efficiency.</p>
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2 pages, 1519 KiB  
Correction
Correction: Yasmeen et al. The Synergy of Water Resource Agglomeration and Innovative Conservation Technologies on Provincial and Regional Water Usage Efficiency in China: A Super SBM-DEA Approach. Water 2023, 15, 3524
by Rizwana Yasmeen, Gang Hao, Yusen Ye, Wasi Ul Hassan Shah and Caihong Tang
Water 2023, 15(22), 3985; https://doi.org/10.3390/w15223985 - 16 Nov 2023
Viewed by 664
Abstract
In the original publication [...] Full article
(This article belongs to the Section Water Resources Management, Policy and Governance)
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<p>Water usage efficiency by year (2006–2020) of the provinces.</p>
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<p>Water usage efficiency by regions (2006–2020).</p>
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22 pages, 5655 KiB  
Article
Atypical Associations between Functional Connectivity during Pragmatic and Semantic Language Processing and Cognitive Abilities in Children with Autism
by Amparo V. Márquez-García, Bonnie K. Ng, Grace Iarocci, Sylvain Moreno, Vasily A. Vakorin and Sam M. Doesburg
Brain Sci. 2023, 13(10), 1448; https://doi.org/10.3390/brainsci13101448 - 11 Oct 2023
Viewed by 1487
Abstract
Autism Spectrum Disorder (ASD) is characterized by both atypical functional brain connectivity and cognitive challenges across multiple cognitive domains. The relationship between task-dependent brain connectivity and cognitive abilities, however, remains poorly understood. In this study, children with ASD and their typically developing (TD) [...] Read more.
Autism Spectrum Disorder (ASD) is characterized by both atypical functional brain connectivity and cognitive challenges across multiple cognitive domains. The relationship between task-dependent brain connectivity and cognitive abilities, however, remains poorly understood. In this study, children with ASD and their typically developing (TD) peers engaged in semantic and pragmatic language tasks while their task-dependent brain connectivity was mapped and compared. A multivariate statistical approach revealed associations between connectivity and psychometric assessments of relevant cognitive abilities. While both groups exhibited brain–behavior correlations, the nature of these associations diverged, particularly in the directionality of overall correlations across various psychometric categories. Specifically, greater disparities in functional connectivity between the groups were linked to larger differences in Autism Questionnaire, BRIEF, MSCS, and SRS-2 scores but smaller differences in WASI, pragmatic language, and Theory of Mind scores. Our findings suggest that children with ASD utilize distinct neural communication patterns for language processing. Although networks recruited by children with ASD may appear less efficient than those typically engaged, they could serve as compensatory mechanisms for potential disruptions in conventional brain networks. Full article
(This article belongs to the Special Issue Brain Correlates of Typical and Atypical Development)
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<p>Schematic illustration of fMRI stimuli for (<b>A</b>) semantic condition and (<b>B</b>) pragmatic condition. Note. A trial sequence started with a display of objects and communicating actors. A context sentence (e.g., “What can I get you?” in the pragmatic condition (<b>A</b>) or “What are these called?” in the semantic condition (<b>B</b>), was uttered by the Partner. Following this, a series of five scenes was shown, in which the Speaker’s face appeared together with the critical spoken utterance, which served for naming (semantic) vs. requesting (pragmatic). The words were identical for both speech acts. The word scenes were followed by a series of five acting scenes involving the objects mentioned in the worked utterances (handing over an object in the requesting condition or pointing at it in the naming condition).</p>
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<p>The patterns of overall correlations between functional connectivity and psychometrics in ASD, as revealed by Behavioral PLS analysis. One psychometric score is associated with one correlation value, which was estimated in a multivariate way across all the fMRI features (functional connectivity for all ROI pairings) using Behavioral PLS analysis. Variables “score cartoon #1”, “score cartoon #2”, and “score cartoon #3” represents scores from the three scenarios in the Bystander Cartoon tests (Theory of Mind).</p>
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<p>The patterns of overall correlations between psychometrics and brain connectivity in TD, as revealed by Behavioral PLS analysis. Variables “score cartoon #1”, “score cartoon #2”, and “score cartoon #3” represents scores from the three scenarios in the Bystander Cartoon tests (Theory of Mind).</p>
