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12 pages, 9997 KiB  
Article
Molecular Characterization of the MoxR AAA+ ATPase of Synechococcus sp. Strain NKBG15041c
by Kota Mano, Kentaro Noi, Kumiko Oe, Takahiro Mochizuki, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama, Keiichi Noguchi, Kyosuke Shinohara, Masafumi Yohda and Akiyo Yamada
Int. J. Mol. Sci. 2024, 25(18), 9955; https://doi.org/10.3390/ijms25189955 (registering DOI) - 15 Sep 2024
Abstract
We isolated a stress-tolerance-related gene from a genome library of Synechococcus sp. NKBG15041c. The expression of the gene in E. coli confers resistance against various stresses. The gene encodes a MoxR AAA+ ATPase, which was designated SyMRP since it belongs to the MRP [...] Read more.
We isolated a stress-tolerance-related gene from a genome library of Synechococcus sp. NKBG15041c. The expression of the gene in E. coli confers resistance against various stresses. The gene encodes a MoxR AAA+ ATPase, which was designated SyMRP since it belongs to the MRP subfamily. The recombinant SyMRP showed weak ATPase activity and protected citrate synthase from thermal aggregation. Interestingly, the chaperone activity of SyMRP is ATP-dependent. SyMRP exists as a stable hexamer, and ATP-dependent conformation changes were not detected via analytical ultracentrifugation (AUC) or small-angle X-ray scattering (SAXS). Although the hexameric structure predicted by AlphaFold 3 was the canonical flat-ring structure, the structures observed by atomic force microscopy (AFM) and transmission electron microscopy (TEM) were not the canonical ring structure. In addition, the experimental SAXS profiles did not show a peak that should exist in the symmetric-ring structure. Therefore, SyMRP seems to form a hexameric structure different from the canonical hexameric structure of AAA+ ATPase. Full article
(This article belongs to the Section Molecular Microbiology)
Show Figures

Figure 1

Figure 1
<p>Amino acid sequence alignment (<b>a</b>) and phylogenetic tree of SyMRP (<b>b</b>). Amino acid sequence alignments were performed via ClustalOmega. A phylogenetic tree was generated by iTOL.</p>
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<p>Effects of SyMRP on the growth of <span class="html-italic">E. coli</span> under various stress conditions. (<b>a</b>–<b>d</b>) Growth curves under various stress conditions. (<b>a</b>) Nonstress condition. (<b>b</b>) Salt stress condition (1.0 M NaCl). (<b>c</b>) Acid stress condition (pH 4.0). (<b>d</b>) Thermal stress condition (45 °C). Red circle: pSK-SyMRP; blue circle: pSK-BAA10517; black: vector control. (<b>e</b>–<b>g</b>) Spot tests. 1: pSK-SyMRP, 2: pSK-BAA10517, 3: vector control. (<b>e</b>) Nonstress condition. (<b>f</b>) Salt stress condition (0.8 M NaCl). (<b>g</b>) Thermal stress condition (50 °C, 30 min).</p>
Full article ">Figure 2 Cont.
<p>Effects of SyMRP on the growth of <span class="html-italic">E. coli</span> under various stress conditions. (<b>a</b>–<b>d</b>) Growth curves under various stress conditions. (<b>a</b>) Nonstress condition. (<b>b</b>) Salt stress condition (1.0 M NaCl). (<b>c</b>) Acid stress condition (pH 4.0). (<b>d</b>) Thermal stress condition (45 °C). Red circle: pSK-SyMRP; blue circle: pSK-BAA10517; black: vector control. (<b>e</b>–<b>g</b>) Spot tests. 1: pSK-SyMRP, 2: pSK-BAA10517, 3: vector control. (<b>e</b>) Nonstress condition. (<b>f</b>) Salt stress condition (0.8 M NaCl). (<b>g</b>) Thermal stress condition (50 °C, 30 min).</p>
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<p>Chaperone function of SyMRP. The thermal aggregation of CS from the porcine heart was monitored by measuring light scattering at 500 nm with a spectrofluorometer at 43 °C. CS (0.1 µM, monomer) was incubated in assay buffer with or without SyMRP and BSA at the specified concentration. To examine their effects, 1 mM ATP (<b>a</b>) or ADP (<b>b</b>) was added.</p>
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<p>AUC results of SyMRP solutions at 25 °C. The red and blue lines show the concentration distributions of molecules as a function of the sedimentation coefficient for the solutions without and with ATP, respectively.</p>
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<p>SAXS profiles of SyMRP solutions at 25 °C. The red and blue circles show the SAXS profiles of the solutions without and with ATP, respectively. The solid black line indicates the calculated scattering profile for the hexameric model predicted by AlphaFold 3. The arrow represents the peak for the calculated scattering profile at <span class="html-italic">q</span> ~ 0.2 Å<sup>−1</sup>.</p>
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<p>Hexameric structure of SyMRP predicted by AlphaFold 3. (<b>a</b>) Top view, (<b>b</b>) side view.</p>
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<p>AFM and TM images of SyMRP. (<b>a</b>) Images of small oligomers observed by AFM. (<b>b</b>) Image of probable hexamers observed by TEM (<b>top</b>) and AFM (<b>bottom</b>).</p>
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19 pages, 520 KiB  
Article
Influence of Educational Measures on Emotional Adjustment in Students with and without Specific Learning Difficulties according to Gender
by Isaías Martín-Ruiz, María-José Robles-Sánchez and Agustín Wallace
Soc. Sci. 2024, 13(9), 488; https://doi.org/10.3390/socsci13090488 (registering DOI) - 14 Sep 2024
Viewed by 270
Abstract
The prevalence of mental health problems in adolescence is high, and it would appear that certain conditioning factors such as having a Specific Learning Disability (SpLD), the application of educational measures (repeating a school year), or gender can have an impact on the [...] Read more.
The prevalence of mental health problems in adolescence is high, and it would appear that certain conditioning factors such as having a Specific Learning Disability (SpLD), the application of educational measures (repeating a school year), or gender can have an impact on the socioemotional development of adolescents. However, we do not yet have a clear picture of the role played by each variable or whether there are interactions between them. Therefore, the objective of this study is to analyse the effect of these independent variables on internalising problems (anxiety and depression) and on personal resources (self-esteem, social competence, and awareness of the problem). The sample is composed of 80 students, 40 with SpLD and 40 control, aged between 12 and 17 years old, matched in terms of age and gender. The results indicate that the variables Specific Learning Disabilities and educational measures have a negative impact on internalising problems and personal resources of adolescents, while there is no significant effect with respect to gender. In addition, we identified interactions between having SpLD and being held back a year. We therefore call into question the negative impact of repeating a school year according to the condition. Full article
12 pages, 725 KiB  
Article
Nematodes Can Substitute Artemia in a Co-Feeding Regime for Pacific White Shrimp Post-Larvae Reared in a Biofloc Nursery System
by Nils Phillip Sommer, Mateus Aranha Martins, Priscila Costa Rezende, Walter Quadros Seiffert, Laurent H. Seychelles, Cláudia Aragão and Felipe Boéchat Vieira
Animals 2024, 14(18), 2679; https://doi.org/10.3390/ani14182679 (registering DOI) - 14 Sep 2024
Viewed by 229
Abstract
This study evaluated nematodes as an alternative to live Artemia when provided in a co-feeding regime to Pacific white shrimp (Penaeus vannamei) post-larvae (PL) reared in a biofloc nursery system. A 20-day experiment employing PL11 was performed for an evaluation [...] Read more.
