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23 pages, 5452 KiB  
Article
Bio-Optical Properties and Ocean Colour Satellite Retrieval along the Coastal Waters of the Western Iberian Coast (WIC)
by Luciane Favareto, Natalia Rudorff, Vanda Brotas, Andreia Tracana, Carolina Sá, Carla Palma and Ana C. Brito
Remote Sens. 2024, 16(18), 3440; https://doi.org/10.3390/rs16183440 (registering DOI) - 16 Sep 2024
Viewed by 216
Abstract
Essential Climate Variables (ECVs) like ocean colour provide crucial information on the Optically Active Constituents (OACs) of seawater, such as phytoplankton, non-algal particles, and coloured dissolved organic matter (CDOM). The challenge in estimating these constituents through remote sensing is in accurately distinguishing and [...] Read more.
Essential Climate Variables (ECVs) like ocean colour provide crucial information on the Optically Active Constituents (OACs) of seawater, such as phytoplankton, non-algal particles, and coloured dissolved organic matter (CDOM). The challenge in estimating these constituents through remote sensing is in accurately distinguishing and quantifying optical and biogeochemical properties, e.g., absorption coefficients and the concentration of chlorophyll a (Chla), especially in complex waters. This study evaluated the temporal and spatial variability of bio-optical properties in the coastal waters of the Western Iberian Coast (WIC), contributing to the assessment of satellite retrievals. In situ data from three oceanographic cruises conducted in 2019–2020 across different seasons were analyzed. Field-measured biogenic light absorption coefficients were compared to satellite estimates from Ocean-Colour Climate Change Initiative (OC-CCI) reflectance data using semi-analytical approaches (QAA, GSM, GIOP). Key findings indicate substantial variability in bio-optical properties across different seasons and regions. New bio-optical coefficients improved satellite data retrieval, reducing uncertainties and providing more reliable phytoplankton absorption estimates. These results highlight the need for region-specific algorithms to accurately capture the unique optical characteristics of coastal waters. Improved comprehension of bio-optical variability and retrieval techniques offers valuable insights for future research and coastal environment monitoring using satellite ocean colour data. Full article
Show Figures

Figure 1

Figure 1
<p>Location of in situ sampling stations (black dots, N = 125) and their matches with OC-CCI data (red circle, N = 53) in the five regions (A, B, C, D, and E). The AQ2 campaign was carried out in April/May 2019 (spring), AQ3 in October 2019 (autumn), and AQ4 in February/March 2020 (early spring). The main capes (Carvoeiro, Espichel, Sines, and São Vicente-Sagres; black lines) and the main points of freshwater entrance (from north to south: Minho, Lima, Ave, Douro, Ria de Aveiro, Mondego, Tagus, Sado, Mira, Odiáxere, Arade, Quarteira, Ria Formosa, Gilão, and Guadiana; blue dots) are identified on the map. Isobaths of 100, 200, and 1000 m (m) were obtained from GEBCO [<a href="#B25-remotesensing-16-03440" class="html-bibr">25</a>].</p>
Full article ">Figure 2
<p>Schematic representation of the satellite data processing routine implemented to derive Chl<span class="html-italic">a</span> concentrations and bio-optical properties (<span class="html-italic">a</span><sub>ph</sub> and <span class="html-italic">a</span><sub>dg</sub>).</p>
Full article ">Figure 3
<p>Distribution map of the total in situ absorption coefficients (<span class="html-italic">a</span><sub>t-w</sub> m<sup>−1</sup>, without the sum of water absorption, N = 125) at wavelength (λ) 443 nm and their respective spectra (λ = 350 to 700 nm) by area (<b>A</b> to <b>E</b>) and oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">Figure 4
<p>Triangular diagram (<b>I</b> to <b>V</b>) representing the contribution of the in situ absorption coefficients of phytoplankton (<span class="html-italic">a</span><sub>ph</sub> at 443 nm, m<sup>−1</sup>), non-algal particles (NAPs, at 443 nm, m<sup>−1</sup>), and coloured dissolved organic matter (CDOM, <span class="html-italic">a</span><sub>g</sub> at 443 nm, m<sup>−1</sup>) by sampled area (<b>A</b> to <b>E</b>) and oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring). The bar graph (<b>VI</b>) shows the percentage (%) number of samples by area and campaign for each type of water [<a href="#B57-remotesensing-16-03440" class="html-bibr">57</a>], named according to the contribution of their components: <span class="html-italic">a</span><sub>ph</sub> + <span class="html-italic">a</span><sub>g</sub>, <span class="html-italic">a</span><sub>ph</sub>, <span class="html-italic">a</span><sub>g</sub>, <span class="html-italic">a</span><sub>ph</sub> + <span class="html-italic">a</span><sub>d</sub>, and <span class="html-italic">a</span><sub>ph</sub> + <span class="html-italic">a</span><sub>g</sub> + <span class="html-italic">a</span><sub>d</sub>.</p>
Full article ">Figure 5
<p>Spatial variation of phytoplankton absorption coefficient (<span class="html-italic">a</span><sub>ph</sub>, m<sup>−1</sup>), non-algal particles or detritus (<span class="html-italic">a</span><sub>d</sub>, m<sup>−1</sup>), and CDOM (<span class="html-italic">a</span><sub>g</sub>, m<sup>−1</sup>), at wavelength (λ) 443 nm and their respective spectra (λ = 350 to 700 nm) by area (<b>A</b> to <b>E</b>) and oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">Figure 6
<p>(<b>I</b>) Relationships between the in situ Chl<span class="html-italic">a</span> (mg m<sup>−3</sup>) and phytoplankton absorption coefficient (<span class="html-italic">a</span><sub>ph</sub> at 443 nm, m<sup>−1</sup>) obtained by fitting a power law function (“Fit”, with coefficients “a” and “b”, r-squared: R<sup>2</sup>, and the number of samples: N). The relationship between Chl<span class="html-italic">a</span> and <span class="html-italic">a</span><sub>ph</sub> was compared to the results obtained by Bricaud et al. [<a href="#B42-remotesensing-16-03440" class="html-bibr">42</a>,<a href="#B50-remotesensing-16-03440" class="html-bibr">50</a>,<a href="#B58-remotesensing-16-03440" class="html-bibr">58</a>] (B98, B04, and B10, respectively) and Loisel et al. [<a href="#B56-remotesensing-16-03440" class="html-bibr">56</a>] (L10). (<b>II</b>) <span class="html-italic">a</span><sub>ph</sub> versus Chl<span class="html-italic">a</span>, which was compared to the results obtained by Sá et al. [<a href="#B52-remotesensing-16-03440" class="html-bibr">52</a>] (S15) and the Algal 2 (A2) algorithm [<a href="#B60-remotesensing-16-03440" class="html-bibr">60</a>]. The symbols correspond to different sampled areas (A to E), with different colours representing each oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">Figure 7
<p>Relationships between (<b>I</b>) in situ absorption coefficient of non-algal particles (<span class="html-italic">a</span><sub>d</sub>, m<sup>−1</sup>) and in situ Chl<span class="html-italic">a</span> (mg m<sup>−3</sup>); (<b>II</b>) in situ absorption coefficient of non-algal particles (<span class="html-italic">a</span><sub>d</sub>, m<sup>−1</sup>) and turbidity (Turb, FTU); (<b>III</b>) in situ absorption coefficient of coloured dissolved organic matter or gelbstoff (<span class="html-italic">a</span><sub>g</sub>, m<sup>−1</sup>) and in situ Chl<span class="html-italic">a</span> (mg m<sup>−3</sup>); (<b>IV</b>) spectral slope of detritus (S<sub>d</sub>, nm<sup>−1</sup>) and the absorption coefficient of non-algal particles (<span class="html-italic">a</span><sub>d</sub>, m<sup>−1</sup>); (<b>V</b>) spectral slope of CDOM (S<sub>g</sub>, nm<sup>−1</sup>) and the absorption coefficient of CDOM (<span class="html-italic">a</span><sub>g</sub>, m<sup>−1</sup>); and (<b>VI</b>) spectral slope of detritus + CDOM (Sd<sub>g</sub>, nm<sup>−1</sup>) and the absorption coefficient of detritus + CDOM (<span class="html-italic">a</span><sub>dg</sub>, m<sup>−1</sup>). The fit curve was obtained by a power law function (“Fit”, with coefficients “a” and “b”, r-squared: R<sup>2</sup>, and number of samples: N). Comparisons with the curves obtained by B10 [<a href="#B42-remotesensing-16-03440" class="html-bibr">42</a>] are also presented. The symbols correspond to different sampled areas (A to E), with different colours representing each oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">Figure 8