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<p>The maps of z-scores illustrate the robustness of contributions of individual connections (ROI pairings) to the overall correlations in TD, as shown in <a href="#brainsci-13-01448-f002" class="html-fig">Figure 2</a>. The maps are shown separately for the pragmatic and semantic conditions. Displayed as 500 × 500 matrices, these maps correspond to the 500 Regions of Interest (ROIs) defined in the parcellation atlas. Each ROI is allocated to one of 17 functional MRI networks for each hemisphere (LH and RH).</p>
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<p>The maps of z-scores illustrate the robustness of contributions of individual connections (ROI pairings) to the overall correlations in TD, as shown in <a href="#brainsci-13-01448-f003" class="html-fig">Figure 3</a>. Similarly to <a href="#brainsci-13-01448-f004" class="html-fig">Figure 4</a>, these maps correspond to the 500 Regions of Interest (ROIs) defined in the original parcellation of the brain.</p>
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<p>The patterns of overall correlations between group differences in bran connectivity and group differences in psychometrics. These patterns are shown separately for the pragmatic and sematic conditions. Variables “score cartoon #1”, “score cartoon #2”, and “score cartoon #3” represents scores from the three scenarios in the Bystander Cartoon tests (Theory of Mind).</p>
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<p>Maps of z-scores from PLS analysis exploring correlations (<a href="#brainsci-13-01448-f006" class="html-fig">Figure 6</a>) between group differences in psychometric scores and group differences in brain connectivity.</p>
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<p>Baseline-corrected maps of z-scores associated with the analysis of correlations between group differences in brain connectivity and group differences in psychometric scores for the pragmatic and semantic conditions (<a href="#brainsci-13-01448-f006" class="html-fig">Figure 6</a> and <a href="#brainsci-13-01448-f007" class="html-fig">Figure 7</a>).</p>
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19 pages, 2516 KiB  
Article
The Synergy of Water Resource Agglomeration and Innovative Conservation Technologies on Provincial and Regional Water Usage Efficiency in China: A Super SBM-DEA Approach
by Rizwana Yasmeen, Gang Hao, Yusen Ye, Wasi Ul Hassan Shah and Caihong Tang
Water 2023, 15(19), 3524; https://doi.org/10.3390/w15193524 - 9 Oct 2023
Cited by 8 | Viewed by 1815 | Correction
Abstract
China is currently facing the significant task of effectively managing its water resources to satisfy the rising needs while grappling with the growing worries of water shortage. In this context, it becomes crucial to comprehend the importance of resource agglomeration and technological adoption. [...] Read more.
China is currently facing the significant task of effectively managing its water resources to satisfy the rising needs while grappling with the growing worries of water shortage. In this context, it becomes crucial to comprehend the importance of resource agglomeration and technological adoption. Thus, this research examines the relationship between water resource agglomeration and the adoption of innovative conservation technologies in enhancing water usage efficiency at provincial and regional levels in China (2006–2020). In the first stage, the study utilizes a super SBM-Data Envelopment Analysis (DEA) methodology to evaluate the water usage efficiency of China’s provinces and regions. In the second stage, we find the dynamic nexuses between water resources, water technologies (recycling, sprinkler irrigation) and water usage efficiency by applying a systematic econometric approach. SBM-DEA analysis revealed that Beijing (1.08), Shaanxi (1.01), Shanghai (1.23) and Tianjin (1.01) remained the higher efficient over the years. Six provinces (Guangdong, Shandong, Jiangsu, Inner Mongolia, Hebei, and Zhejiang) are in the middle ranges (0.55–0.83). In contrast, nineteen provinces have the lowest water usage efficiency (0.21–049). Qinghai and Ningxia are on the lowest rank (0.21) and (0.22), respectively. The findings recommended that the water resources impact is negative. In comparison, the impact of water-saving mechanisms on the efficiency of water usage seems to be positive, as recycling technology significantly enhances the water usage efficiency in China’s province. The study found that GDP growth has a negative impact on water usage efficiency in the early stages of economic development. Still, as economies mature, this negative impact diminishes, indicating a tendency to allocate more resources to water conservation and efficiency. Water recycling technology, the modernization of irrigation methods, and water resource management can enhance water efficiency. Full article
(This article belongs to the Section Water Resources Management, Policy and Governance)
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<p>Flow-chart of estimation procedure.</p>
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<p>Water usage efficiency by year (2006–2020) of the provinces.</p>
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<p>Water usage efficiency by regions (2006–2020).</p>
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<p>Water resources of the provinces (2006–2020).</p>
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<p>Water recycling of the provinces (2006–2020).</p>
