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18 pages, 592 KiB  
Article
Enhancing the Cooling of a Rotating Mirror in a Laguerre–Gaussian Cavity Optorotational System via Nonlinear Cross-Kerr Interaction
by Xinyue Cao, Sumei Huang, Li Deng and Aixi Chen
Photonics 2024, 11(10), 960; https://doi.org/10.3390/photonics11100960 (registering DOI) - 13 Oct 2024
Abstract
The cooling of a macroscopic mechanical oscillator to its quantum ground state is an important step for achieving coherent control over mechanical quantum states. Here, we theoretically study the cooling of a rotating mirror in a Laguerre–Gaussian (L-G) cavity optorotational system with a [...] Read more.
The cooling of a macroscopic mechanical oscillator to its quantum ground state is an important step for achieving coherent control over mechanical quantum states. Here, we theoretically study the cooling of a rotating mirror in a Laguerre–Gaussian (L-G) cavity optorotational system with a nonlinear cross-Kerr (CK) interaction. We discuss the effects of the nonlinear CK coupling strength, the cavity detuning, the power of the input Gaussian beam, the topological charge (TC) of the L-G cavity mode, the mass of the rotating mirror, and the cavity length on the cooling of the rotating mirror. We find that it is only possible to realize the improvement in the cooling of the rotating mirror by the nonlinear CK interaction when the cavity detuning is less than the mechanical frequency. Compared to the case without the nonlinear CK interaction, we find that the cooling of the rotating mirror can be improved by the nonlinear CK interaction at lower laser powers, smaller TCs of the L-G cavity mode, larger masses of a rotating mirror, and longer optorotational cavities. We show that the cooling of the rotating mirror can be enhanced by the nonlinear CK interaction by a factor of about 23.3 compared to that without the nonlinear CK interaction. Full article
(This article belongs to the Section Quantum Photonics and Technologies)
Show Figures

Figure 1

Figure 1
<p>The L-G cavity optorotational system with the nonlinear CK interaction. The system consists of one fixed end mirror and one rotating end mirror. The rotating end mirror is part of a torsional pendulum mounted on the support S and can rotate round the <span class="html-italic">z</span> axis. A Gaussian beam (G) is used to drive a cavity mode. The angular displacement of the rotating end mirror from its equilibrium position <math display="inline"><semantics> <mrow> <msub> <mi>ϕ</mi> <mn>0</mn> </msub> <mo>=</mo> <mn>0</mn> </mrow> </semantics></math> is denoted by <math display="inline"><semantics> <mi>ϕ</mi> </semantics></math>. The TCs carried by the light beams at different locations along the <span class="html-italic">z</span> axis are shown, and <span class="html-italic">l</span> is the TC value. A two-level system (red) on the rotating end mirror produces the nonlinear CK interaction between the cavity field and the rotating end mirror.</p>
Full article ">Figure 2
<p>The effective mean phonon number <math display="inline"><semantics> <msub> <mi>n</mi> <mrow> <mi>e</mi> <mi>f</mi> <mi>f</mi> </mrow> </msub> </semantics></math> of the rotating end mirror against the normalized cavity detuning <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>/</mo> <msub> <mi>ω</mi> <mi>m</mi> </msub> </mrow> </semantics></math> for various values of the nonlinear CK strengths <math display="inline"><semantics> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> </semantics></math>. The parameters used are as follows: <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>=</mo> <mn>100</mn> </mrow> </semantics></math> ng, <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mm, <math display="inline"><semantics> <mrow> <mo>℘</mo> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mW, and <math display="inline"><semantics> <mrow> <mi>l</mi> <mo>=</mo> <mn>20</mn> </mrow> </semantics></math>. The black solid, blue-dotted, red dot-dashed, green short-dashed, and cyan long-dashed curves are for <math display="inline"><semantics> <mrow> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> <mo>/</mo> <mrow> <mo>(</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>g</mi> <mo>)</mo> </mrow> <mo>=</mo> <mn>0</mn> </mrow> </semantics></math>, 0.25, 0.5, 0.75, 1, respectively.</p>
Full article ">Figure 3
<p>(<b>a</b>) The effective mean phonon number <math display="inline"><semantics> <msub> <mi>n</mi> <mrow> <mi>e</mi> <mi>f</mi> <mi>f</mi> </mrow> </msub> </semantics></math> of the rotating end mirror and (<b>b</b>) the ratio <span class="html-italic">r</span> against the normalized nonlinear CK strength <math display="inline"><semantics> <mrow> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> <mo>/</mo> <mrow> <mo>(</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>g</mi> <mo>)</mo> </mrow> </mrow> </semantics></math> for various values <span class="html-italic">l</span> of the TC of the L-G cavity mode. The parameters used: <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>=</mo> <mn>100</mn> </mrow> </semantics></math> ng, <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mm, <math display="inline"><semantics> <mrow> <mo>℘</mo> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mW, and <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>=</mo> <mn>0.35</mn> <mo> </mo> <msub> <mi>ω</mi> <mi>m</mi> </msub> </mrow> </semantics></math>. The black solid, blue-dotted, red dot-dashed, green short-dashed, and cyan long-dashed curves are for <math display="inline"><semantics> <mrow> <mi>l</mi> <mo>=</mo> <mn>20</mn> <mo>,</mo> <mn>30</mn> <mo>,</mo> <mn>40</mn> <mo>,</mo> <mn>60</mn> <mo>,</mo> <mn>80</mn> </mrow> </semantics></math>, respectively.</p>
Full article ">Figure 4
<p>The effective mean phonon number <math display="inline"><semantics> <msub> <mi>n</mi> <mrow> <mi>e</mi> <mi>f</mi> <mi>f</mi> </mrow> </msub> </semantics></math> of the rotating end mirror against the normalized nonlinear CK strength <math display="inline"><semantics> <mrow> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> <mo>/</mo> <mrow> <mo>(</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>g</mi> <mo>)</mo> </mrow> </mrow> </semantics></math> for various values of the power <span class="html-italic">℘</span> of the input Gaussian beam. The black solid, blue-dotted, red dot-dashed, and green-dashed curves are for <math display="inline"><semantics> <mrow> <mo>℘</mo> <mo>=</mo> <mn>1</mn> <mo>,</mo> <mn>2</mn> <mo>,</mo> <mn>3</mn> <mo>,</mo> <mn>4</mn> </mrow> </semantics></math> mW, respectively. The parameters used the following: <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>=</mo> <mn>100</mn> </mrow> </semantics></math> ng, <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mm, <math display="inline"><semantics> <mrow> <mi>l</mi> <mo>=</mo> <mn>20</mn> </mrow> </semantics></math>, and <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>=</mo> <mn>0.35</mn> </mrow> </semantics></math> <math display="inline"><semantics> <msub> <mi>ω</mi> <mi>m</mi> </msub> </semantics></math>.</p>
Full article ">Figure 5
<p>The effective mean phonon number <math display="inline"><semantics> <msub> <mi>n</mi> <mrow> <mi>e</mi> <mi>f</mi> <mi>f</mi> </mrow> </msub> </semantics></math> of the rotating end mirror against the power <span class="html-italic">℘</span> of the input Gaussian beam for various values of the nonlinear CK strengths <math display="inline"><semantics> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> </semantics></math>. The parameters used are the following: <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>=</mo> <mn>100</mn> </mrow> </semantics></math> ng, <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mm, and <math display="inline"><semantics> <mrow> <mi>l</mi> <mo>=</mo> <mn>20</mn> </mrow> </semantics></math>. (<b>a</b>) <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>=</mo> <mn>0.35</mn> <mo> </mo> <msub> <mi>ω</mi> <mi>m</mi> </msub> </mrow> </semantics></math>; (<b>b</b>) <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>=</mo> <msub> <mi>ω</mi> <mi>m</mi> </msub> </mrow> </semantics></math>. The black solid, blue-dotted, red dot-dashed, green short-dashed, and cyan long-dashed curves are for <math display="inline"><semantics> <mrow> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> <mo>/</mo> <mrow> <mo>(</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>g</mi> <mo>)</mo> </mrow> <mo>=</mo> <mn>0</mn> </mrow> </semantics></math>, 0.25, 0.5, 0.75, 1, respectively.</p>
Full article ">Figure 6
<p>The effective mean phonon number <math display="inline"><semantics> <msub> <mi>n</mi> <mrow> <mi>e</mi> <mi>f</mi> <mi>f</mi> </mrow> </msub> </semantics></math> of the rotating end mirror against the value <span class="html-italic">l</span> of the TC of the L-G cavity mode for various values of the nonlinear CK strengths <math display="inline"><semantics> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> </semantics></math>. The parameters used were the following: <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>=</mo> <mn>100</mn> </mrow> </semantics></math> ng, <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mm, <math display="inline"><semantics> <mrow> <mo>℘</mo> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mW, and <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>=</mo> <mn>0.35</mn> <mo> </mo> <msub> <mi>ω</mi> <mi>m</mi> </msub> </mrow> </semantics></math>. The black solid, blue-dotted, red dot-dashed, green short-dashed, and cyan long-dashed curves are for <math display="inline"><semantics> <mrow> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> <mo>/</mo> <mrow> <mo>(</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>g</mi> <mo>)</mo> </mrow> <mo>=</mo> <mn>0</mn> <mo>,</mo> <mn>0.25</mn> <mo>,</mo> <mn>0.5</mn> <mo>,</mo> <mn>0.75</mn> <mo>,</mo> <mn>1</mn> </mrow> </semantics></math>, respectively.</p>
Full article ">Figure 7