<p>Comparison between in situ Chl<span class="html-italic">a</span> (mg m<sup>−3</sup>) and its corresponding retrievals using the (<b>I</b>) OC5CCI algorithm (OC-CCI) [<a href="#B9-remotesensing-16-03440" class="html-bibr">9</a>] and (<b>II</b>) Garver–Siegel–Maritorena—the GSM algorithm [<a href="#B57-remotesensing-16-03440" class="html-bibr">57</a>]. The symbols correspond to different sampled areas (A to E), with different colours representing each oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">Figure 9
<p>Comparison between in situ absorption coefficients (<span class="html-italic">a</span><sub>t</sub>, <span class="html-italic">a</span><sub>ph</sub>, and <span class="html-italic">a</span><sub>dg</sub> at 443 nm, m<sup>−1</sup>) and their corresponding retrievals, obtained by default algorithms—the QAA from OC-CCI v5 ((<b>I</b>)–(<b>III</b>)), GSM ((<b>IV</b>)–(<b>VI</b>)), and GIOP—using Chl<span class="html-italic">a</span> OC5CCI retrievals as their input (GIOP-OC5CCI; <b>VII</b>–<b>IX</b>). The symbols correspond to different sampled areas (A to E), with different colours representing each oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">Figure 10
<p>Comparison between in situ absorption coefficients (<span class="html-italic">a</span><sub>t</sub>, <span class="html-italic">a</span><sub>ph</sub>, and <span class="html-italic">a</span><sub>dg</sub> at 443 nm, m<sup>−1</sup>) (<b>I</b>–<b>III</b>) and the GIOP, with Chl<span class="html-italic">a</span> OC5CCI retrievals as the input and using the RG coefficients (regional, <a href="#app1-remotesensing-16-03440" class="html-app">Figure S5</a>), namely the GIOP-OC5CCI-RG. The symbols correspond to different sampled areas (A to E), with different colours representing each oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">Figure 11
<p>Comparison between in situ <span class="html-italic">a</span><sub>ph</sub> at 443 nm (m<sup>−1</sup>) and the retrievals from the OC5CCI using the RG coefficients at 443 nm (Chl<span class="html-italic">a</span> vs. <span class="html-italic">a</span><sub>ph</sub>). The dotted line is the 1:1 line, symbols correspond to different sampled areas (A to E), with different colours representing each oceanographic campaign (AQ2—spring, AQ3—autumn, and AQ4—early spring).</p>
Full article ">
39 pages, 7466 KiB  
Article
Evaluation of Adsorption Ability of Lewatit® VP OC 1065 and Diaion™ CR20 Ion Exchangers for Heavy Metals with Particular Consideration of Palladium(II) and Copper(II)
by Anna Wołowicz and Zbigniew Hubicki
Molecules 2024, 29(18), 4386; https://doi.org/10.3390/molecules29184386 - 15 Sep 2024
Viewed by 246
Abstract
The adsorption capacities of ion exchangers with the primary amine (Lewatit® VP OC 1065) and polyamine (Diaion™ CR20) functional groups relative to Pd(II) and Cu(II) ions were tested in a batch system, taking into account the influence of the acid concentration (HCl: [...] Read more.
The adsorption capacities of ion exchangers with the primary amine (Lewatit® VP OC 1065) and polyamine (Diaion™ CR20) functional groups relative to Pd(II) and Cu(II) ions were tested in a batch system, taking into account the influence of the acid concentration (HCl: 0.1–6 mol/L; HCl-HNO3: 0.9–0.1 mol/L HCl—0.1–0.9 mol/L HNO3), phase contact time (1–240 min), initial concentration (10–1000 mg/L), agitation speed (120–180 rpm), bead size (0.385–1.2 mm), and temperature (293–333 K), as well as in a column system where the variable operating parameters were HCl and HNO3 concentrations. There were used the pseudo-first order, pseudo-second order, and intraparticle diffusion models to describe the kinetic studies and the Langmuir and Freundlich isotherm models to describe the equilibrium data to obtain better knowledge about the adsorption mechanism. The physicochemical properties of the ion exchangers were characterized by the nitrogen adsorption/desorption analyses, CHNS analysis, Fourier transform infrared spectroscopy, the sieve analysis, and points of zero charge measurements. As it was found, Lewatit® VP OC 1065 exhibited a better ability to remove Pd(II) than Diaion™ CR20, and the adsorption ability series for heavy metals was as follows: Pd(II) >> Zn(II) ≈ Ni(II) >> Cu(II). The optimal experimental conditions for Pd(II) sorption were 0.1 mol/L HCl, agitation speed 180 rpm, temperature 293 K, and bead size fraction 0.43 mm ≤ f3 < 0.6 mm for Diaion™ CR20 and 0.315–1.25 mm for Lewatit® VP OC 1065. The maximum adsorption capacities were 289.68 mg/g for Lewatit® VP OC 1065 and 208.20 mg/g for Diaion™ CR20. The greatest adsorption ability of Lewatit® VP OC 1065 for Pd(II) was also demonstrated in the column studies. The working ion exchange in the 0.1 mol/L HCl system was 0.1050 g/mL, much higher compared to Diaion™ CR20 (0.0545 g/mL). The best desorption yields of %D1 = 23.77% for Diaion™ CR20 and 33.57% for Lewatit® VP OC 1065 were obtained using the 2 mol/L NH3·H2O solution. Full article
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Figure 1

Figure 1
<p>Palladium and copper application, impact on the body, dietary sources and prices, supply, demand, and uses.</p>
Full article ">Figure 1 Cont.
<p>Palladium and copper application, impact on the body, dietary sources and prices, supply, demand, and uses.</p>
Full article ">Figure 2
<p>(<b>a</b>) Percentage content of elements and (<b>b</b>) comparison of <span class="html-italic">pH<sub>PZC</sub></span> values in/for Lewatit<sup>®</sup> VP OC 1065 and Diaion™ CR20 ion exchange resins.</p>
Full article ">Figure 3
<p>Low-temperature adsorption/desorption nitrogen isotherm of (<b>a</b>) Diaion™ CR20 and (<b>b</b>) Lewatit<sup>®</sup> VP OC 1065 ion exchangers.</p>
Full article ">Figure 4
<p>ATR/FT-IR spectra of (<b>a</b>) Diaion™ CR20 and (<b>b</b>) Lewatit<sup>®</sup> VP OC 1065 before and after loading with Pd(II) and Cu(II) ions.</p>
Full article ">Figure 5
<p>Comparison of M(II) sorption efficiency expressed in <span class="html-italic">q<sub>t</sub></span> values for Diaion™ CR20 (<b>a</b>,<b>c</b>,<b>e</b>,<b>g</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>b</b>,<b>d</b>,<b>f</b>,<b>h</b>).</p>
Full article ">Figure 5 Cont.
<p>Comparison of M(II) sorption efficiency expressed in <span class="html-italic">q<sub>t</sub></span> values for Diaion™ CR20 (<b>a</b>,<b>c</b>,<b>e</b>,<b>g</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>b</b>,<b>d</b>,<b>f</b>,<b>h</b>).</p>
Full article ">Figure 6
<p>Effects of contact time and agitation speed on the Pd(II) adsorption on Diaion™ CR20 (<b>a</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>b</b>).</p>
Full article ">Figure 7
<p>Effects of contact time and the initial Pd(II) concentration on Pd(II) adsorption on Diaion™ CR20 (<b>a</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>b</b>).</p>
Full article ">Figure 8
<p>Effects of contact time and bead size of ion exchangers (f5 &lt; 0.385 mm; 0.385 mm ≤ f4 &lt; 0.43 mm; 0.43 mm ≤ f3 &lt; 0.6 mm; 0.6 mm ≤ f2 &lt; 0.75 mm; 0.75 mm ≤ f1 &lt; 1.2 mm) on Pd(II) adsorption on Diaion™ CR20 (<b>a</b>,<b>c</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>b</b>,<b>d</b>).</p>
Full article ">Figure 9
<p>Effects of contact time and temperature on the Pd(II) adsorption on Diaion™ CR20 (<b>a</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>b</b>).</p>
Full article ">Figure 10
<p>Effects of contact time and initial concentration (<b>a</b>), agitation speed (<b>b</b>), bead size of ion exchanger (f5 &lt; 0.385 mm; 0.385 mm ≤ f4 &lt; 0.43 mm; 0.43 mm ≤ f3 &lt; 0.6 mm; 0.6 mm ≤ f2 &lt; 0.75 mm; 0.75 mm ≤ f1 &lt; 1.2 mm), (<b>c</b>) and temperature (<b>d</b>) on Cu(II) adsorption on Diaion™ CR20 from 6 mol/L HCl—10 (<b>a</b>) or 50 mg Cu(II)/L (<b>a</b>–<b>d</b>).</p>
Full article ">Figure 11
<p>PFO (<b>a</b>,<b>b</b>), PSO (<b>c</b>,<b>d</b>), and IPD (<b>e</b>,<b>f</b>) plots and fitting of the experimental data of Pd(II) ion adsorption on Diaion™ CR20 (<b>g</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>h</b>).</p>
Full article ">Figure 11 Cont.