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18 pages, 4649 KiB  
Article
PCa-Clf: A Classifier of Prostate Cancer Patients into Patients with Indolent and Aggressive Tumors Using Machine Learning
by Yashwanth Karthik Kumar Mamidi, Tarun Karthik Kumar Mamidi, Md Wasi Ul Kabir, Jiande Wu, Md Tamjidul Hoque and Chindo Hicks
Mach. Learn. Knowl. Extr. 2023, 5(4), 1302-1319; https://doi.org/10.3390/make5040066 - 27 Sep 2023
Viewed by 1648
Abstract
A critical unmet medical need in prostate cancer (PCa) clinical management centers around distinguishing indolent from aggressive tumors. Traditionally, Gleason grading has been utilized for this purpose. However, tumor classification using Gleason Grade 7 is often ambiguous, as the clinical behavior of these [...] Read more.
A critical unmet medical need in prostate cancer (PCa) clinical management centers around distinguishing indolent from aggressive tumors. Traditionally, Gleason grading has been utilized for this purpose. However, tumor classification using Gleason Grade 7 is often ambiguous, as the clinical behavior of these tumors follows a variable clinical course. This study aimed to investigate the application of machine learning techniques (ML) to classify patients into indolent and aggressive PCas. We used gene expression data from The Cancer Genome Atlas and compared gene expression levels between indolent and aggressive tumors to identify features for developing and validating a range of ML and stacking algorithms. ML algorithms accurately distinguished indolent from aggressive PCas. With the accuracy of 96%, the stacking model was superior to individual ML algorithms when all samples with primary Gleason Grades 6 to 10 were used. Excluding samples with Gleason Grade 7 improved accuracy to 97%. This study shows that ML algorithms and stacking models are powerful approaches for the accurate classification of indolent versus aggressive PCas. Future implementation of this methodology may significantly impact clinical decision making and patient outcomes in the clinical management of prostate cancer. Full article
(This article belongs to the Special Issue Machine Learning for Biomedical Data Processing)
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<p>Flowchart depicting study design and execution workflow. Only the genes significantly differentially expressed between tumors and controls discovered in the level 1 analysis were considered in the level 2 analysis.</p>
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<p>The flowchart represents the implementation of the stacking approach incorporating different combinations of ML algorithms.</p>
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<p>The figure represents the accuracy percentage of Model 1 before classification.</p>
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<p>Three-dimensional principal component analysis (PCA) plot of Model 1. (Here, blue represents indolent samples, and red represents aggressive samples).</p>
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<p>The figure represents the accuracy percentage of Model 2 before classification.</p>
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<p>Three-dimensional principal component analysis (PCA) plot of Model 2. (Here, blue represents indolent samples, and red represents aggressive samples).</p>
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<p>The figure represents the accuracy percentage samples with GG 7 before classification. Here, the <span class="html-italic">x</span>-axis represents log fold change values, and the <span class="html-italic">y</span>-axis represents accuracy.</p>
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<p>Principal component analysis (PCA) plot of Model 3. (Here, blue represents indolent samples, and red represents aggressive samples).</p>
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<p>Figure representing the misclassified instances in samples from both datasets (samples with GG 7 and samples with GGs 6–10).</p>
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<p>After classifying only samples with GG 7 with 5 different classifiers at different log-fold change values, the figure represents all the samples’ accuracy.</p>
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<p>The figure represents the principal component analysis of Model 1.</p>
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<p>The figure represents the principal component analysis of Model 2.</p>
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27 pages, 8566 KiB  
Review
Model Driven Approach for Efficient Flood Disaster Management with Meta Model Support
by Saad Mazhar Khan, Imran Shafi, Wasi Haider Butt, Isabel de la Torre Díez, Miguel Angel López Flores, Juan Castañedo Galvlán and Imran Ashraf
Land 2023, 12(8), 1538; https://doi.org/10.3390/land12081538 - 3 Aug 2023
Cited by 2 | Viewed by 2647
Abstract
Society and the environment are severely impacted by catastrophic events, specifically floods. Inadequate emergency preparedness and response are frequently the result of the absence of a comprehensive plan for flood management. This article proposes a novel flood disaster management (FDM) system using the [...] Read more.