This study evaluated nematodes as an alternative to live Artemia when provided in a co-feeding regime to Pacific white shrimp (Penaeus vannamei) post-larvae (PL) reared in a biofloc nursery system. A 20-day experiment employing PL11 was performed for an evaluation of four dietary groups: control [C] (fed exclusively with a dry commercial feed); artificial Artemia [AA] (dry feed composed of extracted and processed Artemia cysts and dry commercial feed); live Artemia and dry commercial feed [LA]; and nematodes and dry commercial feed [N] (Panagrolaimus sp. dry nematodes). The diets were provided twice a day, with the remaining six feed provisions being a commercial dry feed for all experimental groups. A biofloc system was chosen as it offers a potentially sustainable approach to intensive shrimp farming. Alkalinity and pH in the [N] group were significantly higher in the last 5 days of the experiment (p < 0.05), likely causing the significantly lower nitrite levels observed in that same group (p < 0.05). Total and volatile suspended solids were significantly lower in the two live feed groups when compared with [C] and [AA] (p < 0.05). Although PL fed the dry diets exhibited higher growth rates (p < 0.05), the [N] and [LA] groups presented significantly higher final survivals (p < 0.05). No differences were found for survival after a salinity stress test (p ≥ 0.05). These results suggest that nematodes can successfully substitute Artemia in a co-feeding regime for P. vannamei PL reared in biofloc nursery systems. Full article
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Figure 1
<p>Alkalinity, pH, total suspended solids (TSSs), volatile suspended solids (VSSs), total ammonia nitrogen (TAN), and nitrite concentrations of a biofloc nursery system for the rearing of <span class="html-italic">Penaeus vannamei</span> post-larvae fed different dietary treatments (C: control dry feed; AA: artificial <span class="html-italic">Artemia</span>; LA: live <span class="html-italic">Artemia</span>; and N: nematodes) in a co-feeding regime. Data presented as mean ± standard deviation. Different letters between treatments within any given sampling day indicate statistically significant differences by Tukey’s test (<span class="html-italic">p</span> &lt; 0.05). The absence of letters indicates no significant differences (<span class="html-italic">p</span> &gt; 0.05).</p>
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33 pages, 582 KiB  
Article
Forecasting the CBOE VIX and SKEW Indices Using Heterogeneous Autoregressive Models
by Massimo Guidolin and Giulia F. Panzeri
Forecasting 2024, 6(3), 782-814; https://doi.org/10.3390/forecast6030040 (registering DOI) - 14 Sep 2024
Viewed by 159
Abstract
We analyze the predictability of daily data on the CBOE VIX and SKEW indices, used to capture the average level of risk-neutral risk and downside risk, respectively, as implied by S&P 500 index options. In particular, we use [...] Read more.
We analyze the predictability of daily data on the CBOE VIX and SKEW indices, used to capture the average level of risk-neutral risk and downside risk, respectively, as implied by S&P 500 index options. In particular, we use forecast models from the Heterogeneous Autoregressive (HAR) class to test whether and how lagged values of the VIX and of the SKEW may increase the forecasting power of HAR for the SKEW and the VIX. We find that a simple HAR is very hard to beat in out-of-sample experiments aimed at forecasting the VIX. In the case of the SKEW, the benchmarks (the random walk and an AR(1)) are clearly outperformed by HAR models at all the forecast horizons considered and there is evidence that special definitions of the SKEW index based on put options data only yield superior forecasts at all horizons. Full article
(This article belongs to the Section Forecasting in Economics and Management)
15 pages, 298 KiB  
Article
Psychological Risk Factors in the Transition from Suicidal Ideation to Suicidal Behavior in Young Adults
by Elif Yöyen and Merve Keleş
Healthcare 2024, 12(18), 1850; https://doi.org/10.3390/healthcare12181850 (registering DOI) - 14 Sep 2024
Viewed by 210
Abstract
Background: Suicidal behaviour, defined as acting with the intention of killing oneself and thinking about doing so, is a serious public health problem. Being able to list the risk factors in the process from suicidal ideation to suicidal behaviour is important in preventing [...] Read more.
Background: Suicidal behaviour, defined as acting with the intention of killing oneself and thinking about doing so, is a serious public health problem. Being able to list the risk factors in the process from suicidal ideation to suicidal behaviour is important in preventing suicide. Objectives: The study was conducted to examine the psychological variables that discriminate between individuals who attempt suicide and those who only have suicidal ideation. Methods: The sample of the study consisted of 108 individuals who attempted suicide and 197 individuals with suicidal ideation, aged 18–25 years. Data were collected using the Demographic Information Form, Anger/Impulsivity (A/I) and Hopelessness/Loneliness (H/L) subscales of the Suicide Probability Scale (SPS), Psychological Pain Scale (PPS), State and Trait Anxiety Scale (STAS), Beck Depression Inventory (BDI), Interpersonal Needs Questionnaire (INQ), Acquired Suicide Efficacy/Death Fearlessness Scale (ASE/DFS) and General Attitudes and Beliefs Scale Short Form (GABS-SF). Results: Results showed that anger/impulsivity (Wald = 4.827; p < 0.05), perceived burden on others (Wald = 8.613; p < 0.05), acquired suicide efficacy/death fearlessness (Wald = 13.377; p < 0.001), being female (Wald = 3.925; p < 0.05), presence of diagnosed psychiatric illness in the family (Wald = 5.705; p < 0.05), and receiving psychological support (Wald = 4.381. p < 0.05) variables are significant predictors of the transition from suicidal ideation to suicidal action. Conclusions: The identification of psychological factors between suicide attempters and suicide ideation groups may guide clinicians in the follow-up and treatment of individuals at risk of attempting suicide. In addition, the results may contribute to the development of new intervention, education and treatment programmes for suicide. Full article
(This article belongs to the Special Issue Suicide Prevention among Adolescents)
22 pages, 2906 KiB  
Article
Neutralizing Nanobodies against Venoms from Naja haje Species Captured in North Africa
by Hiba Mejri, Rym Mokrani, Ayoub Ksouri, Mabrouk Seddik, Nour Awad, Gabriel Ayme, Thouraya Chagour, Ahlem Mokrani, Charraf eddine Louchene, Imed Salhi, Rahma Ben Abderrazek, Rym Ben Khalifa, Zakaria Benlasfar, Pierre-Jean Corringer, Mohamed Hammadi, Selma Djilani, Pierre Lafaye and Balkiss Bouhaouala-Zahar
Toxins 2024, 16(9), 393; https://doi.org/10.3390/toxins16090393 (registering DOI) - 14 Sep 2024
Viewed by 276
Abstract
Snakebite envenoming (SBE) remains a severely neglected public health issue, particularly affecting tropical and subtropical regions, with Africa experiencing an estimated 435,000 to 580,000 snakebites annually, leading to high morbidity and mortality rates, especially across Africa and Asia. Recognized as a Neglected Tropical [...] Read more.
Snakebite envenoming (SBE) remains a severely neglected public health issue, particularly affecting tropical and subtropical regions, with Africa experiencing an estimated 435,000 to 580,000 snakebites annually, leading to high morbidity and mortality rates, especially across Africa and Asia. Recognized as a Neglected Tropical Disease, SBE management is further complicated by the inadequate efficacy of current antivenom treatments. Of particular concern are cobras (Naja sp.), whose neurotoxins can induce rapid fatal respiratory paralysis. In this study, we investigate the potential of nanobodies as a promising next-generation of immunotherapeutics against cobra venoms. Through a dual strategy of the characterization of venom toxic fractions from cobras captured for the first time in Algeria and Tunisia biotopes, coupled with in vitro assays to evaluate their interactions with acetylcholine receptors, and subsequent immunization of dromedaries to produce specific nanobodies, we identified two lethal fractions, F5 and F6, from each venom, and selected five nanobodies with significant binding and neutralizing of 3DL50 (0.74 mg/kg). The combination of these nanobodies demonstrated a synergistic effect, reaching 100% neutralizing efficacy of 2DL50 lethal venom fraction (0.88 mg/kg) doses in mice. Additionally, our findings highlighted the complex mechanism of cobra venom action through the lethal synergism among its major toxins. Full article
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Figure 1

Figure 1
<p>Size exclusion chromatography (SEC) profiles of <span class="html-italic">Naja haje</span> cobra venom extracts and estimation of main protein fractions. (<b>a</b>) Size exclusion chromatography of Nht venom with glacial acetic acid elution; (<b>b</b>) size exclusion chromatography of Nha venom with ammonium acetate elution.</p>
Full article ">Figure 1 Cont.