<p>The effective mean phonon number <math display="inline"><semantics> <msub> <mi>n</mi> <mrow> <mi>e</mi> <mi>f</mi> <mi>f</mi> </mrow> </msub> </semantics></math> of the rotating end mirror against the normalized nonlinear CK strength <math display="inline"><semantics> <mrow> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> <mo>/</mo> <mrow> <mo>(</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>g</mi> <mo>)</mo> </mrow> </mrow> </semantics></math> for different masses <span class="html-italic">m</span> of the rotating end mirror. The parameters used were the following: <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mm, <math display="inline"><semantics> <mrow> <mo>℘</mo> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mW, <math display="inline"><semantics> <mrow> <mi>l</mi> <mo>=</mo> <mn>20</mn> </mrow> </semantics></math>, and <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>=</mo> <mn>0.35</mn> <mo> </mo> <msub> <mi>ω</mi> <mi>m</mi> </msub> </mrow> </semantics></math>. The black solid, blue-dotted, red dot-dashed curves are for <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>=</mo> <mn>50</mn> </mrow> </semantics></math>, 100, and 150 ng, respectively.</p>
Full article ">Figure 8
<p>The effective mean phonon number <math display="inline"><semantics> <msub> <mi>n</mi> <mrow> <mi>e</mi> <mi>f</mi> <mi>f</mi> </mrow> </msub> </semantics></math> of the rotating end mirror against the normalized nonlinear CK strength <math display="inline"><semantics> <mrow> <msub> <mi>g</mi> <mrow> <mi>c</mi> <mi>k</mi> </mrow> </msub> <mo>/</mo> <mrow> <mo>(</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>g</mi> <mo>)</mo> </mrow> </mrow> </semantics></math> for different lengths <span class="html-italic">L</span> of the optical cavity. The parameters used were the following: <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>=</mo> <mn>100</mn> </mrow> </semantics></math> ng, <math display="inline"><semantics> <mrow> <mo>℘</mo> <mo>=</mo> <mn>1</mn> </mrow> </semantics></math> mW, <math display="inline"><semantics> <mrow> <mi>l</mi> <mo>=</mo> <mn>20</mn> </mrow> </semantics></math>, and <math display="inline"><semantics> <mrow> <msub> <mo>Δ</mo> <mn>0</mn> </msub> <mo>=</mo> <mn>0.35</mn> <mo> </mo> <msub> <mi>ω</mi> <mi>m</mi> </msub> </mrow> </semantics></math>. The black solid, blue-dotted, red dot-dashed curves are for <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>0.8</mn> </mrow> </semantics></math>, 1, 1.2 mm, respectively.</p>
Full article ">
12 pages, 878 KiB  
Article
Analysis of ABCB1 Gene Polymorphisms and Their Impact on Tacrolimus Blood Levels in Kidney Transplant Recipients
by Corina Andreea Rotarescu, Ion Maruntelu, Ion Rotarescu, Alexandra-Elena Constantinescu and Ileana Constantinescu
Int. J. Mol. Sci. 2024, 25(20), 10999; https://doi.org/10.3390/ijms252010999 (registering DOI) - 12 Oct 2024
Abstract
Tacrolimus (Tc) is an immunosuppressant used in transplant patients, but its therapeutic range is narrow, making precise dosing essential. This study investigates the association of three single nucleotide polymorphisms (SNPs) (ABCB1 3435C>T, 1236C>T, 2677G>T/A) with Tc levels over time to gain better insights [...] Read more.
Tacrolimus (Tc) is an immunosuppressant used in transplant patients, but its therapeutic range is narrow, making precise dosing essential. This study investigates the association of three single nucleotide polymorphisms (SNPs) (ABCB1 3435C>T, 1236C>T, 2677G>T/A) with Tc levels over time to gain better insights into their role in personalized medicine. We conducted the study over four distinct periods: 1–14 days, 15–30 days, 31–60 days, and beyond 60 days post-transplantation. The analysis included allele, genotype, haplotype, and diplotype frequencies of the three SNPs concerning Tc blood levels. Statistical significance was determined, and false discovery rate (PFDR) correction was applied where appropriate. Significant associations were found between the C (ABCB1 C1236T), A alleles (ABCB1 G2677T/A), the CAC haplotype and lower Tc levels. The CAC-TGT and TGT-TGT diplotypes significantly influence how patients metabolize the drug. The TGT haplotype and the AA genotype (ABCB1 G2677T/A) were associated with higher Tc levels, suggesting a long-term genetic influence. Genetic factors, specifically certain SNPs and diplotypes, significantly impact Tc blood levels, with their influence varying over time. Full article
(This article belongs to the Section Molecular Pharmacology)
27 pages, 12606 KiB  
Article
Dynamic Wireless Charging of Electric Vehicles Using PV Units in Highways
by Tamer F. Megahed, Diaa-Eldin A. Mansour, Donart Nayebare, Mohamed F. Kotb, Ahmed Fares, Ibrahim A. Hameed and Haitham El-Hussieny
World Electr. Veh. J. 2024, 15(10), 463; https://doi.org/10.3390/wevj15100463 (registering DOI) - 12 Oct 2024
Abstract
Transitioning from petrol or gas vehicles to electric vehicles (EVs) poses significant challenges in reducing emissions, lowering operational costs, and improving energy storage. Wireless charging EVs offer promising solutions to wired charging limitations such as restricted travel range and lengthy charging times. This [...] Read more.
Transitioning from petrol or gas vehicles to electric vehicles (EVs) poses significant challenges in reducing emissions, lowering operational costs, and improving energy storage. Wireless charging EVs offer promising solutions to wired charging limitations such as restricted travel range and lengthy charging times. This paper presents a comprehensive approach to address the challenges of wireless power transfer (WPT) for EVs by optimizing coupling frequency and coil design to enhance efficiency while minimizing electromagnetic interference (EMI) and heat generation. A novel coil design and adaptive hardware are proposed to improve power transfer efficiency (PTE) by defining the optimal magnetic resonant coupling WPT and mitigating coil misalignment, which is considered a significant barrier to the widespread adoption of WPT for EVs. A new methodology for designing and arranging roadside lanes and facilities for dynamic wireless charging (DWC) of EVs is introduced. This includes the optimization of transmitter coils (TCs), receiving coils (RCs), compensation circuits, and high-frequency inverters/converters using the partial differential equation toolbox (pdetool). The integration of wireless charging systems with smart grid technology is explored to enhance energy distribution and reduce peak load issues. The paper proposes a DWC system with multiple segmented transmitters integrated with adaptive renewable photovoltaic (PV) units and a battery system using the utility main grid as a backup. The design process includes the determination of the required PV array capacity, station battery sizing, and inverters/converters to ensure maximum power point tracking (MPPT). To validate the proposed system, it was tested in two scenarios: charging a single EV at different speeds and simultaneously charging two EVs over a 1 km stretch with a 50 kW system, achieving a total range of 500 km. Experimental validation was performed through real-time simulation and hardware tests using an OPAL-RT platform, demonstrating a power transfer efficiency of 90.7%, thus confirming the scalability and feasibility of the system for future EV infrastructure. Full article
(This article belongs to the Special Issue Wireless Power Transfer Technology for Electric Vehicles)
Show Figures

Figure 1

Figure 1
<p>DWC station block diagram.</p>
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<p>Equivalent circuit of PV.</p>
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<p>Station control loop flowchart.</p>
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<p>Types of coil systems.</p>
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<p>Magnetically coupled ideal coils.</p>
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<p>Compensation circuit types: (<b>a</b>) series–series “SS”; (<b>b</b>) parallel–parallel “PP”; (<b>c</b>) series–parallel “SP”; (<b>d</b>) parallel–series “PS”.</p>
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<p>Design procedure for DWC for EVB.</p>
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<p>The spiral coil arrangement design using pdetool.</p>
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<p>The spiral coil arrangement design using pdetool.</p>
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<p>The dominant magnetic field component.</p>
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<p>Two identical resonators for transmitter and receiver coils modeled as linear arrays at a specific distance.</p>
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<p>Changing the frequency with different S21 values.</p>
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<p>Changing the frequency against different S21 values and distance.</p>
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<p>Prototype setup layout.</p>
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<p>Prototype operation process.</p>
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<p>PV power generated on testing days.</p>
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<p>Source voltage and current.</p>
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<p>System battery voltage.</p>
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<p>DC link voltage and current.</p>
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<p>Roadside winding voltage and current.</p>
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<p>Vehicle side winding voltage and current.</p>
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<p>Car battery SOC.</p>
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<p>Sending and receiving power.</p>
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<p>Consumed active and reactive power.</p>
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16 pages, 985 KiB  
Article
The Composition of the HDL Particle and Its Capacity to Remove Cellular Cholesterol Are Associated with a Reduced Risk of Developing Active Inflammatory Rheumatoid Arthritis
by Marcia Benacchio Giacaglia, Vitoria Pires Felix, Monique de Fatima Mello Santana, Leonardo Szalos Amendola, Perola Goberstein Lerner, Sibelle D. Elia Fernandes, Cleber Pinto Camacho and Marisa Passarelli
Int. J. Mol. Sci. 2024, 25(20), 10980; https://doi.org/10.3390/ijms252010980 (registering DOI) - 12 Oct 2024
Abstract
In rheumatoid arthritis (RA), the risk of cardiovascular death is 50% higher compared to the general population. This increased risk is partly due to the systemic inflammation characteristic of RA and changes in the lipoprotein profiles. This study investigated plasma lipid levels, lipid [...] Read more.