Society and the environment are severely impacted by catastrophic events, specifically floods. Inadequate emergency preparedness and response are frequently the result of the absence of a comprehensive plan for flood management. This article proposes a novel flood disaster management (FDM) system using the full lifecycle disaster event model (FLCNDEM), an abstract model based on the function super object. The proposed FDM system integrates data from existing flood protocols, languages, and patterns and analyzes viewing requests at various phases of an event to enhance preparedness and response. The construction of a task library and knowledge base to initialize FLCNDEM results in FLCDEM flooding response. The proposed FDM system improves the emergency response by offering a comprehensive framework for flood management, including pre-disaster planning, real-time monitoring, and post-disaster evaluation. The proposed system can be modified to accommodate various flood scenarios and enhance global flood management. Full article
(This article belongs to the Section Land Systems and Global Change)
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<p>Block diagram of the flow of the work.</p>
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<p>Challenges related to the flood management system.</p>
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<p>Problem-solving through the model-driven approach.</p>
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<p>The figure depicts VIIRS satellite observations of precipitation across Pakistan from 1 January 2022, to 29 August 2022. The 75,000 km<math display="inline"><semantics><msup><mrow/><mn>2</mn></msup></semantics></math> of land, including 48,530 km<math display="inline"><semantics><msup><mrow/><mn>2</mn></msup></semantics></math> of croplands, appears to be damaged by flood waters in the assessed area of 793,000 km<math display="inline"><semantics><msup><mrow/><mn>2</mn></msup></semantics></math>. Based on the world population and the most flood water that could fill an area, at least 22 million people could be at risk or live near flooded areas in August 2022. UNOSAT is credited [<a href="#B33-land-12-01538" class="html-bibr">33</a>].</p>
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<p>Architecture of the natural disaster event management system.</p>
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<p>Meta-object facility MOF architecture with four levels for the flood and disaster management system.</p>
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<p>Arrangement of information regarding dangers.</p>
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<p>Requirements for observation at various emergency stages.</p>
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<p>M1 level meta model without instances (attributes and operations).</p>
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<p>M2 level meta model diagram of FDM system; FE denotes a flood occurrence.</p>
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<p>Tree view diagram of FDMS for the flood.</p>
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<p>Tree view diagram of FDM system for the model in Sirius.</p>
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<p>Validating the connections of the meta-model.</p>
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<p>Validating the connections of meta-model in Sirius.</p>
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37 pages, 1258 KiB  
Review
A Systematic Review of Disaster Management Systems: Approaches, Challenges, and Future Directions
by Saad Mazhar Khan, Imran Shafi, Wasi Haider Butt, Isabel de la Torre Diez, Miguel Angel López Flores, Juan Castanedo Galán and Imran Ashraf
Land 2023, 12(8), 1514; https://doi.org/10.3390/land12081514 - 29 Jul 2023
Cited by 21 | Viewed by 11696
Abstract
Disaster management is a critical area that requires efficient methods and techniques to address various challenges. This comprehensive assessment offers an in-depth overview of disaster management systems, methods, obstacles, and potential future paths. Specifically, it focuses on flood control, a significant and recurrent [...] Read more.