<p>Size exclusion chromatography (SEC) profiles of <span class="html-italic">Naja haje</span> cobra venom extracts and estimation of main protein fractions. (<b>a</b>) Size exclusion chromatography of Nht venom with glacial acetic acid elution; (<b>b</b>) size exclusion chromatography of Nha venom with ammonium acetate elution.</p>
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<p>Analysis of Nht venom fractions via capillary electrophoresis, using an Agilent 2100 Bioanalyzer with a Protein 80 Kit: (<b>a</b>) Electropherogram of the Nht crude venom; (<b>b</b>) Electropherogram of NhtF5; (<b>c</b>) Electropherogram of NhtF6. The separation of proteins is shown within the molecular weight range of 1.6 to 95 kDa.</p>
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<p>Binding capacity of the 18 selected nanobodies towards NhtF5/NhtF6 toxins determined by ELISA, in standardized conditions.</p>
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<p>Specificity of NhtF5 and NhtF6 toxic fractions of cobra venom towards nAChRs subtypes. (<b>a</b>) Specificity of NhtF5 (100 nM) and NhtF6 (100 nM) towards (α1)<sub>2</sub>β1δε-nAChRs (muscle-type); (<b>b</b>) Specificity of NhtF5 (100 nM) and NhtF6 (100 nM) towards α7-nAChRs ECD (extracellular domain); (<b>c</b>) Dose–Response curve (IC50) of NhtF5 and NhtF6 towards (α1)<sub>2</sub>β1δε-nAChRs using I<sup>125</sup>α-Bungarotoxin (α-Bgtx). Statistical significance is denoted as ***: <span class="html-italic">p</span> &lt; 0.001, ns: <span class="html-italic">p</span> &gt; 0.05.</p>
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<p>(<b>a</b>) Nanobody–(α1)<sub>2</sub>β1δε-nAChRs receptors’ binding affinity; (<b>b</b>) Nanobody-α7-nAChRs ECD receptors’ binding affinity; (<b>c</b>) ELISA evaluation of nanobody binding affinity to α-Bungarotoxin. ELISA plates were coated with α-bungarotoxin at a concentration of 1 µg/mL. Six nanobodies, initially at 10 µg/mL, were serially diluted and applied to assess binding affinity. Optical density was measured at 492 nm, to quantify the interaction between each nanobody and α-bungarotoxin. Statistical significance is denoted as ***: <span class="html-italic">p</span> &lt; 0.001 and ****: <span class="html-italic">p</span> &lt; 0.0001.</p>
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<p>Map of the region from where Nh was collected. (<b>a</b>) Mareth, Tunisia; (<b>b</b>) Ghardaia, Algeria.</p>
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16 pages, 2699 KiB  
Article
Natural Bacterial Co-Infection in Farmed European Sea Bass Intended for Experimental Research in Sicily, Southern Italy: Pathological Findings
by Simone Palazzolo, Claudio Gervasi, Jessica Maria Abbate, Emil Gjurčević, Rosa Falleti, Maria Giovanna Piro, Giovanni Lanteri, Carmelo Iaria and Fabio Marino
Fishes 2024, 9(9), 360; https://doi.org/10.3390/fishes9090360 (registering DOI) - 13 Sep 2024
Viewed by 190
Abstract
In mariculture facilities, bacterial infections pose significant production challenges, with potentially catastrophic impacts on fish species. Bacterial co-infections are a widespread phenomenon in the natural marine environment, although their impact on aquatic organisms remains poorly investigated. This study aimed to detail the pathological [...] Read more.
In mariculture facilities, bacterial infections pose significant production challenges, with potentially catastrophic impacts on fish species. Bacterial co-infections are a widespread phenomenon in the natural marine environment, although their impact on aquatic organisms remains poorly investigated. This study aimed to detail the pathological findings associated with a natural bacterial co-infection caused by three different pathogens, namely Photobacterium damselae subsp. piscicida, Tenacibaculum maritimum and Vibrio sp., as the cause of mass mortality in European sea bass. The fish had been reared in open-net cages in Sicily and later transferred for experimental research purposes to a user establishment after immunization with an inactivated vaccine. Macroscopic, cytological and histopathological examinations were performed on 109 animals, and bacterial species were identified by the 16S rRNA gene. Overall, ulcerative skin lesions, necrotizing myositis and tail rot with occasional tail loss were associated with tenacibaculosis and vibriosis, while P. damselae subsp. piscicida mainly caused granulomatous inflammation in the spleen and head kidney. Finally, an injection site reaction due to the oil-adjuvanted vaccine administered intraperitoneally was observed in the abdominal fat. Understanding the impact of bacterial pathogens is essential to manage the health and welfare of farmed fish, and the importance of a good health monitoring program cannot be overstated to avoid outbreaks and the possible emergence of new pathogens due to the intensification of the production systems, antibiotic resistance and climate changes. The study would also highlight the importance of the quarantine period when animals supplied for research come from aquaculture farms and how the main goal in the near future should be to better define the procedures to provide completely pathogen-free animals. Full article
(This article belongs to the Section Welfare, Health and Disease)
24 pages, 5700 KiB  
Article
Temporal Scales of Mass Wasting Sedimentation across the Mississippi River Delta Front Delineated by 210Pb/137Cs Geochronology
by Jeffrey Duxbury, Samuel J. Bentley, Kehui Xu and Navid H. Jafari
J. Mar. Sci. Eng. 2024, 12(9), 1644; https://doi.org/10.3390/jmse12091644 - 13 Sep 2024
Viewed by 322
Abstract
The Mississippi River Delta Front (MRDF) is a subaqueous apron of rapidly deposited and weakly consolidated sediment extending from the subaerial portions of the Birdsfoot Delta of the Mississippi River, long characterized by mass-wasting sediment transport. Four (4) depositional environments dominate regionally (an [...] Read more.