In rheumatoid arthritis (RA), the risk of cardiovascular death is 50% higher compared to the general population. This increased risk is partly due to the systemic inflammation characteristic of RA and changes in the lipoprotein profiles. This study investigated plasma lipid levels, lipid ratios, and the composition and functionality of high-density lipoprotein (HDL) in control individuals and RA subjects based on the disease’s inflammatory score (DAS28). This study included 50 control (CTR) individuals and 56 subjects with RA, divided into remission/low-activity disease (DAS28 < 3.2; n = 13) and active disease (DAS28 ≥ 3.2; n = 43). Plasma lipids (total cholesterol, TC; triglycerides, TG) and the HDL composition (TC; TG; phospholipids, PL) were determined using enzymatic methods; apolipoprotein B (apoB) and apoA-1 were measured by immunoturbidimetry. HDL-mediated cholesterol efflux and anti-inflammatory activity were assessed in bone marrow-derived macrophages. Comparisons were made using the Mann–Whitney test, and binary logistic regression was used to identify the predictors of active RA. A p-value < 0.05 was considered significant. TC, HDLc, and the TC/apoB ratio were higher in RA subjects compared to the CTR group. Subjects with active disease exhibited higher levels of TG and the TG/HDLc ratio and lower levels of HDLc, the TG/apoB ratio, TC, and apoA-1 in HDL particles compared to those with remission/low-activity RA. Increased levels of HDLc [odds ratio (OR) 0.931, 95% CI = 0.882–0.984], TC/apoB (OR 0.314, 95% CI = 0.126–0.78), HDL content in TC (OR 0.912, 95% CI = 0.853–0.976), PL (OR 0.973, 95% CI = 0.947–1.000), and apoA-1 (OR 0.932, 95% CI = 0.882–0.985) were associated with a decreased risk of active disease, but BMI (OR 1.169, 95% CI = 1.004–1.360) and TG (OR 1.031, 95% CI = 1.005–1.057) were positively associated with active disease. A reduction in HDL-mediated cholesterol efflux increased the OR for active RA by 26.2%. The plasma levels of HDLc, along with the composition and functionality of HDL, influence the inflammatory score in RA and may affect the development of cardiovascular disease. Full article
(This article belongs to the Section Molecular Immunology)
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Figure 1

Figure 1
<p>HDL anti-inflammatory activity. Bone marrow-derived macrophages were overloaded with acetylated LDL and exposed to HDL isolated from CTR (<span class="html-italic">n</span> = 50) and RA (<span class="html-italic">n</span> = 56) subjects. Following this, the cells were challenged with LPS, and the levels of IL-6 and TNF were determined by ELISA. Data were compared using the Mann–Whitney test between CTR and RA (<b>A</b>,<b>B</b>) or between RA cases with DAS 28 &lt; 3.2 and DAS 28 ≥ 3.2 (<b>C</b>,<b>D</b>).</p>
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<p>Cholesterol efflux mediated by HDL. Bone marrow-derived macrophages were overloaded with acetylated LDL and <sup>14</sup>C-cholesterol and then exposed to HDL isolated from CTR (<span class="html-italic">n</span> = 50) and RA (<span class="html-italic">n</span> = 56) subjects as acceptors of cellular cholesterol. Data were compared using the Mann–Whitney test between CTR and RA (<b>A</b>) or between RA cases with DAS 28 &lt; 3.2 and DAS 28 ≥ 3.2 (<b>B</b>).</p>
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15 pages, 3914 KiB  
Article
Flow Cytometric Immunophenotyping: Minimal Differences in Fresh and Cryopreserved Peripheral Blood Mononuclear Cells versus Whole Blood
by Andrea Tompa, Junko Johansson, Ulrika Islander and Maria Faresjö
Biomedicines 2024, 12(10), 2319; https://doi.org/10.3390/biomedicines12102319 (registering DOI) - 11 Oct 2024
Abstract
Background/Objectives: Flow cytometry is a convenient tool in immunophenotyping for monitoring the status of immunological conditions and diseases. The aim of this study was to investigate the effect of isolation and cryopreservation by flow cytometric analysis on subpopulations of CD4+ T [...] Read more.
Background/Objectives: Flow cytometry is a convenient tool in immunophenotyping for monitoring the status of immunological conditions and diseases. The aim of this study was to investigate the effect of isolation and cryopreservation by flow cytometric analysis on subpopulations of CD4+ T helper (Th), T regulatory (Treg), CD8+ T cytotoxic (Tc), CD56+ NK, CD19+ B and monocytes. Freshly isolated and cryopreserved peripheral blood mononuclear cells (PBMCs) were compared to fresh whole blood. Methods: Peripheral blood was collected from healthy donors and prepared for flow cytometric analysis using the same panels of antibodies throughout the study. Results: Comparisons between fresh (F)- and cryopreserved (C)-PBMCs showed no major differences in percentages of CD4+, Th1, Th2 and CD4+CD25+CD127low Treg cells. No differences in percentage of CD8+ or subpopulations of naive/stem, central or effector memory cells were observed between F- and C-PBMCs. The percentage of CD56+ NK cells, CD19+ B cells or classical and nonclassical monocytes did not differ between F-and C-PBMCs either. On the contrary, whole blood had lower percentages of Th and NK cells but higher percentages of Th1, Th17, Th1Th17, Tregs, Tc and B cells compared to C-PBMCs, while it had a higher proportion of Tc compared to F-PBMCs. Conclusions: Flow cytometric immunophenotyping minimally differs between freshly isolated and cryopreserved PBMCs. This implies the possibility of cryostorage of cohorts for later analysis. Importantly, care must be taken when comparing results from whole blood with isolated and cryopreserved PBMCs. Collectively, these results can contribute to the standardization of flow cytometric protocols in both clinical and research settings. Full article
(This article belongs to the Collection Advances in Leukocyte Biology)
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<p>Flow cytometry analysis of CD4<sup>+</sup> T helper cells, with (<b>A</b>) a representative gating strategy for a PBMC sample. The percentages of (<b>B</b>) CD4<sup>+</sup> T cells among single lymphocytes were analyzed by flow cytometry, as well as the proportions of (<b>C</b>) CD25<sup>+</sup>CD127<sup>low</sup>, (<b>D</b>) CD25<sup>+</sup>CD127<sup>low</sup>FoxP3<sup>+</sup> and (<b>F</b>) PD-1<sup>+</sup> cells among all CD4<sup>+</sup> T cells. (<b>E</b>) The FoxP3 MFI for the CD25<sup>+</sup>CD127<sup>low</sup> cells was also measured. PBMCs = peripheral blood mononuclear cells. Cryo = cryopreserved. MFI = median fluorescence intensity. ns=non-significant. Paired non-parametric Friedman test, followed by Dunn’s multiple comparisons test; n = 10 for (<b>B</b>,<b>F</b>) and n = 9 for (<b>C</b>–<b>E</b>). * indicates <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01 (adjusted <span class="html-italic">p</span>-values).</p>
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<p>Flow cytometry analysis of different CD4<sup>+</sup> T helper subpopulations with (<b>A</b>) a representative gating strategy for a PBMC sample. The percentages of CD4<sup>+</sup> T cells with (<b>B</b>) Th1 (CCR4<sup>−</sup>CCR6<sup>−</sup>CXCR3<sup>+</sup>), (<b>C</b>) Th2 (CCR4<sup>+</sup>CCR6<sup>−</sup>CXCR3<sup>−</sup>), (<b>D</b>) Th17 (CCR4<sup>+</sup>CCR6<sup>+</sup>CXCR3<sup>−</sup>) and (<b>E</b>) Th1Th17 (CCR4<sup>−</sup>CCR6<sup>+</sup>CXCR3<sup>+</sup>) phenotypes were analyzed by flow cytometry. PBMCs = peripheral blood mononuclear cells. Cryo = cryopreserved. ns = non-significant. Paired non-parametric Friedman test, followed by Dunn’s multiple comparisons test, n = 10. * Indicates <span class="html-italic">p</span> &lt; 0.05, *** <span class="html-italic">p</span> &lt; 0.001 and **** <span class="html-italic">p</span> &lt; 0.0001 (adjusted <span class="html-italic">p</span>-values).</p>
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<p>Flow cytometry analysis of CD8<sup>+</sup> T cytotoxic cells with (<b>A</b>) a representative gating strategy for a PBMC sample. The percentages of (<b>B</b>) CD8<sup>+</sup> T cells among single lymphocytes were analyzed by flow cytometry, as well as the proportions of (<b>C</b>) naive/stem cell memory cells (CD45RA<sup>+</sup>CCR7<sup>+</sup>), (<b>D</b>) central memory (CD45RA<sup>−</sup>CCR7<sup>+</sup>), (<b>E</b>) effector memory (CD45RA<sup>−</sup>CCR7<sup>−</sup>), (<b>F</b>) TEMRA (CD45RA<sup>+</sup>CCR7<sup>−</sup>) and (<b>G</b>) PD-1<sup>+</sup> cells among all CD8<sup>+</sup> T cells. PBMCs = peripheral blood mononuclear cells. Cryo = cryopreserved. ns=non-significant. Paired non-parametric Friedman test, followed by Dunn’s multiple comparisons test, n = 10. * Indicates <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01 (adjusted <span class="html-italic">p</span>-values).</p>
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<p>Flow cytometry analysis of various lymphocyte and monocyte populations with (<b>A</b>) a representative gating strategy for a PBMC sample. Flow cytometry was used to analyze the percentages of (<b>B</b>) CD19<sup>+</sup> B cells and (<b>C</b>) CD56<sup>+</sup> NK cells among all CD3<sup>−</sup> lymphocytes, as well as the proportions of (<b>D</b>) CD56<sup>bright</sup>CD16<sup>−</sup> and (<b>E</b>) CD56<sup>dim</sup>CD16<sup>+</sup> NK cells and the percentages of (<b>F</b>) classical (CD14<sup>+</sup>CD16<sup>−</sup>), (<b>G</b>) intermediate (CD14<sup>+</sup>CD16<sup>+</sup>) and (<b>H</b>) nonclassical (CD14<sup>−</sup>CD16<sup>+</sup>) monocytes. PBMCs = peripheral blood mononuclear cells. Cryo = cryopreserved. ns = non-significant. Paired non-parametric Friedman test, followed by Dunn’s multiple comparisons test, n = 8. * Indicates <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01 and *** <span class="html-italic">p</span> &lt; 0.001 (adjusted <span class="html-italic">p</span>-values).</p>
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25 pages, 1792 KiB  
Review
Breaking Barriers: Exploiting Envelope Biogenesis and Stress Responses to Develop Novel Antimicrobial Strategies in Gram-Negative Bacteria
by Renu Bisht, Pierre D. Charlesworth, Paola Sperandeo and Alessandra Polissi
Pathogens 2024, 13(10), 889; https://doi.org/10.3390/pathogens13100889 - 11 Oct 2024
Abstract
Antimicrobial resistance (AMR) has emerged as a global health threat, necessitating immediate actions to develop novel antimicrobial strategies and enforce strong stewardship of existing antibiotics to manage the emergence of drug-resistant strains. This issue is particularly concerning when it comes to Gram-negative bacteria, [...] Read more.