<p>PFO (<b>a</b>,<b>b</b>), PSO (<b>c</b>,<b>d</b>), and IPD (<b>e</b>,<b>f</b>) plots and fitting of the experimental data of Pd(II) ion adsorption on Diaion™ CR20 (<b>g</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>h</b>).</p>
Full article ">Figure 12
<p>Experimental points and fitting of the Langmuir and Freundlich isotherms for Pd(II) (<b>a</b>,<b>c</b>) and Cu(II) (<b>b</b>,<b>d</b>) ion adsorption on the Diaion™ CR20 (<b>a</b>,<b>b</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>c</b>,<b>d</b>).</p>
Full article ">Figure 13
<p>Comparison of the breakthrough curves of Pd(II) ion adsorption on Lewatit<sup>®</sup> VP OC 1065 (<b>a</b>,<b>c</b>) and Diaion™ CR20 (<b>b</b>,<b>d</b>) from the chloride 0.1–6 mol/L HCl—100 mg Pd(II)/L (<b>a</b>,<b>b</b>) and the chloride-nitrate(V) solutions 0.1–0.9 mol/L HCl—0.9–0.1 mol/L HNO<sub>3</sub>—100 mg Pd(II)/L (<b>c</b>,<b>d</b>).</p>
Full article ">Figure 13 Cont.
<p>Comparison of the breakthrough curves of Pd(II) ion adsorption on Lewatit<sup>®</sup> VP OC 1065 (<b>a</b>,<b>c</b>) and Diaion™ CR20 (<b>b</b>,<b>d</b>) from the chloride 0.1–6 mol/L HCl—100 mg Pd(II)/L (<b>a</b>,<b>b</b>) and the chloride-nitrate(V) solutions 0.1–0.9 mol/L HCl—0.9–0.1 mol/L HNO<sub>3</sub>—100 mg Pd(II)/L (<b>c</b>,<b>d</b>).</p>
Full article ">Figure 14
<p>Comparison of the adsorption (%<span class="html-italic">S</span>) and desorption (%<span class="html-italic">D</span>) efficiency of Pd(II) ions on/from (<b>a</b>) Diaion™ CR20, (<b>b</b>) Lewatit<sup>®</sup> VP OC 1065 ion exchangers in three adsorption–desorption cycles using ammonium hydroxide solutions.</p>
Full article ">Figure 15
<p>Effects of simultaneous presence of Pd(II) and Cu(II) ions in the solutions on their sorption yield on the Diaion™ CR20 and Lewatit<sup>®</sup> VP OC 1065 ion exchangers from the S (single) and B (bi-component) solutions.</p>
Full article ">Figure 16
<p>Diaion™ CR20 (<b>a</b>,<b>c</b>) and Lewatit<sup>®</sup> VP OC 1065 (<b>b</b>,<b>d</b>) ion exchange resins beads before the adsorption (<b>a</b>,<b>b</b>) (magnification 5×) and after the Cu(II) and Pd(II) adsorption (<b>c</b>,<b>d</b>) (magnification 2.5×).</p>
Full article ">
25 pages, 2574 KiB  
Review
Understanding the Impact of Oxidative Stress on Ovarian Cancer: Advances in Diagnosis and Treatment
by Yeva Meshkovska, Artem Abramov, Shaheen Mahira and Sowjanya Thatikonda
Future Pharmacol. 2024, 4(3), 651-675; https://doi.org/10.3390/futurepharmacol4030035 - 12 Sep 2024
Viewed by 180
Abstract
Ovarian cancer (OC) ranks as the fifth most common cancer among women in the United States and globally, posing a significant health threat. Reactive oxygen species (ROS) have emerged as critical factors in the pathophysiology of this malignancy. ROS, characterized by their instability [...] Read more.
Ovarian cancer (OC) ranks as the fifth most common cancer among women in the United States and globally, posing a significant health threat. Reactive oxygen species (ROS) have emerged as critical factors in the pathophysiology of this malignancy. ROS, characterized by their instability due to an unpaired electron, are involved in essential cellular functions and play a crucial role in the immune response under normal physiological conditions. However, an imbalance in ROS homeostasis, leading to excessive ROS production, results in oxidative stress (OS), which can cause indiscriminate damage to cellular structures and contribute to the pathogenesis of specific diseases, including OC. OC is primarily classified based on the originating cell type into epithelial, stromal, and germinal tumors, with epithelial tumors being the most prevalent. Despite advancements in medical technology, early detection of OC remains challenging, often leading to delayed treatment initiation. Current therapeutic approaches include surgical excision of tumor tissue, radiotherapy, and chemotherapy. While these treatments are effective in early-stage OC, high mortality rates and frequent relapse underscore the urgent need for novel diagnostic and therapeutic strategies. This review aims to elucidate the role of ROS in OC, emphasizing the potential for developing innovative diagnostic tools and treatments that target ROS-mediated pathways. Given the critical impact of early detection and effective treatment, advancing our understanding of ROS in the context of OC could significantly enhance patient outcomes. Full article
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Graphical abstract

Graphical abstract
Full article ">Figure 1
<p>The major types of OCs. The figure represents (<b>A</b>) 12 types of OCs, (<b>B</b>) 6 main types of epithelial tumors based on the cell morphology of the tumor, which are the most common types of OCs, and 2 types of the serous type of epithelial tumors, which are (<b>C</b>) high-grade, and (<b>D</b>) low-grade.</p>
Full article ">Figure 2
<p>Representation of enzymatic and non-enzymatic antioxidants and balance between ROS and antioxidants. Created with BioRender.com (accessed on 26 June 2024.).</p>
Full article ">Figure 3
<p>Ovulation cycle: (<b>a</b>) Ovary without a corpus luteum; (<b>b</b>) ovary with a corpus luteum. Created with BioRender.com (accessed on 26 June 2024.).</p>
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<p>Exogenous and endogenous sources of ROS generation, that lead to OS and ultimately contribute to several pathological conditions in OC.</p>
Full article ">Figure 5
<p>Schematic illustration of various ROS-mediated cell signaling pathways and their roles in OC.</p>
Full article ">Figure 6
<p>Representation of biomarkers that can be found in increased amounts in blood serum in patients with OC. CA125 (Cancer antigen 125) is currently the most used and most common biomarker for OC diagnosis and monitoring; however, there are novel biomarkers that are used, alone or in combination with CA125, for the detection and evaluation of OC, such as HE4 (Human epididymis protein 4), CA15.3 (Cancer antigen 15-3), CA72.4 (Cancer antigen 72-4), mesothelin, miRNAs, as well as autoantibodies against IL-8 (Interleukin 8), EpCAM (Epithelial cell adhesion molecule), PLAT (Tissue type plasminogen activator), c-Myc (Cellular myelocytomatosis oncogene), MDM2 (Mouse double minute 2 homolog), and HOXA7 (Homeobox A7). Created with BioRender.com (accessed on 26 June 2024.).</p>
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18 pages, 5346 KiB  
Article
Revealing Commercial Epoxy Resins’ Antimicrobial Activity: A Combined Chemical–Physical, Mechanical, and Biological Study
by Mario Rigo, Hamoun Khatami, Antonella Mansi, Anna Maria Marcelloni, Anna Rita Proietto, Alessandra Chiominto, Ilaria Amori, Annalisa Bargellini, Isabella Marchesi, Giuseppina Frezza, Francesco Lipani, Claudio Cermelli, Angelo Rossini, Marino Quaresimin, Michele Zappalorto, Alessandro Pontefisso, Matteo Pastrello, Daniele Rossetto, Michele Modesti, Paolo Sgarbossa and Roberta Bertaniadd Show full author list remove Hide full author list
Polymers 2024, 16(18), 2571; https://doi.org/10.3390/polym16182571 - 11 Sep 2024
Viewed by 486
Abstract
In our continuing search for new polymer composites with antimicrobial activity, we observed that even unmodified epoxy resins exhibit significant activity. Considering their widespread use as starting materials for the realization of multifunctional nanocomposites with excellent chemical and mechanical properties, it was deemed [...] Read more.