The Mississippi River Delta Front (MRDF) is a subaqueous apron of rapidly deposited and weakly consolidated sediment extending from the subaerial portions of the Birdsfoot Delta of the Mississippi River, long characterized by mass-wasting sediment transport. Four (4) depositional environments dominate regionally (an undisturbed topset apron, mudflow gully, mudflow lobe, and prodelta), centering around mudflow distribution initiated by a variety of factors (hurricanes, storms, and fluid pressure). To better understand the spatiotemporal scales of the events as well as the controlling processes, eight cores (5.8–8.0 m long) taken offshore from the South Pass (SP) and the Southwest Pass (SWP) were analyzed for gamma density, grain size, sediment fabric (X-radiography), and geochronology (210Pb/137Cs radionuclides). Previous work has focused on the deposition of individual passes and has been restricted to <3 m core penetration, limiting its geochronologic completeness. Building on other recent studies, within the mudflow gully and lobe cores, the homogeneous stepped profiles of 210Pb activities and the corresponding decreased gamma density indicate the presence of gravity-driven mass failures. 210Pb/137Cs indicates that gully sedimentary sediment accumulation since 1953 is greater than 580 cm (sediment accumulation rate [SAR] of 12.8 cm/y) in the southwest pass site, and a lower SAR of the South Pass gully sites (2.6 cm/y). This study shows that (1) recent dated mudflow deposits are identifiable in both the SWP and SP; (2) SWP mudflows have return periods of 10.7 y, six times more frequent than at the SP (66.7 y); (3) 210Pb inventories display higher levels in the SWP area, with the highest focusing factors in proximal/gully sedimentation, and (4) submarine landslides in both study areas remain important for sediment transport despite the differences in sediment delivery and discharge source proximity. Full article
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Figure 1

Figure 1
<p>Map outlining the Mississippi River Delta Front (MRDF) study site in vicinity of the “birds’ foot”, (<b>a</b>) displaying the subaerial and subaqueous bathymetry with study sites outlined in red. (<b>b</b>) The Southwest Pass and (<b>c</b>) the South Pass display piston core locations, with black dots and dotted lines outlining a select gully–lobe complex within each. Bathymetry is from Baldwin et al. (2018) [<a href="#B3-jmse-12-01644" class="html-bibr">3</a>], imagery is open source “world imagery” from ESRI.</p>
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<p>Delta front seafloor diagram (adapted from Coleman et al. 1980 [<a href="#B1-jmse-12-01644" class="html-bibr">1</a>]) outlining major morphological features of the study sites. Upper, intermediate, and lower zones of the environment range from 20 to 300 m in depth and feature incising gullies coalescing into mudflow lobes downslope overlying earlier, Holocene-aged deposits [<a href="#B14-jmse-12-01644" class="html-bibr">14</a>].</p>
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<p>Downcore physical property profiles for piston cores. Gamma density (solid), porosity (dashed), and mean grain size (phi units in black dots with error bars showing standard deviation) are laid out for the Southwest Pass (<b>top</b>) and South Pass (<b>bottom</b>), ordered by depositional environment.</p>
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<p>Diagnostic X-radiography for each of the depositional environments showing common fabrics present within cores. Red lines indicate possible unconformity locations. By core, (<b>a</b>) PS17-03 undisturbed topset apron with laminated bedding present throughout; (<b>b</b>) PS17-06, a mudflow gully core with large amounts of biogenic gas expansion exacerbated by desiccation with no visible bedding beside an unconformity separating two homogenous layers; (<b>c</b>) mudflow lobe core PS17-07, showing biogenic gas voids below an unconformity; (<b>d</b>) prodelta core PS17-09, with cm-scale sandy layers and abundant burrowing throughout; (<b>e</b>) PS17-24, a mudflow gully core from the South Pass showing a possible unconformity with angled bedding below and homogenous above.</p>
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<p>Depositional mechanism interpretation displayed over stratigraphic profile, gamma density, and <sup>210</sup>Pb/<sup>137</sup>Cs profiles by pass.</p>
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<p>CHIRP seismic profiles parallel to shore, progressing distally (<b>A</b>–<b>C</b>) and perpendicular (<b>D</b>), outlined as tracts with corresponding A’–D’ in <a href="#jmse-12-01644-f001" class="html-fig">Figure 1</a>. Identified depositional environments are listed on each transect down to observable seismic basement.</p>
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<p>Depositional environment analysis. (<b>a</b>) Relative composition of cores by sedimentation mechanism, (<b>b</b>) accumulation rates by depositional environments, (<b>c</b>) calculated mudflow return period (years) by depositional environment.</p>
Full article ">Figure 8
<p>Site-wide radioisotope analysis with (<b>a</b>) <sup>210</sup>Pb radioisotope inventories (<b>top</b>) and (<b>b</b>) <sup>210</sup>Pb index analysis by depositional environment. Concentrations of <sup>210</sup>Pb show preferential deposition in the undisturbed and gully cores of the Southwest Pass.</p>
Full article ">Figure 9
<p>Timeseries of major forcing events (floods/hurricanes/dams) plotted along estimated mudflow occurrence dates by core. Major hurricane occurrences were referenced from the NOAA Historical Hurricane Tracker as category 3+ hurricanes with tracks within 70 miles of the Head of Passes. High-risk hurricanes are those described by Guidroz (2009) [<a href="#B12-jmse-12-01644" class="html-bibr">12</a>], and other focused river discharge (Talbert’s Landing) are referenced from the River Gauges Database (USACE). The first occurrence of <sup>137</sup>Cs (1953) forms a backstop for cores PS17-09, PS17-24, and PS17-30 and a forestop in PS17-03. The arrows indicate the South Pass depositional hiatus of hypopycnal deposition at much lower rates to the base of the core (listed in <a href="#jmse-12-01644-t001" class="html-table">Table 1</a>). Asterix (*) indicates calculation based off of <sup>137</sup>Cs due to the full penetration.</p>
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12 pages, 2248 KiB  
Article
Differential Expression Analysis Reveals Possible New Quaternary Ammonium Compound Resistance Gene in Highly Resistant Serratia sp. HRI
by Samantha McCarlie, Charlotte Boucher-van Jaarsveld and Robert Bragg
Microorganisms 2024, 12(9), 1891; https://doi.org/10.3390/microorganisms12091891 - 13 Sep 2024
Viewed by 357
Abstract
During the COVID-19 pandemic, the surge in disinfectant use emphasised their pivotal role in infection control. While the majority of antimicrobial resistance research focuses on antibiotics, resistance to biocides, which are present in disinfectants and sanitisers, is escalating. Serratia sp. HRI is a [...] Read more.
During the COVID-19 pandemic, the surge in disinfectant use emphasised their pivotal role in infection control. While the majority of antimicrobial resistance research focuses on antibiotics, resistance to biocides, which are present in disinfectants and sanitisers, is escalating. Serratia sp. HRI is a highly resistant isolate, and through the study of this organism, the molecular mechanisms of resistance may be uncovered. Serratia sp. HRI was treated with the disinfectant benzalkonium chloride in preparation for RNA sequencing. Through mining of the RNA-Seq differential expression data, an uncharacterised Major Facilitator Superfamily (MFS) efflux pump gene was found to be up-regulated at least four-fold at four different time points of exposure. Real-time PCR revealed this uncharacterised MFS efflux gene was up-regulated after exposure to benzalkonium chloride and two additional disinfectants, didecyldimethylammonium chloride (DDAC) and VirukillTM. Additionally, expression of this gene was found to be higher at 20 min versus 90 min of exposure, indicating that the up-regulation of this gene is an initial response to biocide treatment that decreases over time. This suggests that MFS efflux pumps may be an initial survival mechanism for microorganisms, allowing time for longer-term resistance mechanisms. This work puts forward a novel biocide resistance gene that could have a major impact on biocide susceptibility and resistance. Full article
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<p>Total RNA extracts visualised on an agarose gel during the RNA extraction optimisation representing the 23s rRNA and 16s rRNA from each sample.</p>
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<p>RNA-Seq differential expression heatmaps compared to the untreated control at four time points. Each line represents a gene: black indicates no differential expression; red indicates an up-regulation; green indicates down-regulation of a gene.</p>
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<p>RNA-Seq differential expression heatmaps of the treated samples at different time points. Each line represents a gene: black indicates no differential expression; red indicates an up-regulation; green indicates down-regulation of a gene.</p>
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<p>Successful amplification of the uncharacterised MFS efflux pump (UMFS1) target gene from the pooled cDNA biological replicates with the designed primers with no visible non-specific binding. Lane 1: untreated/control pooled sample; Lane 2: BC 20 pooled sample, Lane 3: BC90 pooled sample; Lane 4: DDAC pooled sample; Lane 5: Virukill<sup>TM</sup> pooled sample; Lane 6: negative reverse transcriptase control.</p>
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<p>Calculated fold change in the gene expression of UMFS1 gene after exposure to three different QAC-based disinfectants (BC: benzalkonium chloride; DDAC: didecyldimethylammonium chloride; Virukill: QAC-based disinfectant), at either 20 or 90 min of contact time, compared to untreated samples evaluated by quantitative real-time PCR.</p>
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30 pages, 2672 KiB  
Systematic Review
The Diagnostic Potential of Non-Invasive Tools for Oral Cancer and Precancer: A Systematic Review
by Tania Vanessa Pierfelice, Emira D’Amico, Chiara Cinquini, Giovanna Iezzi, Camillo D’Arcangelo, Simonetta D’Ercole and Morena Petrini
Diagnostics 2024, 14(18), 2033; https://doi.org/10.3390/diagnostics14182033 - 13 Sep 2024
Viewed by 340
Abstract
Objectives: This systematic review aimed to analyse the published evidence for the use of non-invasive methods for the early detection of oral squamous cell carcinoma (OSCC) and oral potentially malignant disorders (OPMDs). Methods: The literature was systematically searched through several databases: PubMed, Cochrane [...] Read more.