Antimicrobial resistance (AMR) has emerged as a global health threat, necessitating immediate actions to develop novel antimicrobial strategies and enforce strong stewardship of existing antibiotics to manage the emergence of drug-resistant strains. This issue is particularly concerning when it comes to Gram-negative bacteria, which possess an almost impenetrable outer membrane (OM) that acts as a formidable barrier to existing antimicrobial compounds. This OM is an asymmetric structure, composed of various components that confer stability, fluidity, and integrity to the bacterial cell. The maintenance and restoration of membrane integrity are regulated by envelope stress response systems (ESRs), which monitor its assembly and detect damages caused by external insults. Bacterial communities encounter a wide range of environmental niches to which they must respond and adapt for survival, sustenance, and virulence. ESRs play crucial roles in coordinating the expression of virulence factors, adaptive physiological behaviors, and antibiotic resistance determinants. Given their role in regulating bacterial cell physiology and maintaining membrane homeostasis, ESRs present promising targets for drug development. Considering numerous studies highlighting the involvement of ESRs in virulence, antibiotic resistance, and alternative resistance mechanisms in pathogens, this review aims to present these systems as potential drug targets, thereby encouraging further research in this direction. Full article
(This article belongs to the Section Bacterial Pathogens)
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<p>Summary of outer membrane biogenesis pathways in Gram-negative bacteria. The following elements are represented in different colors: the Lol pathway in yellow, the Bam pathway in blue, and the Lpt pathway in green. The gray IM complexes SecYEG and MsbA are not directly members of these pathways but contribute through translocation of their substrates. Unfolded proteins destined for the Lol and Bam pathway are shown below SecYEG in yellow and blue, respectively. The signal sequences are shown at the N-terminus in red, and the β-signal sequence is shown in the unfolded Bam protein in yellow. The pink molecule LepB located in the IM is the signal transpeptidase that catalyzes the removal of the signal sequence from unfolded outer membrane proteins. The molecules shown in orange represent the various outer membrane protein chaperones. The box in the bottom left of the figure depicts the legend representing LPS, PL molecules, and the peptidoglycan matrix layer.</p>
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<p>Summary of envelope stress response pathways and two component systems in Gram-negative bacteria. CpxAR is shown in green, BaeSR in light gray, AdeSR in dark gray, PhoPQ in pink, PmrAB in orange, σ<sup>E</sup> in blue, and Rcs in yellow. Below each system is an overview of the processes regulated following activation of the envelope stress response: green represents upregulated processes and red represents downregulated processes. The molecular framework of the cell envelope remains consistent with the legend depicted in the bottom left box in <a href="#pathogens-13-00889-f001" class="html-fig">Figure 1</a>.</p>
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17 pages, 1601 KiB  
Review
Effect of Abelmoschus esculentus L. (Okra) on Dyslipidemia: Systematic Review and Meta-Analysis of Clinical Studies
by Kabelo Mokgalaboni, Wendy N. Phoswa, Tyson T. Mokgalabone, Sanele Dlamini, Ashwell R. Ndhlala, Perpetua Modjadji and Sogolo L. Lebelo
Int. J. Mol. Sci. 2024, 25(20), 10922; https://doi.org/10.3390/ijms252010922 - 10 Oct 2024
Abstract
The global prevalence of cardiovascular diseases (CVDs), including dyslipidemia and atherosclerosis, is rising. While pharmacological treatments for dyslipidemia and associated CVDs exist, not all individuals can afford them, and those who do often experience adverse side effects. Preclinical studies have indicated the potential [...] Read more.
The global prevalence of cardiovascular diseases (CVDs), including dyslipidemia and atherosclerosis, is rising. While pharmacological treatments for dyslipidemia and associated CVDs exist, not all individuals can afford them, and those who do often experience adverse side effects. Preclinical studies have indicated the potential benefits of Abelmoschus esculentus and its active phytochemicals in addressing dyslipidemia in rodent models of diabetes. However, there is limited clinical evidence on lipid parameters. Thus, this study aimed to assess the potential impact of Abelmoschus esculentus on dyslipidemia. A literature search was performed on PubMed, Scopus, and Cochrane Library for relevant trials published from inception until 11 August 2024. Data analysis was performed using Jamovi software version 2.4.8 and Review Manager (version 5.4), with effect estimates reported as standardized mean differences (SMDs) and 95% confidence intervals (CI). The evidence from eight studies with nine treatment arms showed that Abelmoschus esculentus reduces total cholesterol (TC), SMD = −0.53 (95% CI: −1.00 to −0.07), p = 0.025), compared to placebo. Additionally, triglyceride (TG) was reduced in Abelmoschus esculentus compared to placebo, SMD = −0.24 (95% CI: −0.46 to −0.02), p = 0.035. Furthermore, low-density lipoprotein (LDL) was also reduced, SMD = −0.35 (95% CI: −0.59 to −0.11), p = 0.004 in Abelmoschus esculentus versus placebo. This remedy substantially increased high-density lipoprotein (HDL), SMD = 0.34 (95% CI: 0.07 to 0.61), p = 0.014). Abelmoschus esculentus substantially improved lipid profile in prediabetes, T2D, obesity, and diabetic nephropathy. While the evidence confirms the potential benefits of Abelmoschus esculentus in reducing dyslipidemia, it is important for future clinical studies to standardize the effective dosage for more reliable results. Therefore, future trials should focus on these markers in well-designed trials with sufficient sample sizes. Furthermore, Abelmoschus esculentus can be supplemented to the diet of the relevant populations to alleviate dyslipidemia. Full article
(This article belongs to the Special Issue Food Science and Molecular Nutrition)
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<p>PRISMA flow chart showing the study selection process.</p>
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<p>Effect of <span class="html-italic">Abelmoschus esculentus</span> on the level of total cholesterol [<a href="#B28-ijms-25-10922" class="html-bibr">28</a>,<a href="#B45-ijms-25-10922" class="html-bibr">45</a>,<a href="#B46-ijms-25-10922" class="html-bibr">46</a>,<a href="#B47-ijms-25-10922" class="html-bibr">47</a>,<a href="#B48-ijms-25-10922" class="html-bibr">48</a>,<a href="#B49-ijms-25-10922" class="html-bibr">49</a>,<a href="#B50-ijms-25-10922" class="html-bibr">50</a>,<a href="#B51-ijms-25-10922" class="html-bibr">51</a>]. The results are presented as standardized mean differences (SMD) and 95% confidence intervals. The black squares demonstrate the sample size in individual studies; the error bars show the confidence interval (lower and upper quartiles), and the diamond shape shows the overall effect size, a: low-dose, b: high-dose.</p>
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<p>Effect of <span class="html-italic">Abelmoschus esculentus</span> the level of triglycerides [<a href="#B28-ijms-25-10922" class="html-bibr">28</a>,<a href="#B45-ijms-25-10922" class="html-bibr">45</a>,<a href="#B46-ijms-25-10922" class="html-bibr">46</a>,<a href="#B47-ijms-25-10922" class="html-bibr">47</a>,<a href="#B48-ijms-25-10922" class="html-bibr">48</a>,<a href="#B49-ijms-25-10922" class="html-bibr">49</a>,<a href="#B50-ijms-25-10922" class="html-bibr">50</a>]. The results are presented as standardized mean differences (SMD) and 95% confidence intervals. The black squares demonstrate the sample size in individual studies; the error bars show the confidence interval (lower and upper quartiles), and the diamond shape shows the overall effect size, a: low-dose, b: high-dose.</p>
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<p>Effect of <span class="html-italic">Abelmoschus esculentus</span> on the level of low-density lipoprotein [<a href="#B28-ijms-25-10922" class="html-bibr">28</a>,<a href="#B45-ijms-25-10922" class="html-bibr">45</a>,<a href="#B46-ijms-25-10922" class="html-bibr">46</a>,<a href="#B47-ijms-25-10922" class="html-bibr">47</a>,<a href="#B48-ijms-25-10922" class="html-bibr">48</a>,<a href="#B49-ijms-25-10922" class="html-bibr">49</a>,<a href="#B50-ijms-25-10922" class="html-bibr">50</a>]. The results are presented as standardized mean differences (SMD) and 95% confidence intervals. The black squares demonstrate the sample size in individual studies; the error bars show the confidence interval (lower and upper quartiles), and the diamond shape shows the overall effect size, a: low-dose, b: high-dose.</p>
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<p>Effect of <span class="html-italic">Abelmoschus esculentus</span> on the level of high-density lipoprotein [<a href="#B28-ijms-25-10922" class="html-bibr">28</a>,<a href="#B45-ijms-25-10922" class="html-bibr">45</a>,<a href="#B46-ijms-25-10922" class="html-bibr">46</a>,<a href="#B47-ijms-25-10922" class="html-bibr">47</a>,<a href="#B48-ijms-25-10922" class="html-bibr">48</a>,<a href="#B49-ijms-25-10922" class="html-bibr">49</a>,<a href="#B50-ijms-25-10922" class="html-bibr">50</a>]. The results are presented as standardized mean differences (SMD) and 95% confidence intervals. The black squares demonstrate the sample size in individual studies; the error bars show the confidence interval (lower and upper quartiles), and the diamond shape shows the overall effect size, a: low-dose, b: high-dose.</p>
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27 pages, 13175 KiB  
Article
Tree Completion Net: A Novel Vegetation Point Clouds Completion Model Based on Deep Learning
by Binfu Ge, Shengyi Chen, Weibing He, Xiaoyong Qiang, Jingmei Li, Geer Teng and Fang Huang
Remote Sens. 2024, 16(20), 3763; https://doi.org/10.3390/rs16203763 - 10 Oct 2024
Abstract
To improve the integrity of vegetation point clouds, the missing vegetation point can be compensated through vegetation point clouds completion technology. Further, it can enhance the accuracy of these point clouds’ applications, particularly in terms of quantitative calculations, such as for the urban [...] Read more.