In our continuing search for new polymer composites with antimicrobial activity, we observed that even unmodified epoxy resins exhibit significant activity. Considering their widespread use as starting materials for the realization of multifunctional nanocomposites with excellent chemical and mechanical properties, it was deemed relevant to uncover these unexpected properties that can lead to novel applications. In fact, in places where the contact with human activities makes working surfaces susceptible to microbial contamination, thus jeopardizing the sterility of the environment, their biological activity opens the way to their successful application in minimizing healthcare-associated infections. To this end, three commercial and widely used epoxy resins (DGEBA/Elan-TechW 152LR, 1; EPIKOTETM Resin MGS®/EPIKURETM RIM H 235, 2 and MC152/EW101, 3) have been investigated to determine their antibacterial and antiviral activity. After 24 h, according to ISO 22196:2011, resins 1 and 2 showed a high antibacterial efficacy (R value > 6.0 log reduction) against Staphylococcus aureus and Escherichia coli. Resin 2, prepared according to the ratio epoxy/hardener indicated by the supplier (sample 2a) and with 10% w/w hardener excess (sample 2b), exhibited an intriguing virucidal activity against Herpes Simplex Virus type-1 and Human Coronavirus type V-OC43 as a surrogate of SARS-CoV-2. Full article
(This article belongs to the Special Issue Antimicrobial Properties of Polymers and Polypeptides)
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Figure 1

Figure 1
<p><sup>1</sup>H NMR spectra in CDCl<sub>3</sub> of the epoxy precursors. The signals are highlighted by different symbols: * bis-phenol-A epichlorohydrin; ∘ bis-phenol-F epichlorohydrin.</p>
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<p><sup>1</sup>H NMR spectra in CDCl<sub>3</sub> in the range 0.5–2.0 ppm of the Elan-TechW 152LR (H<sub>DGEBA</sub>) hardener and the amines: A1 = 3-aminomethyl-3,5,5-trimethylcyclohexylamine; A2 = 4,4′-methylenebis-cyclohexylamine.</p>
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<p>FTIR spectra of the samples <b>1a</b>, <b>2a</b>, and <b>3</b> in the range 1700–600 cm<sup>−1</sup>.</p>
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<p>Ultimate tensile strength evaluated from dog-bone specimens. Error bar is determined as standard deviation.</p>
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<p>Young modulus evaluated from dog-bone specimens. Error bar is determined as standard deviation.</p>
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<p>Fracture toughness evaluated as K<sub>IC</sub> from compact-tension specimens. Error bar is determined as standard deviation.</p>
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<p>Stress–strain curves obtained from dog-bone specimen testing. For each material, a representative curve is plotted.</p>
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<p>Force–displacement curves obtained from CT specimen testing. For each material, a representative curve is plotted.</p>
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<p>Bactericidal activity of three epoxy resins towards <span class="html-italic">S. aureus</span> and <span class="html-italic">E. coli</span>: MC152 = <b>3</b>; DGEBA = <b>1a</b>; EPIKOTE = <b>2a</b>. The number of bacteria was quantified immediately after inoculation (T0) and after 24 h of incubation (T24) compared to control (PP). The mean value of at least 3 experiments ± SD is presented. Differences with respect to controls were marked with asterisk (*) and defined as statistically significant at *** <span class="html-italic">p</span> &lt; 0.001; not significant (ns). • No bacteria colonies detected.</p>
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<p><span class="html-italic">Staphylococcus aureus</span> and <span class="html-italic">Escherichia coli</span> colonies at T0 and after 24 h contact with the three resins: <b>1a</b> (DGEBA), <b>2a</b> (EPIKOTE), and <b>3</b> (MC152).</p>
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<p>Virucidal activity of the <b>2a</b> (EPIKOTE) and <b>2b</b> (EPIKOTE with an excess of curing agent) resins against HSV-1 and HCoV-OC43 immediately after inoculation (T0) and after 1 h (T1) and 24 h (T24) of incubation compared to controls, according to the two different experimental protocols. (<b>A</b>) <b>2b</b> resin against HSV-1, contact test; (<b>B</b>) <b>2b</b> resin against HSV-1, release test; (<b>C</b>) <b>2b</b> resin against HCoV-OC43, contact test; (<b>D</b>) <b>2b</b> resin against HCoV-OC43, release test; (<b>E</b>) <b>2a</b> resin against HSV-1, contact test; and (<b>F</b>) <b>2a</b> resin against HSV-1, release test. The mean value of at least three experiments ± SD is presented. Differences with respect to controls were marked with an asterisk and defined as statistically significant at * <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>Virucidal activity of resin <b>2b</b> against HSV-1. The evaluations were carried out according to the procedure described in <a href="#sec2-polymers-16-02571" class="html-sec">Section 2</a>.</p>
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15 pages, 3758 KiB  
Article
Ensquared Energy and Optical Centroid Efficiency in Optical Sensors: Part 2, Primary Aberrations
by Marija Strojnik, Robert Martin and Yaujen Wang
Photonics 2024, 11(9), 855; https://doi.org/10.3390/photonics11090855 - 10 Sep 2024
Viewed by 312
Abstract
We previously proposed that the optical centroid efficiency (OCE) might be a preferred figure-of-merit to the enclosed energy of a rectangular pixel (EOD) for an instrument subject to unpredictable environmental jitter and alignment conditions. Here we follow the same [...] Read more.
We previously proposed that the optical centroid efficiency (OCE) might be a preferred figure-of-merit to the enclosed energy of a rectangular pixel (EOD) for an instrument subject to unpredictable environmental jitter and alignment conditions. Here we follow the same symbols for the corresponding quantities, particularly the width of the pixel as being equal to 2d. Here we analyze the performance of the OCE vs. the EOD for the three Seidel primary aberrations of an optical component: spherical, coma, and astigmatism, plus defocus. We show that the OCE has an approximate U-shape when graphed against the EOD, for the aberrations ranging from 0 to 1.25λ. We conclude that for pixels larger than 2d = 3λF/#, a small pixel will feature better performance when expecting jitter, misalignment, and other environmental and unpredictable conditions. When evaluating the performance of low-aberration instruments in dynamic and unpredictable environments, the choice of the lager pixel 2d = 7λF/# might be advantageous. Its selection will result in the deterioration of image resolution. Full article
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Figure 1

Figure 1
<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> for a lens with the spherical aberration (<span class="html-italic">ρ<sup>4</sup></span>-term) for a detector pixel size of 2d = <span class="html-italic">3λF/#</span>. The amount of spherical aberration decreases from the lower left corner with the value of <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">1.25λ</span> along the curve to the upper right corner with <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">0</span>.</p>
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<p>The instrument point response function <span class="html-italic">prf</span> corresponding to selected points in <a href="#photonics-11-00855-f001" class="html-fig">Figure 1</a> as a function of two orthogonal directions, x and y, or rows and columns, for the case of spherical aberration. The amount of aberration decreases from about <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">1λ</span> to <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">0.5λ</span>, going from (<b>a</b>–<b>f</b>). With the decrease in the aberration, the power in the image becomes increasingly more centralized. The figures are arranged in order of increasing energy on the detector, which corresponds to a decreasing amount of aberration. The graphs in the first row correspond to the peak in the <span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph in <a href="#photonics-11-00855-f001" class="html-fig">Figure 1</a>, while those in the second row correspond to the valley. The common features of the <span class="html-italic">prf</span>-graphs for the peak are a decreased peak value, an increased amount of the compact support, and the fact that the images carry a significant amount of aberration. The valley is characterized by a relatively high peak value, the absence of compact support, and a decreased amount of aberration. Due to the symmetry of the problem, the red line overlaps over the blue line.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> for a lens with the spherical aberration (<span class="html-italic">ρ<sup>4</sup></span>-term) for a detector pixel size of <span class="html-italic">2d</span> = <span class="html-italic">7λF/#</span>. The amount of spherical aberration decreases from the middle-left region with the value of <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">1.25λ</span> along the curve to the upper right corner with <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">0</span>.</p>