Objectives: This systematic review aimed to analyse the published evidence for the use of non-invasive methods for the early detection of oral squamous cell carcinoma (OSCC) and oral potentially malignant disorders (OPMDs). Methods: The literature was systematically searched through several databases: PubMed, Cochrane Library, and Web of Science. Additional exploration was performed through cross-checks on the bibliographies of selected reviews. The inclusion criteria involved studies assessing the application of non-invasive tests on humans in the screening, diagnosis, or surveillance of OSCC or OPMDs and reporting sensitivity (SE) and specificity (SP). The Newcastle–Ottawa scale (NOS) was applied to assess the quality of the studies included. Results: The search strategy resulted in 8012 preliminary records. After a duplicate check, 116 titles remained. After abstract analysis, 70 papers remained. After full text analysis, only 54 of the 70 papers fit the inclusion criteria (28 were original articles and 26 were reviews). Those 26 reviews were used to manually search for further original articles. From this last search, 33 original articles were found. Thus, a total of 61 original studies were included and investigated. Findings from this systematic review indicate useful information, such as a description of the mechanisms, ease of use, limitations, and SE and SP values, to drive the choice of the optimal minimally invasive method to be utilized as an adjunctive tool to examine the suspicious lesions. Conclusions: Each of the analysed tools can be improved or implemented, considering their high SE and low SP. Despite advancements, incisional biopsy continues to be the gold standard for the definitive diagnosis of oral cancer and precancerous lesions. Further research and development are essential to improving the sensitivity, specificity, and reliability of non-invasive tools for widespread clinical application. Full article
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<p>Flow-chart diagram for the selection of the 61 studies included in the present analysis, according to “The PRISMA 2020 statement: an updated guideline for reporting systematic reviews.” The document can be accessed at the following link: <a href="https://www.prisma-statement.org/prisma-2020-flow-diagram" target="_blank">https://www.prisma-statement.org/prisma-2020-flow-diagram</a> (accessed on 5 August 2024).</p>
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<p>Illustration of non-invasive tools for the diagnosis of oral cancer and precancer, grouped by their class. Created with BioRender.com and Microsoft(R) PowerPointR for Microsoft 365 MSO (Version 2406).</p>
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<p>Sensitivity with the relative standard deviation of non-invasive visual diagnostic tools. This graph has been built including values reported in each study. The mean and standard deviations were then calculated.</p>
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<p>Specificity with the relative standard deviation of non-invasive visual diagnostic tools. This graph has been built including the values reported in each study. The mean and standard deviations were then calculated.</p>
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13 pages, 4392 KiB  
Article
Aerosol-Deposited 8YSZ Coating for Thermal Shielding of 3YSZ/CNT Composites
by Maria Wiśniewska, Grzegorz Kubicki, Mateusz Marczewski, Volf Leshchynsky, Luca Celotti, Mirosław Szybowicz and Dariusz Garbiec
Coatings 2024, 14(9), 1186; https://doi.org/10.3390/coatings14091186 - 13 Sep 2024
Viewed by 362
Abstract
High-temperature conditions are harmful for carbon nanotube-based (CNT-based) composites, as CNTs are susceptible to oxidation. On the other hand, adding CNTs to ceramics with low electrical conductivity, such as 3YSZ, is beneficial because it allows the production of complex-shaped samples with spark plasma [...] Read more.
High-temperature conditions are harmful for carbon nanotube-based (CNT-based) composites, as CNTs are susceptible to oxidation. On the other hand, adding CNTs to ceramics with low electrical conductivity, such as 3YSZ, is beneficial because it allows the production of complex-shaped samples with spark plasma sintering (SPS). A shielding coating system may be applied to prevent CNT oxidation. In this work, the 8YSZ (yttria-stabilized zirconia) thermal shielding coating system was deposited by aerosol deposition (AD) to improve the composite’s resistance to CNT degradation without the use of bond-coat sublayers. Additionally, the influence of the annealing process on the mechanical properties and microstructure of the composite was evaluated by nanoindentation, scratch tests, scanning electron microscopy (SEM), X-ray diffraction (XRD), flame tests, and light microscopy (LM). Annealing at 1200 °C was the optimal temperature for heat treatment, improving the coating’s mechanical strength (the first critical load increased from 0.84 N to 3.69 N) and promoting diffusion bonding between the compacted powder particles and the substrate. The deposited coating of 8YSZ increased the composite’s thermal resistance by reducing the substrate’s heating rate and preventing the oxidation of CNTs. Full article
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<p>Particle (<b>a</b>) size distribution and (<b>b</b>) morphology of 8YSZ feedstock powders (magnification 1000×).</p>
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<p>Photographs of (<b>a</b>) thin and (<b>b</b>) thick 3YSZ/CNT 1” coupon with the 8YSZ coating annealed at 1200 °C.</p>
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<p>X-ray diffraction spectra comparison of (<b>a</b>) AD process results and (<b>b</b>) results of 8YSZ coating as-sprayed and heat-treated at 1000 °C (HT 1000 °C), 1100 °C (HT 1100 °C), and 1200 °C (HT 1200 °C).</p>
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<p>SEM micrographs of (<b>a</b>) heat-treated at 1000 °C, (<b>b</b>) heat-treated at 1100 °C, (<b>c</b>) heat-treated at 1200 °C coating surface, and (<b>d</b>) heat-treated at 1200 °C coating cross-sections ((<b>a</b>–<b>c</b>)—magnification—50k×, (<b>d</b>)—magnification 10k×).</p>
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<p>Nanoindentation result comparison of (<b>a</b>) indentation load of 30mN (coating cross-section) and (<b>b</b>) hardness and elastic modulus calculation results.</p>
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<p><span class="html-italic">H</span><sup>2</sup> = <span class="html-italic">f</span>(1/<span class="html-italic">h</span> − <span class="html-italic">h<sub>el</sub></span>) dependence for 30 mN indentation load for coatings as-sprayed and heat-treated at 1000 °C (HT_1000), 1100 °C (HT_1100), and 1200 °C (HT_1200).</p>
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<p>The scratch test results of the coatings (<b>a</b>) as-sprayed, (<b>b</b>) heat-treated at 1000 °C, (<b>c</b>) heat-treated at 1100 °C, and (<b>d</b>) heat-treated at 1200 °C. The bottom graph illustrates the optical micrographs of the scratch at the specified distances.</p>
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<p>Temperature at the back side of the samples (coated with 250 and 550 µm thick coating heat-treated at 1200 °C) during flame torch test.</p>
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<p>8YSZ-coated surface of samples heat-treated at 1200 °C after flame torch test (<b>a</b>) an overview of the entire sample surface, (<b>b</b>) a close-up view of region 1, which is marked in (<b>a</b>), and (<b>c</b>) a close-up view of region 2, which is marked in (<b>a</b>).</p>
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<p>8YSZ-coated 3YSZ-CNT shell-shaped composite heat-treated at 1200 °C: (<b>a</b>) face and (<b>b</b>) sides of the composite.</p>
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14 pages, 4179 KiB  
Article
Volatile Organic Compounds Produced by Bacillus sp. Strain R2 Inhibit Aspergillus flavus Growth In Vitro and in Unhulled Rice
by Qingyun Wang, Kaige Zhang, Lu Yu, Qinlu Lin and Wenhua Zhou
Foods 2024, 13(18), 2898; https://doi.org/10.3390/foods13182898 - 13 Sep 2024
Viewed by 273
Abstract
Volatile organic compounds (VOCs) produced by Bacillus species exhibit biocontrol activity against fungal pathogens of fruits and vegetables. However, research on the effect of VOCs on Aspergillus flavus in stored grains is limited. This study aimed to investigate the effects of VOCs extracted [...] Read more.