To improve the integrity of vegetation point clouds, the missing vegetation point can be compensated through vegetation point clouds completion technology. Further, it can enhance the accuracy of these point clouds’ applications, particularly in terms of quantitative calculations, such as for the urban living vegetation volume (LVV). However, owing to factors like the mutual occlusion between ground objects, sensor perspective, and penetration ability limitations resulting in missing single tree point clouds’ structures, the existing completion techniques cannot be directly applied to the single tree point clouds’ completion. This study combines the cutting-edge deep learning techniques, for example, the self-supervised and multiscale Encoder (Decoder), to propose a tree completion net (TC-Net) model that is suitable for the single tree structure completion. Being motivated by the attenuation of electromagnetic waves through a uniform medium, this study proposes an uneven density loss pattern. This study uses the local similarity visualization method, which is different from ordinary Chamfer distance (CD) values and can better assist in visually assessing the effects of point cloud completion. Experimental results indicate that the TC-Net model, based on the uneven density loss pattern, effectively identifies and compensates for the missing structures of single tree point clouds in real scenarios, thus reducing the average CD value by above 2.0, with the best result dropping from 23.89 to 13.08. Meanwhile, experiments on a large-scale tree dataset show that TC-Net has the lowest average CD value of 13.28. In the urban LVV estimates, the completed point clouds have reduced the average MAE, RMSE, and MAPE from 9.57, 7.78, and 14.11% to 1.86, 2.84, and 5.23%, respectively, thus demonstrating the effectiveness of TC-Net. Full article
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Graphical abstract
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<p>Schematic diagram of the missing structure of a single tree point clouds obtained by MLS.</p>
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<p>Overall research approach.</p>
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<p>Specific structure of TC-Net.</p>
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<p>Schematic diagram of the random spherical missing point clouds pattern. The blue point clouds above represent the complete point clouds, and the gray point clouds below represents the missing point clouds.</p>
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<p>Schematic diagram of the missing mode of real MLS point clouds data.</p>
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<p>Schematic diagram of uneven density loss mode.</p>
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<p>Schematic diagram of the uneven density loss mode.</p>
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<p>Local similarity visualization of complete point clouds.</p>
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<p>Local similarity visualization of incomplete point clouds.</p>
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<p>Distribution of the three test areas in the experiments.</p>
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<p>Self-collected MLS point cloud data set.</p>
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<p>Display of the complete tree point clouds data, which are collected by our MLS equipment and are all down-sampled to 2048 points using the FPS algorithm.</p>
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<p>Test results of training TC-Net based on density loss pattern.</p>
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<p>Model training based on the density loss method directly predicts the true incomplete tree point clouds results. The model correctly predicts and completes the structural completion, as marked by the red and blue boxes.</p>
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<p>Comparison of different types of point clouds in the test area. MLS point clouds is shown above, and the reconstructed point clouds is shown below.</p>
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<p>Comparison of the incomplete point clouds, predicted complete point clouds, and the reconstructed point clouds with different CD values.</p>
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<p>Visualization comparison of CD values for incomplete and complete point clouds using the local similarity visualization method.</p>
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<p>Direct prediction of real incomplete tree point clouds using a TC-Net trained model based on a random spherical loss pattern.</p>
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<p>Comparison results of TC-Net for every 20 epochs between the pre-trained and non-pre-trained methods.</p>
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<p>Automated LVV calculation scheme in urban areas.</p>
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<p>Experimental results of single tree segmentation from vegetation point clouds.</p>
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<p>Completion results of single tree structure based on TC-Net in TA #1.</p>
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14 pages, 4674 KiB  
Article
Machine Learning Accelerated Design of High-Temperature Ternary and Quaternary Nitride Superconductors
by Md Tohidul Islam, Qinrui Liu and Scott Broderick
Appl. Sci. 2024, 14(20), 9196; https://doi.org/10.3390/app14209196 - 10 Oct 2024
Abstract
The recent advancements in the field of superconductivity have been significantly driven by the development of nitride superconductors, particularly niobium nitride (NbN). Multicomponent nitrides offer a promising platform for achieving high-temperature superconductivity. Beyond their high superconducting transition temperature (Tc), niobium-based compounds are notable [...] Read more.
The recent advancements in the field of superconductivity have been significantly driven by the development of nitride superconductors, particularly niobium nitride (NbN). Multicomponent nitrides offer a promising platform for achieving high-temperature superconductivity. Beyond their high superconducting transition temperature (Tc), niobium-based compounds are notable for their superior superconducting and mechanical properties, making them suitable for a wide range of device applications. In this work, machine learning is used to identify ternary and quaternary nitrides, which can surpass the properties of binary NbN. Specifically, Nb0.35Ta0.23Ti0.42N shows an 84.95% improvement in Tc compared to base NbN, while the ternary composition Nb0.55Ti0.45N exhibits a 17.29% improvement. This research provides a valuable reference for the further exploration of high-temperature superconductors in diversified ternary and quaternary compositions. Full article
(This article belongs to the Special Issue Data and Text Mining: New Approaches, Achievements and Applications)
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<p>Impact of titanium substitution on NbN superconducting films. (<b>a</b>) presents critical current (Jc) as a function of the magnetic field (H) for NbN films with varying concentrations of titanium, demonstrating a decline in Jc and the critical field (Hc2) with increasing titanium content. (<b>b</b>) provides experimental data for two NbN films, one pure and the other with titanium substitution (Nb<sub>0.5</sub>Ti<sub>0.5</sub>N), detailing their respective critical temperatures (Tc) and other superconducting parameters. The measured Tc values, approximately 15 K for NbN and 15.5 K for Nb<sub>0.5</sub>Ti<sub>0.5</sub>N, indicate a slight increase with titanium addition. (Adapted with permission from [<a href="#B11-applsci-14-09196" class="html-bibr">11</a>]).</p>
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<p>Distribution and spread of Tc in the Superconductivity2018 dataset. The histogram shows the frequency distribution of Tc values across the dataset, highlighting a significant skew towards lower temperatures, with most data points concentrated below 20 K. The Kernel Density Estimate (KDE) curve (in blue) illustrates the overall shape of the distribution.</p>
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<p>Clustered heatmap of the correlation matrix for the selected features used in the machine learning models. The heatmap illustrates Pearson correlation coefficients between features, with colors representing the strength and direction of the correlations (red indicates positive correlations, blue indicates negative correlations, and white represents no significant correlation). Hierarchical clustering is applied to group features based on their correlation similarity, revealing localized clusters of highly correlated features. The feature selection process reduced multicollinearity by removing redundant features, though some moderate to high correlations remain within specific feature groups.</p>
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<p>Machine learning model performance and feature importance in predicting superconducting critical temperatures. (<b>a</b>) The scatter plot for the training dataset, with the predicted Tc plotted against the actual Tc, achieving a coefficient of determination (R<sup>2</sup>) of 0.98. (<b>b</b>) A similar scatter plot for the test dataset, achieving an R<sup>2</sup> of 0.92, indicates high accuracy of the model on unseen data. Each green square represents a data point, and the proximity of these points to the diagonal line indicates the precision of the predictions. (<b>c</b>) Feature importance bar graph, derived from the machine learning model, which ranks the relative importance of each feature in predicting Tc. Features such as average Goldschmidt volume per atom and space group show the highest importance.</p>
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<p>Actual versus predicted Tc by composition type. Each subplot represents a scatter plot for a specific type of superconducting material composition: (<b>a</b>) Oxide, (<b>b</b>) Stannide, (<b>c</b>) Telluride, (<b>d</b>) Nitride, (<b>e</b>) Fluoride, and (<b>f</b>) Sulfide. The actual Tc values (<span class="html-italic">x</span>-axis) are plotted against the predicted Tc values (<span class="html-italic">y</span>-axis), obtained from a machine learning model. Data points are represented as lime-colored squares with black edges, where each point corresponds to a material within the filtered dataset for the respective composition type. The black dashed line signifies the line of ideal prediction, illustrating where the actual and predicted Tc values would be equal.</p>
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<p>X-ray diffraction (XRD) patterns of NbN and its various elemental substitutions: Nb<sub>4</sub>Co<sub>2</sub>N, NbTaN<sub>2</sub>, NbTiN<sub>2</sub>, and pure NbN. The patterns illustrate the impact on crystallinity, phase stability, and peak intensity. The reference pattern for pure NbN shows high crystallinity and structural order.</p>
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<p>Figure illustrating the relationship between atomic radius and electronegativity for various transition metals, with a specific focus on identifying potential substitutions for Nb in the NbN. The blue scatter points represent the general population of transition metals, mapping their atomic radius against their electronegativity. In contrast, the magenta and green points highlight transition metals with lattice structures and valence electrons similar to those of Nb, respectively. The magenta points, larger and semi-transparent, denote metals with a crystal structure akin to Nb, while the green points, medium-sized and semi-transparent, indicate metals sharing Nb’s valence. Elliptical contours in green and red outline regions where elements closely adhere to Hume–Rothery rules regarding atomic size and electronegativity compatibility with Nb.</p>
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<p>Predicted variation of Tc with substitutional doping in NbN. The graph depicts the influence of the partial replacement of Nb by various other elements on the predicted Tc of nitride compounds. Each curve corresponds to a different dopant in the NbN matrix, as indicated by the legend. The x-axis represents the fraction of Nb replaced by the dopant, while the y-axis shows the predicted Tc in kelvin (K). The different symbols and colors represent various doped compounds. The peak Tc value is identified by a red arrow, which indicates the optimal doping level for the highest Tc (11.143 K at x = 0.45 for the chosen dopant).</p>
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<p>Phase diagram for predicted Tc in the Nb-Ti-Ta-N alloy system. This diagram represents the compositional dependence of the predicted Tc in the quaternary Nb-Ti-Ta-N system. The predicted Tc values are color-coded, as indicated by the gradient legend on the right, ranging from 4.7 K (blue) to 17.6 K (red).</p>
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24 pages, 738 KiB  
Article
Tensor Core-Adapted Sparse Matrix Multiplication for Accelerating Sparse Deep Neural Networks
by Yoonsang Han, Inseo Kim, Jinsung Kim and Gordon Euhyun Moon
Electronics 2024, 13(20), 3981; https://doi.org/10.3390/electronics13203981 - 10 Oct 2024
Abstract
Sparse matrix–matrix multiplication (SpMM) is essential for deep learning models and scientific computing. Recently, Tensor Cores (TCs) on GPUs, originally designed for dense matrix multiplication with mixed precision, have gained prominence. However, utilizing TCs for SpMM is challenging due to irregular memory access [...] Read more.