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<p>The instrument point response function <span class="html-italic">prf</span> corresponding to selected points in <a href="#photonics-11-00855-f003" class="html-fig">Figure 3</a> as a function of two orthogonal directions, x and y, or rows and columns, for the case of spherical aberration. We model a case where the detector pixel size equals <span class="html-italic">7λF/#</span>. With an increase in the aberration, the energy spreads out. The energy on detector <span class="html-italic">EOD</span> for the same pixel size decreases with increasing amount of aberration. The figures are arranged in order of increasing energy on the detector, which corresponds to a decreasing amount of aberration. Due to the symmetry of the problem, the red line overlaps over the blue line.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> for a lens with the coma aberration (a<sub>31</sub> = ρ<sup>3</sup>sinθ) for a detector pixel size of <span class="html-italic">2d</span> = <span class="html-italic">3λF/#</span>. The amount of coma aberration decreases from the upper left corner with the value of <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">1.25λ</span> along the curve to the right middle area with <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for a lens with the coma aberration (<span class="html-italic">a<sub>31</sub></span> ρ<sup>3</sup>sinθ) for a detector pixel size of 2d = <span class="html-italic">7λF/#</span>. The amount of coma aberration decreases from the lower left corner with the value of <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">1.25λ</span> along the curve to the upper right corner with <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for a lens with the astigmatism aberration (<span class="html-italic">a<sub>22</sub> ρ<sup>2</sup>cos<sup>2</sup>θ</span>) for a detector pixel size of <span class="html-italic">2d</span> = <span class="html-italic">3λF/#</span>. The first zero of the Bessel function is located at <span class="html-italic">1.22 λF/#</span>. In the absence of aberration, the pixel encloses somewhat more than the Airy disc diameter. The amount of astigmatism aberration decreases from the upper left corner with the value of <span class="html-italic">a<sub>22</sub></span> = <span class="html-italic">1.25 λ</span> along the curve to the right middle area with <span class="html-italic">a<sub>22</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for a lens with the astigmatism aberration (<span class="html-italic">a<sub>22</sub> ρ<sup>2</sup>cos<sup>2</sup>θ</span>) for a detector pixel size of <span class="html-italic">2d</span> =<span class="html-italic">7λF/#</span>. The first zero of the Bessel function is located at <span class="html-italic">1.22 λF/#</span>. In the absence of aberration, the pixel encloses <span class="html-italic">2.87</span> Airy discs (nearly 3). The amount of astigmatism aberration decreases from the upper left corner with the value of <span class="html-italic">a<sub>22</sub></span> = <span class="html-italic">1.25λ</span> along the curve to the right middle area with <span class="html-italic">a<sub>22</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for a lens with the defocus aberration (<span class="html-italic">a<sub>20</sub> ρ<sup>2</sup></span>) for a detector pixel size of <span class="html-italic">2d</span> = <span class="html-italic">3λF/#</span>. The amount of defocus aberration decreases from the upper left corner with the value of <span class="html-italic">a<sub>20</sub></span> = <span class="html-italic">1.25 λ</span> along the curve to the right middle region with <span class="html-italic">a<sub>20</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for a lens with the defocus aberration (<span class="html-italic">a<sub>20</sub></span>) for a detector pixel size of <span class="html-italic">7λF/#</span>. The amount of defocus aberration decreases along the curve from the upper left corner through the minimum and then to the upper right corner with <span class="html-italic">a<sub>20</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for the case of spherical aberration for two pixel sizes <span class="html-italic">2d</span> = <span class="html-italic">3λF/#</span> and <span class="html-italic">2d</span> = <span class="html-italic">7λF/#</span>. The first point on the left of each graph corresponds to the amount of spherical aberration, <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">1.25 λ</span>, while the last point on the right of each graph corresponds to the case of no aberration, <span class="html-italic">a<sub>40</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for the case of coma-y aberration for two pixel sizes <span class="html-italic">2d</span> = <span class="html-italic">3λF/#</span> and <span class="html-italic">2d</span> = <span class="html-italic">7λF</span>/#. The first point on the left of each graph corresponds to the amount of coma aberration, <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">1.25λ</span>, while the last point on the graph corresponds to the case of no aberration, <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">0</span>. For a large portion of the aberration under study, from about <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">0.25λ</span> to roughly <span class="html-italic">a<sub>31</sub></span> = <span class="html-italic">1.25λ</span>, the <span class="html-italic">OCE</span> seems to be independent of the amount of aberration.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph in the case of astigmatism aberration for two pixel sizes, <span class="html-italic">2d</span> = <span class="html-italic">3λF/#</span> and <span class="html-italic">2d</span> = <span class="html-italic">7λF/#</span>. The first point on the left of each graph corresponds to the amount of astigmatism aberration, <span class="html-italic">a<sub>22</sub></span> = <span class="html-italic">1.25λ</span>, while the last point on the right of the graph corresponds to the case of no aberration, <span class="html-italic">a<sub>22</sub></span> = <span class="html-italic">0</span>.</p>
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<p><span class="html-italic">OCE</span> vs. <span class="html-italic">EOD</span> graph for the case of defocus aberration for two pixel sizes <span class="html-italic">2d</span> = <span class="html-italic">3λF/#</span> and <span class="html-italic">2d</span> = <span class="html-italic">7λF/#</span>. The first point on the left of each graph corresponds to the amount of defocus aberration, <span class="html-italic">a<sub>20</sub></span> = <span class="html-italic">1.25 λ</span>, while the last point on the graph corresponds to the case of no aberration, <span class="html-italic">a<sub>20</sub></span> = <span class="html-italic">0</span>.</p>
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19 pages, 4491 KiB  
Article
Myrtus communis L. Essential Oil Exhibits Antiviral Activity against Coronaviruses
by Dar-Yin Li, Matthew G. Donadu, Taylor Shue, Georgios Dangas, Antonis Athanasiadis, Shuiyun Lan, Xin Wen, Basem Battah, Stefania Zanetti, Vittorio Mazzarello, Stefan G. Sarafianos, Marco Ferrari and Eleftherios Michailidis
Pharmaceuticals 2024, 17(9), 1189; https://doi.org/10.3390/ph17091189 - 10 Sep 2024
Viewed by 446
Abstract
Human coronaviruses are a continuous threat to the human population and have limited antiviral treatments, and the recent COVID-19 pandemic sparked interest in finding new antiviral strategies, such as natural products, to combat emerging coronaviruses. Rapid efforts in the scientific community to identify [...] Read more.