Volatile organic compounds (VOCs) produced by Bacillus species exhibit biocontrol activity against fungal pathogens of fruits and vegetables. However, research on the effect of VOCs on Aspergillus flavus in stored grains is limited. This study aimed to investigate the effects of VOCs extracted from the strain R2, which was isolated from unhulled rice and identified as Bacillus paramycoides on A. flavus in vitro and unhulled rice. R2 VOCs effectively inhibited conidial germination and the hyphal growth of A. flavus in vitro. Moreover, R2 VOCs reduced the fungal population, aflatoxin B1 (AFB1) levels, and free fatty acid (FFA) value by 90.8%, 67%, and 38.7%, respectively, in unhulled rice. Eighteen R2 VOCs were identified using headspace solid-phase micro-extraction gas chromatography–mass spectrometry, and the individual activity of the VOCs against A. flavus was tested in vitro. Benzaldehyde (Ben) and 3,7-dimethyl-1-octanol (Dmo) showed strong inhibitory activities against A. flavus on PDA plates, with inhibition rates of 100% and 91.2%, respectively, at a concentration of 20 μL/dish. Ben at the concentration of 0.09 mg/mL, Dmo at the concentration of 0.07 mg/mL, or a mixture of both at halved concentrations could reduce the fungal population, AFB1 levels, and FFA content in unhulled rice. Our findings suggest that R2 VOCs are good alternatives to traditional chemical fumigants for suppressing A. flavus in stored grains. However, further research is necessary to establish the optimal fumigation concentration of these two components in unhulled rice. The impact of their residues on grain quality should be explored through sensory evaluation and nutritional analysis, and their safety to the environment and human body should be evaluated through safety assessment. Full article
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<p>Diagram of the Erlenmeyer flask incubation method used to determine the inhibitory effect of R2 VOCs on <span class="html-italic">A. flavus</span> decay in unhulled rice samples.</p>
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<p>Effect of VOCs produced by isolated Bacillus strains on the radial growth of A. flavus. (<b>a</b>) <span class="html-italic">A. flavus</span> was treated by VOCs produced with different isolated strains and cultured on PDA plates at 30 °C for 5 days. (<b>b</b>) The colony diameter and radial growth inhibition rate of <span class="html-italic">A. flavus</span> treated by different VOCs produced by the isolated strains and cultured at 30 °C for 5 days. The mean values with different letters are significantly different (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Phylogenetic tree of strain R2 based on 16S rDNA gene sequences. Bootstrap values expressed as percentages of 1000 replicates are shown at branch points.</p>
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<p>Effect of R2 VOCs on <span class="html-italic">A. flavus</span> conidia germination. An <span class="html-italic">A. flavus</span> conidia suspension was smeared on a PDA plate and cultured at 32 °C. (<b>a</b>) Spore germination of control and R2 VOC-treated <span class="html-italic">A. flavus</span> when cultured for 8, 16, 48, and 72 h respectively. Scale bar: 50 μm. (<b>b</b>) Spore germination rate and spore germination inhibition rate.</p>
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<p>Effect of R2 VOCs on unhulled rice mildew. (<b>a</b>) Unhulled rice samples treated for 3, 5, and 7 days. (<b>b</b>) Inhibition effect of R2 VOCs on the fungal population in unhulled rice. (<b>c</b>) Effect of R2 VOCs on AFB<sub>1</sub> levels in unhulled rice. (<b>d</b>) Effect of R2 VOCs on the FFA in unhulled rice. Data represent the means ± standard deviation from three biological replicates measurements.</p>
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<p>Effect of Ben and Dmo at different volumes on <span class="html-italic">A. flavus</span> growth in PDA plates incubated at 30 °C for 7 days.</p>
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<p>Effect of Ben and Dmo and their mixture in a 1:1 volume ratio on A. flavus decay in unhulled rice. The concentration of Ben and Dmo was 0.09 mg/mL and 0.072 mg/mL, respectively. In the mixture, the concentration of Ben and Dmo was 0.045 and 0.036 mg/mL, respectively. (<b>a</b>) Unhulled rice samples treated for 3, 5, and 7 days. (<b>b</b>) Fungal population in control and treated unhulled rice. (<b>c</b>) AFB<sub>1</sub> values in control and treated unhulled rice. (<b>d</b>) FFA values in control and treated unhulled rice.</p>
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14 pages, 14978 KiB  
Article
Serum-Free Media Formulation Using Marine Microalgae Extracts and Growth Factor Cocktails for Madin-Darby Canine Kidney and Vero Cell Cultures
by Areumi Park, Yeon-Ji Lee, Eunyoung Jo, Gun-Hoo Park, Seong-Yeong Heo, Eun-Jeong Koh, Seung-Hong Lee, Seon-Heui Cha and Soo-Jin Heo
Int. J. Mol. Sci. 2024, 25(18), 9881; https://doi.org/10.3390/ijms25189881 - 12 Sep 2024
Viewed by 334
Abstract
The development of serum-free media (SFM) is critical to advance cell culture techniques used in viral vaccine production and address the ethical concerns and contamination risks associated with fetal bovine serum (FBS). This study evaluated the effects of marine microalgal extracts and growth [...] Read more.