Sparse matrix–matrix multiplication (SpMM) is essential for deep learning models and scientific computing. Recently, Tensor Cores (TCs) on GPUs, originally designed for dense matrix multiplication with mixed precision, have gained prominence. However, utilizing TCs for SpMM is challenging due to irregular memory access patterns and a varying number of non-zero elements in a sparse matrix. To improve data locality, previous studies have proposed reordering sparse matrices before multiplication, but this adds computational overhead. In this paper, we propose Tensor Core-Adapted SpMM (TCA-SpMM), which leverages TCs without requiring matrix reordering and uses the compressed sparse row (CSR) format. To optimize TC usage, the SpMM algorithm’s dot product operation is transformed into a blocked matrix–matrix multiplication. Addressing load imbalance and minimizing data movement are critical to optimizing the SpMM kernel. Our TCA-SpMM dynamically allocates thread blocks to process multiple rows simultaneously and efficiently uses shared memory to reduce data movement. Performance results on sparse matrices from the Deep Learning Matrix Collection public dataset demonstrate that TCA-SpMM achieves up to 29.58× speedup over state-of-the-art SpMM implementations optimized with TCs. Full article
(This article belongs to the Special Issue Compiler and Hardware Design Systems for High-Performance Computing)
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<p>Illustration of SpMM using the compressed sparse row (CSR) format. The sparse matrix <span class="html-italic">S</span> is represented in CSR format, where the number of rows (<span class="html-italic">M</span>) is set to 5, and the number of columns (<span class="html-italic">K</span>) is set to 8. The number of columns (<span class="html-italic">N</span>) on dense matrix <span class="html-italic">D</span> is set to 4; thus, the size of the resulting output matrix <span class="html-italic">O</span> is <math display="inline"><semantics> <mrow> <mi>M</mi> <mo>×</mo> <mi>N</mi> </mrow> </semantics></math> = 5 × 4.</p>
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<p>The left side of this figure (<b>a</b>) illustrates fundamental concept of our approach, the transformation of vector–vector dot product into matrix–matrix multiplication via matricization. The right side of this figure (<b>b</b>) describes the transformation using the practical MMA instruction, the <math display="inline"><semantics> <mrow> <mn>16</mn> <mo>×</mo> <mn>8</mn> <mo>×</mo> <mn>8</mn> </mrow> </semantics></math> MMA.</p>
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<p>Overview of parallelization strategies for TCA-SpMM.</p>
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<p>Implementation details for TCA-SpMM. The number of warps, proportional to the number of non-zero elements, is assigned to perform the computation of multiple row vectors within a single CUDA thread block by distributing its shared memory.</p>
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<p>Comparison of the SpMM performance on sparse matrices with a different sparsity on the DLMC dataset. The dimensions of the sparse matrices (<span class="html-italic">M</span> and <span class="html-italic">K</span>) in the DLMC dataset vary for each matrix, whereas we set a fixed size of <math display="inline"><semantics> <mrow> <mi>N</mi> <mo>=</mo> <mn>256</mn> </mrow> </semantics></math> for all experiments. If we assume that the sparse matrices from the DLMC are pruned weight matrices, the value of <span class="html-italic">N</span> can be interpreted as the mini-batch size, i.e., the number of data points in each mini-batch.</p>
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<p>Distribution of MMA operations across different thread blocks in our TCA-SpMM, with and without load balancing. For this experiment, we used DLMC sparse matrices of size 512 × 512 with sparsity ranging from 90% to 98%.</p>
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19 pages, 1578 KiB  
Article
Efficacy of Food Industry By-Product β-Glucan/Chitin–Chitosan on Lipid Profile of Overweight and Obese Individuals: Sustainability and Nutraceuticals
by Victoria Santisteban, Natàlia Muñoz-Garcia, Anallely López-Yerena, Montserrat Puntes, Lina Badimon and Teresa Padro
Nutrients 2024, 16(19), 3420; https://doi.org/10.3390/nu16193420 - 9 Oct 2024
Abstract
Fat-binding nutraceutical supplements have gained considerable attention as potential cholesterol-lowering strategies to address dyslipidemia in overweight and obese individuals. This study aimed to evaluate the effects of a polysaccharide-rich compound containing β-glucan/chitin–chitosan (βGluCnCs) on lipid profiles and lipoprotein function. In a prospective, two-arm [...] Read more.
Fat-binding nutraceutical supplements have gained considerable attention as potential cholesterol-lowering strategies to address dyslipidemia in overweight and obese individuals. This study aimed to evaluate the effects of a polysaccharide-rich compound containing β-glucan/chitin–chitosan (βGluCnCs) on lipid profiles and lipoprotein function. In a prospective, two-arm clinical trial, 58 overweight and obese individuals were randomized to receive either 3 g/day of βGluCnCs or a placebo (microcrystalline cellulose) for 12 weeks. Serum lipids and lipoprotein functions were assessed at baseline and at 4-week intervals throughout the study. The administration of βGluCnCs led to a significant increase in HDL cholesterol (HDLc) levels and improved HDLc/non-HDLc and HDLc/total cholesterol (TC) ratios, while reducing apolipoprotein B (ApoB) levels (p < 0.05). However, the intervention did not affect HDL particle diameter, particle number, or lipoprotein functionality. Women demonstrated greater sensitivity to changes in HDLc during βGluCnCs supplementation, whereas men exhibited a significant reduction in ApoB levels. When stratified by baseline LDL cholesterol (LDLc) levels (cut-off: 130 mg/dL), the increase in HDLc and the ApoA1/ApoB ratio was found in the low-LDL group. In contrast, the high-LDL group experienced a significant reduction in atherogenic non-LDLc and LDLc, along with an improvement in HDL’s antioxidant capacity after βGluCnCs intervention. These changes were not statistically significant in the placebo group. In conclusion, our study demonstrated that daily supplementation with βGluCnCs significantly improved lipid profiles, with effects that varied based on sex and baseline LDLc levels. Full article
(This article belongs to the Section Nutrition in Women)
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Graphical abstract

Graphical abstract
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<p>Study design.</p>
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<p>Mean changes at weeks 4, 8 and 12 with respect to baseline (∆) of serum HDLc in the βGluCnCs and placebo groups. <span class="html-italic">p</span>-Value: Paired Samples <span class="html-italic">t</span> Test. <span class="html-italic">p</span>-Value *: Repeated measures analysis of variance. Statistical significance: <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Individual average changes at week 4, 8 and 12 with respect to baseline of serum HDLc, and ratios of HDLc/non-HDLc and HDLc/TC in women and men of βGluCnCs groups. Vertical spotted line represents the mean of the average changes at weeks 4, 8 and 12 with respect to baseline of βGluCnCs group. Table presents the mean of the average changes (mean ± SEM) at weeks 4, 8 and 12 with respect to baseline of men and women of βGluCnCs group. The arrows indicate the percentage of subjects with a positive increase in these variables. <span class="html-italic">p</span>-Value: one sample <span class="html-italic">t</span>-test. Statistical significance: <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of the βGluCnCs in HDLc and ApoA1/ApoB levels during intervention period. Line chart graphics represent mean changes at week 4, 8 and 12 with respect to baseline (∆) of serum HDLc levels of subjects with BMI lower than 30 kg/m<sup>2</sup> or BMI equal or higher than 30 kg/m<sup>2</sup> (<b>A</b>) and subjects with low-LDLc (LDLc &lt; 130 mg/dL) and high-LDLc (LDLc ≥ 130 mg/dL) levels at baseline (<b>B</b>). Bar graphic represents ApoA1/ApoB (<b>C</b>) mean change at week 12 with respect to baseline of subjects with BMI lower than 30 kg/m<sup>2</sup> and with BMI equal or higher than 30 kg/m<sup>2</sup> and subjects with baseline low-LDLc (LDLc &lt; 130 mg/dL) and high-LDLc (LDLc ≥ 130 mg/dL) levels. <span class="html-italic">p</span>-Value: one sample <span class="html-italic">t</span>-test. Statistical significance: <span class="html-italic">p</span> &lt; 0.05. <span class="html-italic">p</span>-Value *: Repeated measures analysis of variance.</p>
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<p>Association between changes in insulin concentration and HOMA-IR (given in tertiles) with HDLc levels after 12-week intervention with βGluCnCs. T1, T2 and T3 refer to the tertile levels of (<b>A</b>) plasma insulin concentration (µU/mL) and (<b>B</b>) HOMA-IR. Bars represent the change (week 12 vs. baseline) of HDLc levels by tertiles of insulin and HOMA-IR. <span class="html-italic">p</span>-Values refer to differences vs. baseline obtained by two sample paired <span class="html-italic">t</span>-test. Statistical significance: <span class="html-italic">p</span> &lt; 0.05.</p>
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23 pages, 2789 KiB  
Article
TCα-PIA: A Personalized Social Network Anonymity Scheme via Tree Clustering and α-Partial Isomorphism
by Mingmeng Zhang, Liang Chang, Yuanjing Hao, Pengao Lu and Long Li
Electronics 2024, 13(19), 3966; https://doi.org/10.3390/electronics13193966 - 9 Oct 2024
Abstract
Social networks have become integral to daily life, allowing users to connect and share information. The efficient analysis of social networks benefits fields such as epidemiology, information dissemination, marketing, and sentiment analysis. However, the direct publishing of social networks is vulnerable to privacy [...] Read more.