Disaster management is a critical area that requires efficient methods and techniques to address various challenges. This comprehensive assessment offers an in-depth overview of disaster management systems, methods, obstacles, and potential future paths. Specifically, it focuses on flood control, a significant and recurrent category of natural disasters. The analysis begins by exploring various types of natural catastrophes, including earthquakes, wildfires, and floods. It then delves into the different domains that collectively contribute to effective flood management. These domains encompass cutting-edge technologies such as big data analysis and cloud computing, providing scalable and reliable infrastructure for data storage, processing, and analysis. The study investigates the potential of the Internet of Things and sensor networks to gather real-time data from flood-prone areas, enhancing situational awareness and enabling prompt actions. Model-driven engineering is examined for its utility in developing and modeling flood scenarios, aiding in preparation and response planning. This study includes the Google Earth engine (GEE) and examines previous studies involving GEE. Moreover, we discuss remote sensing; remote sensing is undoubtedly a valuable tool for disaster management, and offers geographical data in various situations. We explore the application of Geographical Information System (GIS) and Spatial Data Management for visualizing and analyzing spatial data and facilitating informed decision-making and resource allocation during floods. In the final section, the focus shifts to the utilization of machine learning and data analytics in flood management. These methodologies offer predictive models and data-driven insights, enhancing early warning systems, risk assessment, and mitigation strategies. Through this in-depth analysis, the significance of incorporating these spheres into flood control procedures is highlighted, with the aim of improving disaster management techniques and enhancing resilience in flood-prone regions. The paper addresses existing challenges and provides future research directions, ultimately striving for a clearer and more coherent representation of disaster management techniques. Full article
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<p>Block diagram showing the workflow followed in this review.</p>
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<p>Methodology adopted for the literature review.</p>
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<p>Earthquake keywords.</p>
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<p>Ratio of the earthquake detector terms to number of authors.</p>
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<p>Types of earthquake detector.</p>
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<p>Earthquake effects on the environment.</p>
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22 pages, 2182 KiB  
Perspective
Biotechnological Intervention and Withanolide Production in Withania coagulans
by Zishan Ahmad, Arjumend Shaheen, Adla Wasi, Shams ur Rehman, Sabaha Tahseen, Muthusamy Ramakrishnan, Anamica Upadhyay, Irfan Bashir Ganie, Anwar Shahzad and Yulong Ding
Agronomy 2023, 13(8), 1997; https://doi.org/10.3390/agronomy13081997 - 28 Jul 2023
Cited by 1 | Viewed by 1789
Abstract
Withania coagulans (Stocks) Dunal is used in traditional medicine to treat diseases and has numerous pharmacological properties due to its biological compounds. The plant is a subshrub native to Asia, especially the tropical and temperate regions of western Asia. Its medicinal effects derive [...] Read more.
Withania coagulans (Stocks) Dunal is used in traditional medicine to treat diseases and has numerous pharmacological properties due to its biological compounds. The plant is a subshrub native to Asia, especially the tropical and temperate regions of western Asia. Its medicinal effects derive from its biological components, which are linked to human health. Conventional medicine uses these compounds to treat a variety of diseases, such as neurological issues, diabetes, and asthma. The long-term benefits of W. coagulans necessitate conservation strategies and plant biotechnological techniques such as micropropagation, synthetic seed, cell suspension, and hairy root elicitation technology, and genetic transformation can all play significant roles in conservation and sustainable utilization of the biological compounds for clinical uses. The objective of this review is to provide a comprehensive overview of the W. cogaulans medicinal properties, potential applications, and innovative approaches for sustainable utilization, making it a unique contribution to the existing body of knowledge. Multi-omics methods for the production of withanolides were also examined in order to gain a better understanding of the genome structure, prospective genes, and candidate proteins involved in the production. Full article
(This article belongs to the Special Issue Research Progress and Application Prospect of Medicinal Plants)
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<p>Geographical distribution of <span class="html-italic">W. coagulans</span> (source: <a href="https://www.gbif.org/species/3801167" target="_blank">https://www.gbif.org/species/3801167</a>, accessed on 16 May 2023).</p>
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<p>Different pharmacological activities of <span class="html-italic">W. coagulans</span> [source (figure in the center): Wikimedia commons; Creative Commons Attributions-Share Alike 4.0 International license; Attribution: AhmadHB] [This figure was created with <a href="https://biorender.com/" target="_blank">https://biorender.com/</a> (accessed on 16 May 2023)].</p>
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<p>Micropropagation protocol and synthetics seed production in <span class="html-italic">Withania coagulans</span> (source: unpublished culture photographs from our group). (<b>A</b>) Explant inoculation, (<b>B</b>,<b>C</b>) shoot multiplication, (<b>D</b>) in vitro rooting, and (<b>E</b>,<b>F</b>) synthetic seeds.</p>
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<p>Types of elicitors [<a href="#B80-agronomy-13-01997" class="html-bibr">80</a>].</p>
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<p><span class="html-italic">Agrobacterium</span>-mediated genetic transformation [this figure was created with <a href="https://biorender.com/" target="_blank">https://biorender.com/</a> (accessed on 16 May 2023)].</p>
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14 pages, 10082 KiB  
Article
TAFPred: Torsion Angle Fluctuations Prediction from Protein Sequences
by Md Wasi Ul Kabir, Duaa Mohammad Alawad, Avdesh Mishra and Md Tamjidul Hoque
Biology 2023, 12(7), 1020; https://doi.org/10.3390/biology12071020 - 19 Jul 2023
Cited by 1 | Viewed by 1746
Abstract
Protein molecules show varying degrees of flexibility throughout their three-dimensional structures. The flexibility is determined by the fluctuations in torsion angles, specifically phi (φ) and psi (ψ), which define the protein backbone. These angle fluctuations are derived from variations in backbone torsion angles [...] Read more.