The development of serum-free media (SFM) is critical to advance cell culture techniques used in viral vaccine production and address the ethical concerns and contamination risks associated with fetal bovine serum (FBS). This study evaluated the effects of marine microalgal extracts and growth factor cocktails on the activity of Madin-Darby canine kidney (MDCK) and Vero cells. Five marine microalgal species were used: Spirulina platensis (SP), Dunaliella salina (DS), Haematococcus pluvialis (HP), Nannochloropsis salina (NS), and Tetraselmis sp. (TS). DS and SP extracts significantly increased the proliferation rate of both MDCK and Vero cells. DS had a proliferation rate of 149.56% and 195.50% in MDCK and Vero cells, respectively, compared with that in serum-free medium (SFM). Notably, DS and SP extracts significantly increased superoxide dismutase (SOD) activity, which was 118.61% in MDCK cells and 130.08% in Vero cells for DS, and 108.72% in MDCK cells and 125.63% in Vero cells for SP, indicating a reduction in intracellular oxidative stress. Marine microalgal extracts, especially DS and SP, are feasible alternatives to FBS in cell culture as they promote cell proliferation, ensure safety, and supply essential nutrients while reducing oxidative stress. Full article
(This article belongs to the Special Issue Recent Research of Natural Products from Microalgae and Cyanobacteria)
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<p>Contamination detection in the microalgae extraction. (<b>A</b>) Mycoplasma, (<b>B</b>) bacteria, and (<b>C</b>) endotoxin. P: positive, N: negative, M: marker, SP: <span class="html-italic">Spirulina plantensis</span>, DS: <span class="html-italic">Dunaliella salina</span>, HP: <span class="html-italic">Haematococcus pluvialis</span>, NS: <span class="html-italic">Nannochloropsis salina</span>, and TS: <span class="html-italic">Tetraselmis</span> sp.</p>
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<p>Microalgae extract (50 and 100 µg/mL) cytotoxicity in Madin-Darby canine kidney (MDCK) and Vero cells. (<b>A</b>) MDCK and (<b>B</b>) Vero cells. Values are expressed as mean ± standard deviation (SD) from three replications. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01 indicate values compared to serum-free medium (SFM). SP: <span class="html-italic">Spirulina plantensis</span>, DS: <span class="html-italic">Dunaliella salina</span>, HP: <span class="html-italic">Haematococcus pluvialis</span>, NS: <span class="html-italic">Nannochloropsis salina</span>, and TS: <span class="html-italic">Tetraselmis</span> sp.</p>
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<p>Growth factor cocktail (1 and 10 ng/mL) cytotoxicity in Madin-Darby canine kidney (MDCK) and Vero cells. (<b>A</b>) MDCK and (<b>B</b>) Vero cells. Values are expressed as mean ± standard deviation (SD) from three replications. ** <span class="html-italic">p</span> &lt; 0.01 indicate values compared to serum-free medium (SFM).</p>
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<p>Madin-Darby canine kidney (MDCK) and Vero cell growth with microalgae extract (50 µg/mL) and growth factor cocktail. (<b>A</b>) MDCK and (<b>B</b>) Vero cells. Values are expressed as mean ± standard deviation (SD) from three replications. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001 indicate values compared to serum-free medium (SFM). SP: <span class="html-italic">Spirulina plantensis</span>, DS: <span class="html-italic">Dunaliella salina</span>, HP: <span class="html-italic">Haematococcus pluvialis</span>, NS: <span class="html-italic">Nannochloropsis salina</span>, and TS: <span class="html-italic">Tetraselmis</span> sp.</p>
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<p>Madin-Darby canine kidney (MDCK) and Vero cell growth with microalgae extract (100 µg/mL) and growth factor cocktail. (<b>A</b>) MDCK and (<b>B</b>) Vero cells. Values are expressed as mean ± standard deviation (SD) from three replications. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001 indicate values compared to serum-free medium (SFM). SP: <span class="html-italic">Spirulina plantensis</span>, DS: <span class="html-italic">Dunaliella salina</span>, HP: <span class="html-italic">Haematococcus pluvialis</span>, NS: <span class="html-italic">Nannochloropsis salina</span>, and TS: <span class="html-italic">Tetraselmis</span> sp.</p>
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<p>Madin-Darby canine kidney (MDCK) and Vero cell growth with microalgae extract (50 µg/mL) and growth factor cocktail. Scale bar = 50 µm. (<b>A</b>) MDCK and (<b>B</b>) Vero cells. Values are expressed as mean ± standard deviation (SD) from three replications. * <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01 indicate values compared to serum-free medium (SFM). SP: <span class="html-italic">Spirulina plantensis</span>, DS: <span class="html-italic">Dunaliella salina</span>, HP: <span class="html-italic">Haematococcus pluvialis</span>, NS: <span class="html-italic">Nannochloropsis salina</span>, TS: <span class="html-italic">Tetraselmis</span> sp.</p>
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<p>Madin-Darby canine kidney (MDCK) and Vero apoptosis assay cultured in microalgae extract (50 µg/mL) and growth factor cocktail (10 ng/mL). (<b>A</b>) MDCK and (<b>B</b>) Vero cells. Values are expressed as mean ± standard deviation (SD) from three replications. *** <span class="html-italic">p</span> &lt; 0.001 indicate values compared to serum-free medium (SFM). SP: <span class="html-italic">Spirulina plantensis</span>, DS: <span class="html-italic">Dunaliella salina</span>, HP: <span class="html-italic">Haematococcus pluvialis</span>, NS: <span class="html-italic">Nannochloropsis salina</span>, TS: <span class="html-italic">Tetraselmis</span> sp.</p>
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<p>Superoxide dismutase (SOD) activity of microalgae extract and growth factor cocktail. (<b>A</b>) Madin-Darby canine kidney (MDCK) and (<b>B</b>) Vero cells. Values are expressed as mean ± standard deviation (SD) from three replications. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001 indicate values compared to serum-free medium (SFM). SP: <span class="html-italic">Spirulina plantensis</span>, DS: <span class="html-italic">Dunaliella salina</span>, HP: <span class="html-italic">Haematococcus pluvialis</span>, NS: <span class="html-italic">Nannochloropsis salina</span>, TS: <span class="html-italic">Tetraselmis</span> sp.</p>
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17 pages, 6378 KiB  
Article
Bioprospecting of Mangrove Filamentous Fungi for the Biodegradation of Polyethylene Microplastics
by Arthur Aguiar, Letícia Gama, Milene Fornari, Almir Neto, Rodrigo de Souza, Rafael Perna, Laura Castro, Stella Kovacs, Marta Filipa Simões, Nelson Ferreira, Yoannis Domínguez, Leandro de Castro and Cristiane Ottoni
J. Mar. Sci. Eng. 2024, 12(9), 1629; https://doi.org/10.3390/jmse12091629 - 12 Sep 2024
Viewed by 378
Abstract
The accumulation of microplastics (MPs) in the environment has been a bottleneck for scientific society. Several approaches have been described as possibilities for reducing MPs in aquatic and terrestrial ecosystems; however, most of them are not environmentally friendly. Filamentous fungi (Ff) cells are [...] Read more.
The accumulation of microplastics (MPs) in the environment has been a bottleneck for scientific society. Several approaches have been described as possibilities for reducing MPs in aquatic and terrestrial ecosystems; however, most of them are not environmentally friendly. Filamentous fungi (Ff) cells are currently considered a promising solution as a treatment for MPs. Therefore, the present study reports the potential ability of Ff isolated from mangrove sediments to biodegrade low-density polyethylene MPs (LDPEMPs). Six Ff strains were grown in batch cultures for 28 days, and one of them, Aspergillus sp. (AQ3A), showed the most prominent profile to biodegrade polymeric compounds. After morphological and molecular analysis, all strains were identified as belonging to the genera Aspergillus (MQ1C, AQ2A and AQ3A), Penicillium (MQ1A), and Trichoderma (MQ1B and MQ2A). The strain Aspergillus sp. (AQ3A) showed the most promising results with a LDPEMPs reduction rate of 47% and biomass formation of 0.0890 g·mL−1. Complementary studies with Aspergillus sp. (AQ3A) using Fourier-transform infrared spectroscopy (FTIR) highlighted changes in the molecular structure of LDPEMPs. These results indicate that Ff can contribute to the biodegradation of LDPEMPs. However, other parameters, mainly associated with the enzymes that are involved in this biodegradation process, need to be explored. Full article
(This article belongs to the Special Issue Effects of Ocean Plastic Pollution on Aquatic Life)
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<p>Location of the sampling site at the Ecological Station of Juréia-Itatins, Peruíbe, Brazil.</p>
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<p>Morphology of low density polyethylene microplastics: (<b>A</b>) microfiber, (<b>B</b>) microfragments, and (<b>C</b>) microsphere.</p>
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<p>Bayesian tree of internal transcribed spacers (ITS) sequences, obtained from fungal isolates (AQ2A, AQ3A, MQ1A, MQ1B, MQ1C, and MQ2A) and related species previously recorded in Brazil. Numbers above the branches indicate posterior probabilities, and the bar indicates the number of nucleotide substitutions per site.</p>
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<p>Fourier-transform infrared spectroscopy (FTIR) analysis of low-density polyethylene microplastics (LDPE<sub>MPs</sub>), before and after biodegradation test, using AQ3A strain. (<b>A</b>) Treatment after seven days, (<b>B</b>) treatment after 14 days, (<b>C</b>) treatment after 21 days, (<b>D</b>) treatment after 28 days, (<b>E</b>) control containing only LDPE<sub>MPs</sub> after 7 days, and (<b>F</b>) control containing only LDPE<sub>MPs</sub> after 28 days.</p>
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19 pages, 6589 KiB  
Article
Evaluation of Bacillus velezensis F9 for Cucumber Growth Promotion and Suppression of Fusarium wilt Disease
by Yongquan Ta, Shaowei Fu, Hui Liu, Caiyun Zhang, Mengru He, Hang Yu, Yihua Ren, Yunfei Han, Wenqiong Hu, Zhiqiang Yan and Yonghong Wang
Microorganisms 2024, 12(9), 1882; https://doi.org/10.3390/microorganisms12091882 - 12 Sep 2024
Viewed by 259
Abstract
Cucumber wilt, caused by Fusarium oxysporum f. sp. cucumerinum (FOC), is a soilborne disease that poses a significant threat to cucumber production, resulting in substantial yield losses. This study aimed to evaluate the biocontrol and growth-promoting effects of Bacillus velezensis, a [...] Read more.