Human coronaviruses are a continuous threat to the human population and have limited antiviral treatments, and the recent COVID-19 pandemic sparked interest in finding new antiviral strategies, such as natural products, to combat emerging coronaviruses. Rapid efforts in the scientific community to identify effective antiviral agents for coronaviruses remain a focus to minimize mortalities and global setbacks. In this study, an essential oil derived from Myrtus communis L. (MEO) is effective against HCoV-229E and HCoV-OC43 virus infections in comparison to two FDA-approved drugs, Remdesivir and Nirmatrelvir. Gas-chromatography and mass spectrometry were used to identify the chemical composition of MEO. Slight antioxidant activity was observed in MEO, indicating a role in oxidative stress. A dose–response curve measuring the EC50 indicates a high potency against HCoV-229E and HCoV-OC43 virus infections on Huh7.5 cells with low cytotoxicity using a PrestoBlue cell viability assay. Our findings demonstrate that MEO exhibits potent antiviral activity against HCoV-229E and HCoV-OC43 on Huh7.5 cells within a low-cytotoxicity range, but not on SARS-CoV-2. Artificial bacterial chromosome plasmids that expressed SARS-CoV-2 used for replicon—to determine viral replication and viral assembly/egress on HEK293T/17 cells—and virus-like particles on Huh7.5-AT cells—to determine viral entry and assembly/egress—showed no antiviral activity with MEO in comparison to Remdesivir. This study reveals the potential effectiveness of MEO as an alternative natural remedy to treat human coronaviruses and a potential antiviral agent for future coronavirus infections. Full article
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Figure 1

Figure 1
<p>MEO inhibits HCoV-229E infection. (<b>A</b>) Experimental design of MEO experiment for dose–response curve. Huh7.5 cells were seeded in two 96-well plates with Remdesivir and Nirmatrelvir as antiviral controls. The experiment was performed in triplicate, and the starting concentration for MEO was 1:1000 (0.8469 mg/mL) and received a 1:2 serial dilution. The starting concentrations for Remdesivir and Nirmatrelvir were 250 nM and 25 µM, respectively, and were diluted with a 1:2 serial dilution. After HCoV-229E was added to the plates an hour after drug treatment, cells were fixed with 4% PFA one day post-infection. Immunofluorescent staining (IF) was performed to visualize infected cells using Cytation 7. (<b>B</b>) Dose–response curve showing that MEO has antiviral activity against HCoV-229E with EC<sub>50</sub> = 0.1204 mg/mL MEO concentration starting at 1:1000 (0.8469 mg/mL) with a 1:2 serial dilution and infected with 1:10 HCoV-229E virus. (<b>C</b>) Cytotoxicity assay measuring cell viability in MEO-treated Huh7.5 cells. A 1:10 (84.69 mg/mL) starting concentration for MEO was used with a 1:2 serial dilution. Huh7.5 cells treated with MEO were normalized to the untreated Huh7.5 cells.</p>
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<p>Immunofluorescent staining for HCoV-229E Spike protein. Huh7.5 cells without MEO treatment showed a mean fluorescence intensity of 22 with HCoV-229E. At a 1:2000 (0.42345 mg/mL) Myrtus concentration, the HCoV-229E viral infection has a mean fluorescence intensity of 7. Nuclei were stained with Hoechst, and HCoV-229E was stained with HCoV-229E spike protein and Alexa Fluor 488, labeled goat anti-mouse secondary antibody, and was imaged at a 1000 µm scale.</p>
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<p>MEO inhibits HCoV-OC43 infection. (<b>A</b>) Experimental layout of MEO with HCoV-OC43 infection to determine EC<sub>50</sub>. Two collagen-coated 96-wells plates were seeded with Huh7.5 cells to evaluate the dose–response curve of Remdesivir, Nirmatrelvir, and MEO. Each drug was conducted in triplicates with the starting concentration for MEO to be 1:1000 (0.8469 mg/mL) and serially diluted 1:2. The starting concentrations for Remdesivir and Nirmatrelvir were 7 µM and 25 µM, respectively, and were diluted with a 1:2 serial dilution. An hour after drug treatment, HCoV-OC43 was added, and cells were fixed with 4% PFA at 3 days post-infection. Immunofluorescent staining (IF) was performed to visualize infected cells using the Cytation 7. (<b>B</b>) A dose–response curve showed that MEO has antiviral activity against HCoV-OC43 with EC<sub>50</sub> = 1.405 mg/mL MEO concentration starting at a concentration of 1:1000 (0.8469 mg/mL) with a 1:2 serial dilution and infected with 1:20 HCoV-OC43E virus.</p>
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<p>Immunofluorescent staining for HCoV-OC43 spike protein. Huh7.5 cells without MEO treatment showed a mean fluorescence intensity of 12 with HCoV-OC43. At a 1:1000 (0.8469 mg/mL) MEO concentration, HCoV-OC43 viral infection has a mean fluorescence intensity of 4. Nuclei were stained with Hoechst and HCoV-OC43 was stained with anti-coronavirus antibody, OC-43 strain, clone 541-8F, and Alexa Fluor 488, labeled goat anti-mouse secondary antibody, and was imaged at a 1000 µm scale.</p>
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<p>MEO does not inhibit SARS-CoV-2 viral replication based on SARS-CoV-2 replicon. (<b>A</b>) Normalized SARS-CoV-2 replicon transfection to determine if MEO inhibits viral replication. Using GFP reporter in the SARS-CoV-2 replicon to calculate the percent of transfected cells, there was no difference in the number of transfected cells compared to normalized and untreated wells. NLuc activity from the SARS-CoV-2 replicon plasmid was used to quantify the amount of viral replication under MEO-treated conditions. Titration of MEO with SARS-CoV-2 replicon transfected cells showed no difference in viral replication via NLuc activity. Cell viability is not affected by SARS-CoV-2 replicon, nor by MEO cytotoxicity at the tested MEO concentrations. The relative luminescence graph validates that viral replicon is not inhibited by MEO. (<b>B</b>) Remdesivir substantially inhibited SARS-CoV-2 viral replication and normalized transfection level similar to the relative luminescence units, as untreated wells received about an eight-fold increase compared to 7.5 µM. At 15 µM of Remdesivir, cell viability dropped below 50%, exhibiting Remdesivir cytotoxicity.</p>
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<p>No inhibition against SARS-CoV-2 VLPs for MEO. (<b>A</b>) Immunofluorescence images showed no difference in VLP inhibition for untreated and MEO-treated wells at 1:200 (4.2345 mg/mL) concentration. Remdesivir inhibited SARS-CoV-2 VLP in a dose-dependent manner, which acted as positive control. To determine the percentage of cells infected with SARS-CoV-2 VLPs, the cells were counterstained with Hoechst and imaged for GFP reporter signal from the replicon plasmids and Hoechst dye using Cytation 7. All images are in 1000 µm scale. (<b>B</b>) The VLP transduction assay with MEO treatment showed similar infection levels as untreated wells. At 1:100 (8.469 mg/mL) concentration of MEO, cells were not viable, and viral replication remained consistent. (<b>C</b>) Remdesivir showed potent inhibition against SARS-CoV-2 VLP as an inhibitor of SARS-CoV-2 viral replication.</p>
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<p>MEO treatment has little impact SARS-CoV-2 Omicron BA.1 VLP formation/release. SARS-CoV-2 BA.1 VLPs were produced in HEK293T/17 cells that were pre-treated with either a 1:1000 (0.8469 mg/mL) or 1:500 (1.6938 mg/mL) concentration of MEO in DMEM (10% FBS + 1% NEAA) to assess the effect of MEO on the formation of infectious VLPs. VLPs were harvested via centrifugation and concentrated 20× using 100,000 MW Amicon filter units. VLPs were titrated on Huh7.5-AT cells at a starting dilution of 1:5 and continued with a 1:2 dilution. At one day post-transduction, the cells were counterstained with 1:5000 Hoechst dye and imaged using Cytation 7 for the number of GFP+ and total cells. Then, the cell culture supernatant was measured for NLuc activity. (<b>A</b>) Hoechst staining shows that there was a slight decrease in cell viability for VLPs formed in the presence of MEO treatment in a dose-dependent manner (<span class="html-italic">p</span> &lt; 0.0001). (<b>B</b>) Analysis of the GFP+ cells representing cells successfully transduced with VLP and undergoing replication of the replicon plasmid showed minor differences between MEO-treated and untreated VLPs, but only at the highest dilutions of VLP delivery (<span class="html-italic">p</span> = 0.01). (<b>C</b>) NLuc activity shows no difference between MEO VLPs and untreated VLPs. Overall, MEO treatment during VLP production has no effect on nascent VLP particles.</p>
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13 pages, 1829 KiB  
Article
French Bean Production as Influenced by Biochar and Biochar Blended Manure Application in Two Agro-Ecological Zones of Rwanda
by Solange Uwingabire, Shaban Athuman Omar Chamshama, Jean Nduwamungu and Gert Nyberg
Agronomy 2024, 14(9), 2020; https://doi.org/10.3390/agronomy14092020 - 5 Sep 2024
Viewed by 351
Abstract
Biochar (B) has low nutrient content and is recalcitrant to biodegradation. Supplementing B with a fast-releasing nutrient source may improve soil fertility and physical conditions and increase crop productivity. A three-season field study was conducted on sandy loam and sandy clay loam textured [...] Read more.