Social networks have become integral to daily life, allowing users to connect and share information. The efficient analysis of social networks benefits fields such as epidemiology, information dissemination, marketing, and sentiment analysis. However, the direct publishing of social networks is vulnerable to privacy attacks such as typical 1-neighborhood attacks. This attack can infer the sensitive information of private users using users’ relationships and identities. To defend against these attacks, the k-anonymity scheme is a widely used method for protecting user privacy by ensuring that each user is indistinguishable from at least k1 other users. However, this approach requires extensive modifications that compromise the utility of the anonymized graph. In addition, it applies uniform privacy protection, ignoring users’ different privacy preferences. To address the above challenges, this paper proposes an anonymity scheme called TCα-PIA (Tree Clustering and α-Partial Isomorphism Anonymization). Specifically, TCα-PIA first constructs a similarity tree to capture subgraph feature information at different levels using a novel clustering method. Then, it extracts the different privacy requirements of each user based on the node cluster. Using the privacy requirements, it employs an α-partial isomorphism-based graph structure anonymization method to achieve personalized privacy requirements for each user. Extensive experiments on four public datasets show that TCα-PIA outperforms other alternatives in balancing graph privacy and utility. Full article
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<p>An overview of TC<math display="inline"><semantics> <mi>α</mi> </semantics></math>-PIA.</p>
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<p>Example of triangles involving the node: (<b>a</b>) Original graph. (<b>b</b>) The 1-neighborhood subgraph of <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math> containing two participating triangles <math display="inline"><semantics> <mrow> <mo>(</mo> <msub> <mi>v</mi> <mn>1</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>2</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>3</mn> </msub> <mo>)</mo> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mo>(</mo> <msub> <mi>v</mi> <mn>2</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>3</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>5</mn> </msub> <mo>)</mo> </mrow> </semantics></math> and one overlapping edge <math display="inline"><semantics> <mrow> <mo>(</mo> <msub> <mi>v</mi> <mn>2</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>3</mn> </msub> <mo>)</mo> </mrow> </semantics></math>.</p>
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<p>Example of similarity tree construction (setting <span class="html-italic">k</span> = 3): (<b>a</b>) Two branches, <math display="inline"><semantics> <mrow> <mo>{</mo> <msub> <mi>v</mi> <mn>2</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>6</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>7</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>4</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>8</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>9</mn> </msub> <mo>}</mo> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mo>{</mo> <msub> <mi>v</mi> <mn>3</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>5</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>1</mn> </msub> <mo>}</mo> </mrow> </semantics></math>, where <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>3</mn> </msub> </semantics></math> have no parent nodes. (<b>b</b>) Connect the nodes <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>3</mn> </msub> </semantics></math> to the root node. (<b>c</b>) After branch unification, we obtain three independent branches, corresponding to three clusters: <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mrow> <mo>{</mo> <msub> <mi>v</mi> <mn>7</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>8</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>9</mn> </msub> <mo>}</mo> </mrow> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>2</mn> </msub> <mo>=</mo> <mrow> <mo>{</mo> <msub> <mi>v</mi> <mn>2</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>6</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>4</mn> </msub> <mo>}</mo> </mrow> </mrow> </semantics></math>, and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>3</mn> </msub> <mo>=</mo> <mrow> <mo>{</mo> <msub> <mi>v</mi> <mn>3</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>5</mn> </msub> <mo>,</mo> <msub> <mi>v</mi> <mn>1</mn> </msub> <mo>}</mo> </mrow> </mrow> </semantics></math>.</p>
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<p>Mapping relationship.</p>
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<p><math display="inline"><semantics> <mi>α</mi> </semantics></math>-partial isomorphism: (<b>a</b>) Original graph <span class="html-italic">G</span>. (<b>b</b>) Select the seed node with the largest number of neighbors and maximum <math display="inline"><semantics> <msub> <mi>α</mi> <mi>i</mi> </msub> </semantics></math> value in each cluster. (<b>c</b>) Establish the mapping relationship between the 1-neighborhood subgraph of a node and the 1-neighborhood subgraph of the seed node in each cluster. (<b>d</b>) Modify the 1-neighborhood subgraph structure of a node to achieve <math display="inline"><semantics> <msub> <mi>α</mi> <mi>i</mi> </msub> </semantics></math>-partial isomorphism by referencing the 1-neighborhood structure of the seed node. (<b>e</b>) Anonymized graph <math display="inline"><semantics> <msup> <mi>G</mi> <mo>∼</mo> </msup> </semantics></math>. (<b>f</b>) Merge the fake nodes to obtain the final anonymized graph <math display="inline"><semantics> <msup> <mi>G</mi> <mo>*</mo> </msup> </semantics></math>.</p>
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<p>Edge modification strategy: (<b>a</b>) A degree reduction/edge deletion strategy for when there is an edge between <math display="inline"><semantics> <msub> <mi>v</mi> <mn>1</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math>. (<b>b</b>) A degree reduction/edge deletion strategy for when there is no edge between <math display="inline"><semantics> <msub> <mi>v</mi> <mn>1</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math>. (<b>c</b>) A degree increase/edge addition strategy for when there is no edge between <math display="inline"><semantics> <msub> <mi>v</mi> <mn>1</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math>. (<b>d</b>) A degree increase/edge addition strategy for when there is an edge between <math display="inline"><semantics> <msub> <mi>v</mi> <mn>1</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math>. (<b>e</b>) An edge swapping strategy for when there is no edge between <math display="inline"><semantics> <msub> <mi>v</mi> <mn>1</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math>. (<b>f</b>) An edge swapping strategy for when there is an edge between <math display="inline"><semantics> <msub> <mi>v</mi> <mn>1</mn> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>v</mi> <mn>2</mn> </msub> </semantics></math>.</p>
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<p>Comparison of IL on complete graphs.</p>
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<p>Comparison of the change in ACC on complete graphs.</p>
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<p>Comparison of the change in APL on complete graphs.</p>
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<p>Comparison of the error rate of EC on complete graphs.</p>
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<p>Comparison of fake node schemes on the error rate of EC.</p>
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<p>Comparison of IL on random graphs.</p>
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<p>Comparison of the change in ACC on random graphs.</p>
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<p>Comparison of the change in APL on random graphs.</p>
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<p>Comparison of the error rate of EC on random graphs.</p>
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<p>Comparison of anonymity schemes with different clustering algorithms.</p>
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8 pages, 263 KiB  
Article
The Association of IFNL4 Gene Polymorphisms with Hepatitis B Virus (HBV) Infection in the Northern Region of Pará, Brazil
by Álesson Adam Fonseca Andrade, Carolina Cabral Angelim, Letícia Dias Martins, Amanda Roberta Vieira Sacramento, Renata Santos de Sousa, Raissa Lima Correa, Simone Regina Souza da Silva Conde, Antonio Carlos Rosário Vallinoto, Rosimar Neris Martins Feitosa and Greice de Lemos Cardoso Costa
Int. J. Mol. Sci. 2024, 25(19), 10836; https://doi.org/10.3390/ijms251910836 - 9 Oct 2024
Abstract
It is heavily suggested that one IFNL4 gene polymorphism, rs12979860 (T/C), exerts influence on the outcome of HBV infection, with the rs12979860-T allele being classified as a risk predictor, and the rs12979860-C allele being classified as a protective one. This study investigated whether [...] Read more.