Cucumber wilt, caused by Fusarium oxysporum f. sp. cucumerinum (FOC), is a soilborne disease that poses a significant threat to cucumber production, resulting in substantial yield losses. This study aimed to evaluate the biocontrol and growth-promoting effects of Bacillus velezensis, a highly active bacterial strain. In vitro assays revealed that B. velezensis F9 exhibited broad-spectrum antifungal activity against eight plant pathogenic fungi, with inhibition ratio ranging from 62.66% to 88.18%. Additionally, the strain displayed the ability to produce IAA (5.97 ± 1.75 µg/mL), fix nitrogen, produce siderophores, and form biofilms. In vitro growth promotion assays demonstrated that different concentrations of B. velezensis F9 significantly promoted cucumber seedling growth. Furthermore, two pot experiments revealed that the strain exhibited biocontrol efficacy against cucumber wilt, with disease control rates ranging from 42.86% to 67.78%. Notably, the strain significantly increased the plant height, fresh weight, and dry weight, with increases ranging from 20.67% to 60.04%, 40.27% to 75.51%, and 22.07% to 52.54%, respectively. Two field trials confirmed the efficacy of B. velezensis F9 in controlling cucumber wilt, with disease control rates of 44.95% and 33.99%, respectively. The strain effectively alleviated the dwarfing and wilting symptoms caused by the pathogen. Compared with the FOC treatment, the F9 + FOC treatment significantly increased the plant height, fresh weight, and dry weight, with increases of 43.85% and 56.28%, 49.49% and 23.70%, and 36.25% and 73.63%, respectively. Enzyme activity assays indicated that inoculation significantly increased SOD activity in cucumber leaves and neutral phosphatase, sucrase, and urease activity in rhizosphere soil. Correlation analysis revealed a negative correlation between the disease index and plant height, fresh weight, dry weight, and peroxidase activity, with correlation coefficients of −0.53, −0.60, −0.38, and −0.45, respectively. These findings suggest that plant height, fresh weight, and dry weight are significantly negatively correlated with the cucumber disease index, highlighting their importance as indicators for evaluating the biocontrol efficacy of B. velezensis F9. In conclusion, B. velezensis F9 is a highly effective plant growth-promoting rhizobacterium with excellent biocontrol potential, showcasing promising applications in agricultural production. Full article
(This article belongs to the Section Plant Microbe Interactions)
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Figure 1

Figure 1
<p>Flowchart for evaluating the effectiveness of <span class="html-italic">Bacillus velezensis</span> F9 in controlling cucumber wilt disease. (<b>a</b>) Antifungal activity and plant growth promotion (PGP) trait evaluation; (<b>b</b>) Plant growth promotion effect of strain F9 on cucumber seedlings in vitro; (<b>c</b>) Evaluating the efficacy and investigating the mechanism of strain F9 in controlling cucumber wilt in pot and field experiments.</p>
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<p>Evaluation of the antimicrobial and growth-promoting characteristics of strain F9. (<b>a</b>–<b>h</b>) represent pathogen control; (<b>i</b>–<b>p</b>) represent the inhibitory effect of strain F9 against <span class="html-italic">Rhizoctonia solani</span> (<b>i</b>); <span class="html-italic">Sclerotinia sclerotiorum</span> (<b>j</b>); <span class="html-italic">Botrytis cinerea</span> (<b>k</b>); <span class="html-italic">Gaeu-mannomyces graminsis (sacc.) Arx &amp; Olivier Var tritici J. Walker</span> (<b>l</b>); <span class="html-italic">Alteraria alternate</span> (<b>m</b>); <span class="html-italic">Botryospuaeria berengeriana</span> (<b>n</b>); <span class="html-italic">Fusarium oxysporum f.</span> sp. <span class="html-italic">niveum</span> (<b>o</b>); <span class="html-italic">Fusarium oxysporum f.</span> sp. <span class="html-italic">cucumebrium Owen</span> (<b>p</b>). (<b>q</b>) IAA production assay; (<b>r</b>) nitrogen fixation assay; (<b>s</b>) potassium solubilization activity assay; (<b>t</b>) siderophore activity assay; (<b>u</b>–<b>x</b>) biofilm formation capability assay, where u is the blank control in LB medium; (<b>v</b>) biofilm in LBG medium; (<b>w</b>) biofilm in LBGM; and (<b>x</b>) biofilm in LB medium.</p>
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<p>Phylogenetic tree of strain F9 on the basis of 16S rDNA by neighbor-joining method. Bootstrap values are based on 1000 repeats.</p>
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<p>Growth-promoting effect of strain F9 on cucumber seedlings in vitro. (<b>a</b>) Growth promotion effect in vitro; (<b>b</b>) germination ratio; (<b>c</b>) seedling length; (<b>d</b>) root length; (<b>e</b>) fresh weight. Different letters represent significant differences at the 0.05 level according to ANOVA. The error bar represents the SE.</p>
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<p>Growth-promoting effect of strain F9 on cucumber seedlings in vitro. (<b>a</b>) Growth promotion effect in vitro; (<b>b</b>) germination ratio; (<b>c</b>) seedling length; (<b>d</b>) root length; (<b>e</b>) fresh weight. Different letters represent significant differences at the 0.05 level according to ANOVA. The error bar represents the SE.</p>
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<p>Disease control and growth promotion effects of strain F9 on cucumber strain F9 in June 2020. (<b>a</b>) inhibition ratio, (<b>b</b>) chlorophyll content, (<b>c</b>) plant height, (<b>d</b>) stem diameter, (<b>e</b>) fresh weight, and (<b>f</b>) dry weight. Each treatment was replicated 4 times, and the data are presented as the means ± SEs. Different lowercase letters indicate significant differences between treatments at the 0.05 level. During data analysis, all replicates were pooled for disease index, fresh weight, and dry weight calculations. Therefore, no replicate values were available for statistical significance testing.</p>
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<p>Disease control and growth promotion effects of strain F9 on cucumber plants in June 2021. (<b>a</b>) Pot pictures, (<b>b</b>) inhibition ratio, (<b>c</b>) plant height, (<b>d</b>) stem diameter, (<b>e</b>) fresh weight and (<b>f</b>) dry weight. Each treatment was replicated 4 times, and the data are presented as the means ± SEs. Different lowercase letters indicate significant differences between treatments at the 0.05 level. The inhibition ratio represents individual values obtained by combining and analyzing 4 replicates of cucumber plants; therefore, mean and standard error calculations cannot be performed.</p>
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<p>Inhibitory effect of strain F9 on Fusarium wilt in cucumber in the field. (<b>a</b>,<b>b</b>) are pictures of different views in June 2021; (<b>c</b>,<b>d</b>) are pictures of different times in July 2021.</p>
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<p>Correlation heatmap of cucumber plant phenotypic traits in the plot experiment. The top right corner represents the heatmap with significant markers, whereas the bottom left corner displays the correlation coefficient (r) values calculated by person method. “*” represents significance at the 0.05 level, and “**” represents significance at the 0.01 level.</p>
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