Biochar (B) has low nutrient content and is recalcitrant to biodegradation. Supplementing B with a fast-releasing nutrient source may improve soil fertility and physical conditions and increase crop productivity. A three-season field study was conducted on sandy loam and sandy clay loam textured soils to investigate the effect of B mixed with livestock manure (LM) on soil properties (pH, organic carbon (OC), cation exchange capacity (CEC), total Nitrogen (TN), available Phosphorus (Avail P)), and French bean yield (Phaseolus vulgaris L.) in Rwanda. The study used a factorial randomized block design with four replications. Treatments comprised three levels of B (0, 1, and 3 t/ha) and three levels of LM (0, 1, and 3 t/ha). Biochar was used from S. sesban, G. sepium, A. angustissima, Eucalyptus, and Grevillea sp., prepared using a drum kiln, while LM was prepared using the pit method. The Analysis of Variance (ANOVA), Tukey (HSD) function at p < 0.05, and linear mixed-effects model were performed in R software version 4.3.3 (R Core Team, 2024). The analysis showed that the treated plots significantly increased French bean yield compared to the control plots, with the highest value found in plots treated with 3 t/ha. The combined plots showed an increased yield compared to sole Biochar or manure. The seasonal increase has been observed, with percentage increases recorded as follows: 16%, 33.56%, 173.06% in sole B plots; 40.28%, 14.43%, and 11.76% in sole LM plots and 125%, 156%, and 209.8% in B + LM plots for season 1, 2, and 3, respectively. Furthermore, the results indicated that the application of B alone or combined with LM significantly enhanced soil pH, OC, TN, avail P, and CEC with the pH ranging from 6.77 to 5.43 for B alone, 6.7–5.35 for LM alone, 8.53–6.06 for B-LM plots, and 4.34–3.78 for control plots. Applying Biochar, either alone or in combination with LM, at a low rate demonstrated positive effects on French bean yield and soil nutrients in smallholder farmers. This study encourages using natural materials such as B and LM to improve soil fertility and increase vegetable production while reducing chemical fertilizers that can cause pollution and damage the environment. Full article
(This article belongs to the Special Issue Soil Health and Crop Management in Conservation Agriculture)
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<p>(<b>A</b>). (a) Biochar drum kiln, (b) inner kiln, (c) drum kiln lid with chimney column, (d) inner kiln lid, (e) loaded fuel in the inner drum kiln, (f) ignited fuel, (g) drum kiln design. (<b>B</b>). produced Biochar from the kiln.</p>
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<p>Effect of B amendments and LM on green pod yield, within (<b>a</b>) control, (<b>b</b>) LM plots, (<b>c</b>) B alone, and (<b>d</b>) B-LM. Bars represent values of four replicates and contain a standard error of means (n = 4). Bars with different letters differ significantly from each other at <span class="html-italic">p</span> &lt; 0.05. B1E/B3E: Biochar produced from Eucalyptus wood and applied at 1 or 3 tons/ha. B1Gl: Biochar produced from Gliricidia wood and applied at 1 or 3 tons/ha. B1S/B3S: Biochar produced from Sesbania wood and applied at 1 or 3 tons/ha. B1Gr: Biochar produced from Grevillea wood and applied at 1 or 3 tons/ha. B3A: Biochar produced from Acacia wood and applied at 1 or 3 tons/ha.</p>
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<p>Effect of Biochar amendments and LM on Soil pH and Bars represents values of four replicates and contain a standard error of means (n = 4). Bars with different letters differ significantly from each other at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of B amendments and LM on soil OC (percentage). Bars represent values of four replicates and contain a standard error of means (n = 4). Bars with different letters differ significantly from each other at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of B amendments and LM on (<b>a</b>) soil TN (%) and (<b>b</b>) available P (ppm). Bars represent values of four replicates and contain a standard error of means (n = 4). Bars with different letters differ significantly from each other at <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Effect of B amendments and LM on EC. Bars represent values of four replicates and contain a standard error of means (n = 4). Bars with different letters differ significantly from each other at <span class="html-italic">p</span> &lt; 0.05.</p>
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25 pages, 1386 KiB  
Review
Aberrant SWI/SNF Complex Members Are Predominant in Rare Ovarian Malignancies—Therapeutic Vulnerabilities in Treatment-Resistant Subtypes
by Yue Ma, Natisha R. Field, Tao Xie, Sarina Briscas, Emily G. Kokinogoulis, Tali S. Skipper, Amani Alghalayini, Farhana A. Sarker, Nham Tran, Nikola A. Bowden, Kristie-Ann Dickson and Deborah J. Marsh
Cancers 2024, 16(17), 3068; https://doi.org/10.3390/cancers16173068 - 3 Sep 2024
Viewed by 886
Abstract
SWI/SNF (SWItch/Sucrose Non-Fermentable) is the most frequently mutated chromatin-remodelling complex in human malignancy, with over 20% of tumours having a mutation in a SWI/SNF complex member. Mutations in specific SWI/SNF complex members are characteristic of rare chemoresistant ovarian cancer histopathological subtypes. Somatic mutations [...] Read more.
SWI/SNF (SWItch/Sucrose Non-Fermentable) is the most frequently mutated chromatin-remodelling complex in human malignancy, with over 20% of tumours having a mutation in a SWI/SNF complex member. Mutations in specific SWI/SNF complex members are characteristic of rare chemoresistant ovarian cancer histopathological subtypes. Somatic mutations in ARID1A, encoding one of the mutually exclusive DNA-binding subunits of SWI/SNF, occur in 42–67% of ovarian clear cell carcinomas (OCCC). The concomitant somatic or germline mutation and epigenetic silencing of the mutually exclusive ATPase subunits SMARCA4 and SMARCA2, respectively, occurs in Small cell carcinoma of the ovary, hypercalcaemic type (SCCOHT), with SMARCA4 mutation reported in 69–100% of SCCOHT cases and SMARCA2 silencing seen 86–100% of the time. Somatic ARID1A mutations also occur in endometrioid ovarian cancer (EnOC), as well as in the chronic benign condition endometriosis, possibly as precursors to the development of the endometriosis-associated cancers OCCC and EnOC. Mutation of the ARID1A paralogue ARID1B can also occur in both OCCC and SCCOHT. Mutations in other SWI/SNF complex members, including SMARCA2, SMARCB1 and SMARCC1, occur rarely in either OCCC or SCCOHT. Abrogated SWI/SNF raises opportunities for pharmacological inhibition, including the use of DNA damage repair inhibitors, kinase and epigenetic inhibitors, as well as immune checkpoint blockade. Full article
(This article belongs to the Special Issue Rare Gynecological Cancers)
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<p>The distribution of loss-of-function alterations in mammalian SWI/SNF (mSWI/SNF) chromatin-remodelling complex members across ovarian cancer histopathological subtypes. The schematic uses the canonical BAF (cBAF) formation of the SWI/SNF complex to depict subunit involvement. A loss-of-function alteration is defined as the presence of a pathogenic mutation in the encoding gene and/or the loss of corresponding protein expression. “Higher association with the SWI/SNF complex” is defined as subtypes where over 20% of cases have alterations in at least one complex member. An exception was made for undifferentiated/dedifferentiated ovarian cancers due to limited incidence reporting. Complex members identified as altered in over 40% of a specific subtype are indicated in bold and underline. An alteration is presented as ‘rare’ if less than 10 cases were reported in the published literature or large cohort analyses (N ≥ 100) report an incidence less than 10%. Distribution is based on data in Tables 2 and 3 and Tessier-Cloutier and colleagues [<a href="#B30-cancers-16-03068" class="html-bibr">30</a>]. Created with <a href="http://www.BioRender.com" target="_blank">www.BioRender.com</a>, Access Date: 9 August 2024.</p>
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<p>Therapeutic drugs investigated in patients with OCCC or SCCOHT and pre-clinical models of these tumours. Molecular targeted therapies including immune checkpoint inhibitors, epigenetic inhibitors, PARP inhibitors and kinase inhibitors have been trialled in patients with OCCC or SCCOHT, as well as in vitro and in vivo pre-clinical models ^ of these malignancies. Where patients did not respond to, or tolerate, a drug, this is indicated by <sup>#</sup>. Drugs listed were administered to patients or tested in pre-clinical models either as monotherapies or in conjunction with other drug(s). A higher TMB is reported for OCCC, indicated by a green arrow, while SCCOHT has a low TMB, indicated by a red arrow. Both OCCC and SCCOHT have TILs. Both tumour types have high levels of PD-L1. Therapeutic drugs tested in OCCC patients, include pembrolizumab [<a href="#B154-cancers-16-03068" class="html-bibr">154</a>], durvalumab [<a href="#B155-cancers-16-03068" class="html-bibr">155</a>], toripalimab [<a href="#B156-cancers-16-03068" class="html-bibr">156</a>], olaparib [<a href="#B157-cancers-16-03068" class="html-bibr">157</a>], everolimus [<a href="#B156-cancers-16-03068" class="html-bibr">156</a>], and dasatinib [<a href="#B158-cancers-16-03068" class="html-bibr">158</a>], and in pre-clinical models include iBET-762 [<a href="#B159-cancers-16-03068" class="html-bibr">159</a>], ACY1215 [<a href="#B160-cancers-16-03068" class="html-bibr">160</a>], CPI203 [<a href="#B159-cancers-16-03068" class="html-bibr">159</a>], ceralasertib [<a href="#B161-cancers-16-03068" class="html-bibr">161</a>] and tulmimetostat [<a href="#B162-cancers-16-03068" class="html-bibr">162</a>]. Therapeutic drugs tested in SCCOHT patients include nivolumab [<a href="#B163-cancers-16-03068" class="html-bibr">163</a>], ipilimumab [<a href="#B163-cancers-16-03068" class="html-bibr">163</a>], pembrolizumab [<a href="#B103-cancers-16-03068" class="html-bibr">103</a>,<a href="#B164-cancers-16-03068" class="html-bibr">164</a>], durvalumab [<a href="#B108-cancers-16-03068" class="html-bibr">108</a>], olaparib [<a href="#B108-cancers-16-03068" class="html-bibr">108</a>,<a