It is heavily suggested that one IFNL4 gene polymorphism, rs12979860 (T/C), exerts influence on the outcome of HBV infection, with the rs12979860-T allele being classified as a risk predictor, and the rs12979860-C allele being classified as a protective one. This study investigated whether the rs12979860 IFNL4 gene polymorphism presented any association with the clinical severity for HBV carriers in an admixed population in Northern Brazil. A total of 69 samples were investigated from infected people from the city of Belém-Pará. The rs12979860-T allele was positively associated with HBV infection, suggesting a higher risk of chronicity. This research’s importance is that the polymorphism influence was investigated in a population of HBV carriers with a heterogeneous genetic profile, formed through the extensive admixture of different ethnic groups, including Europeans, Africans, and Natives with indigenous heritage. This analysis is particularly important since highly mixed populations do not always follow the same association patterns previously established by studies using populations classified as more genetically homogeneous, due to a different formation process. Full article
(This article belongs to the Section Molecular Immunology)
18 pages, 2459 KiB  
Article
Effects of Taurine and Enzymatic Cottonseed Protein Concentrate Supplementation in Low-Fishmeal Diet on Growth, Liver Antioxidant Capacity, and Intestinal Health of Golden Pompano (Trachinotus ovatus)
by Zhanzhan Wang, Shuling Liao, Zhong Huang, Jun Wang, Yun Wang, Wei Yu, Heizhao Lin, Zhenhua Ma, Zhenyan Cheng and Chuanpeng Zhou
Fishes 2024, 9(10), 405; https://doi.org/10.3390/fishes9100405 - 9 Oct 2024
Abstract
This study was conducted to investigate the impacts of the dietary addition of taurine and enzymatic cottonseed protein concentrate (ECPC) in low-fishmeal diet on the growth performance, plasma biochemical indices, hepatic antioxidant capacity, intestinal anti-inflammatory capacity, intestinal microflora, and muscle quality of golden [...] Read more.
This study was conducted to investigate the impacts of the dietary addition of taurine and enzymatic cottonseed protein concentrate (ECPC) in low-fishmeal diet on the growth performance, plasma biochemical indices, hepatic antioxidant capacity, intestinal anti-inflammatory capacity, intestinal microflora, and muscle quality of golden pompano (Trachinotus ovatus). A total of three isonitrogenous diets were given to 225 golden pompanos (5.6 ± 0.14 g). They were randomly divided into nine cages (1.0 m × 1.0 m × 1.5 m; three cages per treatment) with equal stocking numbers of twenty-five fish per cage. The results indicated that the CSM-TC group significantly increased the growth performance of juvenile T. ovatus (p < 0.05). The results indicated that compared with other groups, the addition of 1% ECPC and 0.25% taurine has been found to enhance the WGR (weight gain rate), SGR (specific growth rate), and CF (condition factor). Compared with other groups, the relative expressions of GH, GHR1, GHR2, IGF1, IGF2, and MyoG were significantly higher in fish fed with CSM-TC. The results showed that CSM-TC significantly increased the activities of alkaline phosphatase, complement 3, and complement 4 enzymes (p < 0.05). The results showed that dietary CSM-TC increased the activities of hepatic superoxide dismutase and total antioxidant capacity enzymes. Compared with other groups, the hepatic relative expressions of Nrf2, HO-1, and GSH-Px were significantly higher in fish fed with CSM-TC. The results showed that dietary CSM-TC increased the activities of intestinal chymotrypsin, lipase, and α-amylase enzymes. A CSM-TC diet significantly increased the relative expressions of IL-10, ZO-1, Occludin, Claudin-3, and Claudin-15 (p < 0.05). The results showed that CSM-C significantly increased the index of Ace and Chao1 (p < 0.05). In conclusion, a high-fermented cottonseed meal diet can have detrimental effects on physiological health in golden pompano, while adding 1% ECPC and 0.25% taurine can improve hepatic and intestinal health via attenuating inflammation and oxidative stress. Full article
(This article belongs to the Section Nutrition and Feeding)
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<p>Relative mRNA expressions of golden pompano fed with the experimental diets in muscle. The data include triplicate means. Means in the same row that have distinct superscript letters are substantially different, as determined by Duncan’s test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Relative mRNA expressions of antioxidant-related genes of golden pompano fed with the experimental diets in hepatic. The data include triplicate means. Means in the same row that have distinct superscript letters are substantially different, as determined by Duncan’s test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Relative mRNA expressions of immune-related and physical barrier-related genes of golden pompano fed with the experimental diets in intestinal. The data include triplicate means. Means in the same row that have distinct superscript letters are substantially different, as determined by Duncan’s test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Venus map of OTUs of the intestinal flora of golden pompano fed with the experimental diets. The data include triplicate means. Means in the same row that have distinct superscript letters are substantially different, as determined by Duncan’s test (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Heatmap of phylum of the intestinal flora of golden pompano fed with the experimental diets.</p>
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<p>Heatmap of the genera of the intestinal flora of golden pompano fed with the experimental diets.</p>
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19 pages, 17017 KiB  
Article
Study on the Influence of Tip Clearance on Working Characteristics of High-Altitude Fan
by Wei Qu, Xiaohui He, Chunlian Duan, Yumei Qin, Zeqing He and Yanchu Yang
Aerospace 2024, 11(10), 823; https://doi.org/10.3390/aerospace11100823 - 8 Oct 2024
Abstract
To study the influence of tip clearance on the working characteristics of high-altitude fans, this paper takes the MIX-140 high-altitude fan as the research object. Five different tip clearance (TC) models are selected. The CFD method is used to analyze the changes in [...] Read more.
To study the influence of tip clearance on the working characteristics of high-altitude fans, this paper takes the MIX-140 high-altitude fan as the research object. Five different tip clearance (TC) models are selected. The CFD method is used to analyze the changes in the working characteristics of the fan under different flow rates and TCs in ground and high-altitude environments. The reliability of the numerical method is verified through a fan test bench. The results show that the tip leakage flow caused by the TC will continuously deteriorate the working characteristics of the fan. Under the rated flow rate in the ground environment, for every doubling of the blade’s TC, the static pressure difference will decrease by 5%, the efficiency will decrease by 2%, and the power will decrease by 3%. In a high-altitude environment, the flow rate corresponding to the maximum shaft power point of the fan will continuously increase with an increase in the tip clearance, which will bring about additional energy consumption. For high-altitude fans, the deformation caused by the high-speed rotation of the impeller needs to be taken into account. Undoubtedly, it is advantageous to choose the smallest possible tip clearance value. The results of the analysis and test methods in this paper will provide a basis for designing the tip clearance of high-altitude fans. Full article
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<p>MIX-140 high-altitude fan. (<b>a</b>) Physical picture; (<b>b</b>) cut view.</p>
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<p>Computational domain.</p>
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<p>Computational mesh.</p>
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<p>Q-∆p curves.</p>
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<p>Q-η curves (under ground environment).</p>
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<p>Q-<math display="inline"><semantics> <mrow> <mi>W</mi> </mrow> </semantics></math> curves (under ground environment).</p>
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<p>Cloud maps of streamline and velocity distribution: (<b>a</b>) 0.3 mm TC; (<b>b</b>) 1.5 mm TC.</p>
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<p>Cloud map of streamline and flow distribution under a 0.6 mm TC: (<b>a</b>) 0.4 Q; (<b>b</b>) 0.8 Q; (<b>c</b>) 1.0 Q; (<b>d</b>) 1.4 Q.</p>
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<p>Q-<math display="inline"><semantics> <mrow> <mo>∆</mo> <mi>p</mi> </mrow> </semantics></math> curves (under high-altitude environment).</p>
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<p>Q-<math display="inline"><semantics> <mrow> <mi>η</mi> </mrow> </semantics></math> curves.</p>
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<p>Q-W curves (under high-altitude environment).</p>
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<p>Cloud maps of streamline and flow velocity under different TCs (under 0.8 Q): (<b>a</b>) 0.3 mm TC; (<b>b</b>) 0.6 mm TC; (<b>c</b>) 0.9 mm TC; (<b>d</b>) 1.2 mm TC; (<b>e</b>) 1.5 mm TC.</p>
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<p>Cloud maps of streamline and flow velocity under different TCs (under 1.2 Q): (<b>a</b>) 0.3 mm TC; (<b>b</b>) 0.6 mm TC; (<b>c</b>) 0.9 mm TC; (<b>d</b>) 1.2 mm TC; (<b>e</b>) 1.5 mm TC.</p>
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<p>Q-<math display="inline"><semantics> <mrow> <mi>γ</mi> </mrow> </semantics></math> curves.</p>
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<p>Cloud maps of streamline and flow velocity under different values of Q (TC = 0.6 mm): (<b>a</b>) 0.8 Q; (<b>b</b>) 1.0 Q; (<b>c</b>) 1.4 Q; (<b>d</b>) 1.6 Q.</p>
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<p>Static pressure variation curves in streamwise location under different TCs: (<b>a</b>) 0.6 Q; (<b>b</b>) 0.8 Q; (<b>c</b>) 1.0 Q; (<b>d</b>) 1.2 Q.</p>
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<p>Rubbing marks on the impeller cover.</p>
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<p>Nephograms of impeller deformation under different environments: (<b>a</b>) 20 km, 26,000 r/min; (<b>b</b>) 0 km, 10,000 r/min.</p>
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<p>Nephograms of impeller equivalent stress under different environments: (<b>a</b>) 20 km, 26,000 r/min; (<b>b</b>) 0 km, 10,000 r/min.</p>
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<p>Deformation–speed curves.</p>
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<p>(<b>a</b>) Fan performance test bench; (<b>b</b>) MIX-140 fan impeller.</p>
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<p>Ground performance curve for fan.</p>
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<p>Tethered balloon and MIX-140 fan.</p>
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<p>Flight altitude–balloon pressure and fan status.</p>
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<p>Scaled balloon test bench.</p>
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<p>Fan speed and pressure.</p>
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