Protein molecules show varying degrees of flexibility throughout their three-dimensional structures. The flexibility is determined by the fluctuations in torsion angles, specifically phi (φ) and psi (ψ), which define the protein backbone. These angle fluctuations are derived from variations in backbone torsion angles observed in different models. By analyzing the fluctuations in Cartesian coordinate space, we can understand the structural flexibility of proteins. Predicting torsion angle fluctuations is valuable for determining protein function and structure when these angles act as constraints. In this study, a machine learning method called TAFPred is developed to predict torsion angle fluctuations using protein sequences directly. The method incorporates various features, such as disorder probability, position-specific scoring matrix profiles, secondary structure probabilities, and more. TAFPred, employing an optimized Light Gradient Boosting Machine Regressor (LightGBM), achieved high accuracy with correlation coefficients of 0.746 and 0.737 and mean absolute errors of 0.114 and 0.123 for the φ and ψ angles, respectively. Compared to the state-of-the-art method, TAFPred demonstrated significant improvements of 10.08% in MAE and 24.83% in PCC for the phi angle and 9.93% in MAE, and 22.37% in PCC for the psi angle. Full article
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<p>Torsion angles phi (φ) and psi (ψ). The phi angle is the angle around the -N-CA- bond (where ‘CA’ is the alpha-carbon), and the psi angle is the angle around the -CA-C- bond.</p>
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<p>Illustration of the workflow of the torsion angle fluctuation predictions.</p>
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<p>Feature extraction from different tools.</p>
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<p>Selection of sliding window size with optimized LightGBM regressor (phi angle). Among the tested window sizes, it was found that a window size of 3 achieved the highest 1-MAE+PCC (mean absolute error + Pearson correlation coefficient) for the psi angle.</p>
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<p>Selection of sliding window size with optimized LightGBM regressor (psi angle). Among the tested window sizes, it was found that a window size of 3 yielded the highest value of 1-MAE+PCC for the psi angle.</p>
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<p>The torsion-angle fluctuation is depicted in its distribution, with the data points divided into 10 bins. The fluctuations of the phi and psi angles are visually represented using red and green colors, respectively.</p>
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<p>The relationship between Δφ and Δψ is shown in the figure, revealing that the majority of residues exhibit small fluctuations below 0.2.</p>
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<p>Relationship between torsion-angle fluctuation in the phi angle and disordered regions. The disordered probability was obtained from the SPOT-Disordered2 tool. The figure illustrates that regions with low disordered probability exhibit correspondingly low fluctuations in the phi angle, and conversely, regions with high disordered probability show higher fluctuations in the phi angle.</p>
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<p>Correlation between torsion-angle fluctuation in the psi angle and the presence of disordered regions. The disordered probability was obtained through the utilization of the SPOT-Disordered2 tool. The figure clearly illustrates that regions with low disordered probability exhibit lower fluctuations in the psi angle, while regions with high disordered probability tend to have higher fluctuations in the psi angle.</p>
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