href="#B163-cancers-16-03068" class="html-bibr">163</a>], tazemetostat [<a href="#B165-cancers-16-03068" class="html-bibr">165</a>], abemaciclib [<a href="#B163-cancers-16-03068" class="html-bibr">163</a>], palbociclib [<a href="#B108-cancers-16-03068" class="html-bibr">108</a>] and ponatinib [<a href="#B163-cancers-16-03068" class="html-bibr">163</a>], and in pre-clinical models include GSK126 [<a href="#B166-cancers-16-03068" class="html-bibr">166</a>], OTX015 [<a href="#B167-cancers-16-03068" class="html-bibr">167</a>], tazemetostat [<a href="#B166-cancers-16-03068" class="html-bibr">166</a>,<a href="#B168-cancers-16-03068" class="html-bibr">168</a>] and palbociclib [<a href="#B169-cancers-16-03068" class="html-bibr">169</a>]. Drugs trialled in patients were on occasion administered either sequentially, informed by patient response, or together. Drug combinations of this nature in OCCC patients included pembrolizumab (combined with bevacizumab and cyclophosphamide) [<a href="#B154-cancers-16-03068" class="html-bibr">154</a>], pembrolizumab (combined with bevacizumab and olaparib) [<a href="#B157-cancers-16-03068" class="html-bibr">157</a>], and toripalimab (combined with everolimus) [<a href="#B156-cancers-16-03068" class="html-bibr">156</a>]. Drug combinations trialled in SCCOHT patients included pembrolizumab (following cycles of cisplatin/etoposide and carboplatin/paclitaxel) [<a href="#B103-cancers-16-03068" class="html-bibr">103</a>], nivolumab and ipilimumab (followed by ponatinib, abemaciclib and olaparib) [<a href="#B163-cancers-16-03068" class="html-bibr">163</a>]. In a single case report, a SCCOHT patient was administered six lines of chemotherapy of multiple drugs that included durvalumab, olaparib and palbociclib [<a href="#B108-cancers-16-03068" class="html-bibr">108</a>]. Abbreviations: ATR, Ataxia-telangiectasia-mutated (ATM) and RAD3-related; BET, bromo- and extra-terminal domain family; CDK4/6, cyclin-dependent kinases 4 and 6; CTLA-4, cytotoxic T-lymphocyte-associated protein 4; EZH1/2, Enhancer Of Zeste 1/2 Polycomb repressive complex 2 subunit; HDAC6, histone deacetylase 6; mTOR, mammalian target of rapamycin; OCCC, ovarian clear cell carcinoma; PARP, Poly (ADP-ribose) polymerase; PD-1, programmed cell death protein 1; PD-L1, programmed death-ligand 1; SCCOHT, Small cell carcinoma of the ovary, hypercalcaemic type; TILS, Tumour-infiltrating lymphocytes; TMB, tumour mutational burden. Both tumour types also have high levels of PD-L1. Created with <a href="http://www.BioRender.com" target="_blank">www.BioRender.com</a>, Access Date: 9 August 2024.</p>
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25 pages, 10450 KiB  
Article
Framework for Regional to Global Extension of Optical Water Types for Remote Sensing of Optically Complex Transitional Water Bodies
by Elizabeth C. Atwood, Thomas Jackson, Angus Laurenson, Bror F. Jönsson, Evangelos Spyrakos, Dalin Jiang, Giulia Sent, Nick Selmes, Stefan Simis, Olaf Danne, Andrew Tyler and Steve Groom
Remote Sens. 2024, 16(17), 3267; https://doi.org/10.3390/rs16173267 - 3 Sep 2024
Viewed by 545
Abstract
Water quality indicator algorithms often separate marine and freshwater systems, introducing artificial boundaries and artifacts in the freshwater to ocean continuum. Building upon the Ocean Colour- (OC) and Lakes Climate Change Initiative (CCI) projects, we propose an improved tool to assess the interactions [...] Read more.
Water quality indicator algorithms often separate marine and freshwater systems, introducing artificial boundaries and artifacts in the freshwater to ocean continuum. Building upon the Ocean Colour- (OC) and Lakes Climate Change Initiative (CCI) projects, we propose an improved tool to assess the interactions across river–sea transition zones. Fuzzy clustering methods are used to generate optical water types (OWT) representing spectrally distinct water reflectance classes, occurring within a given region and period (here 2016–2021), which are then utilized to assign membership values to every OWT class for each pixel and seamlessly blend optimal in-water algorithms across the region. This allows a more flexible representation of water provinces across transition zones than classic hard clustering techniques. Improvements deal with expanded sensor spectral band-sets, such as Sentinel-3 OLCI, and increased spatial resolution with Sentinel-2 MSI high-resolution data. Regional clustering was found to be necessary to capture site-specific characteristics, and a method was developed to compare and merge regional cluster sets into a pan-regional representative OWT set. Fuzzy clustering OWT timeseries data allow unique insights into optical regime changes within a lagoon, estuary, or delta system, and can be used as a basis to improve WQ algorithm performance. Full article
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<p>A flow chart summarizing the methodological approach to develop a framework for the regional to global extension of optical water type (OWT) classes.</p>
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<p>Locations of the six sites across Europe (<b>a</b>), together with true color images of each site showing study area bounds (red box) for the (<b>b</b>) Tagus and Sado Estuaries, (<b>c</b>) Elbe Estuary and German Bight, (<b>d</b>) Curonian Lagoon, (<b>e</b>) Tamar Estuary and Plymouth Sound, (<b>f</b>) Venice Lagoon and northwestern Adriatic Sea, and (<b>g</b>) the Danube Delta and Razelm–Sinoe Lagoon System. The largest population center closest to the transitional water system for each site is indicated (gray text).</p>
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<p>The training data spatial distribution (red dots) for a single day overlaid on the OLCI timeseries spatial grid, colored to represent the value weighting relative to the coastline used for stratified random sampling frequency (from dark blue, being 10%, to yellow, at 100% random sampling frequency).</p>
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<p>Regional optical water type (OWT) clusters created from Tagus OLCI training data, showing spectra for each cluster together with spectra distribution for those training data with dominant membership for that particular cluster (cluster center is solid red line, +/−1 standard deviation in gray shading, percentiles as broken lines with rainbow colors). Lower plot shows overlaid cluster center spectra (solid line) for all OWT classes with +/−1 standard deviation in shading of same color.</p>
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<p>A comparison of log-transformed reflectance histogram and quantile–quantile (QQ) plots for single bands from the full training dataset (<b>left</b>) and for a particular cluster (here OWT 2, <b>right</b>). Through clustering, multimodality has been reduced and data better follow a normal distribution, as indicated by the disappearance of steps in the cluster QQ plots. The red line in the QQ plots is the standardized line, representing the expected order statistics scaled by the standard deviation of the given sample and then adding the mean.</p>
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<p>OLCI optical water type (OWT) cluster membership (%) distribution across the Tagus study site on 6 September 2020, with dark blue representing low membership to that cluster and yellow high cluster membership (masked water pixels are light gray).</p>
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<p>Regional optical water type (OWT) clusters created from the Tagus MSI training data, showing spectra for each cluster together with the spectra distribution for those training data with a dominant membership for that particular cluster (cluster center is solid red line, +/−1 standard deviation in gray shading, percentiles as broken lines with rainbow colors). The lower plot shows overlaid cluster center spectra (solid line) from all OWT classes with +/−1 standard deviation in the shading of the same color.</p>
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<p>The dominant MSI regional optical water type (OWT), based on summed membership for each pixel over the entire timeseries (2016 to 2021).</p>
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<p>The dominant MSI regional optical water type (OWT), based on summed membership for a particular month, for each pixel over the entire timeseries (2016 to 2021). Data from March, representing peak Tagus River discharge, are on the left and on the right from August when river discharge is at its lowest.</p>
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<p>Left column contains example subset of grouped OLCI regional optical water type (OWT) cluster spectra (solid line, standard deviation as shaded region) based on Adjusted Rand Index ≥ 0.35 threshold groups. Full grouping set is presented in <a href="#app1-remotesensing-16-03267" class="html-app">Supplemental Material</a>. Grouped regional OWT spectra were used to estimate initialization cluster center for semi-supervised global c-means analysis; right column contains associated OLCI pan-regional cluster spectra.</p>
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<p>Constrained Euclidean distance memberships (%) to the 18 OLCI pan-regional optical water type (OWT) classes for a single date (6 September 2020) from the Tagus Estuary.</p>
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<p>Dominant optical water type (OWT), based on summed membership for each pixel, over timeseries (2016 to 2021) for OLCI pan-regional (<b>left panel</b>) as compared with OC-CCI v6.0 1 km product (<b>right panel</b>).</p>
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<p>Left column contains example subset of grouped MSI regional optical water type (OWT) cluster spectra (solid line, standard deviation as shaded region) based on Adjusted Rand Index ≥ 0.35 threshold groups. Full grouping set is presented in <a href="#app1-remotesensing-16-03267" class="html-app">Supplemental Material</a>. Grouped regional OWT spectra were used to estimate initialization cluster center for semi-supervised global c-means analysis; right column contains associated MSI pan-regional cluster spectra.</p>
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<p>A comparison of MSI regional (<b>left column</b>) and pan-regional (<b>right column</b>) cluster set geographic coverage by dominant optical water type (OWT) for three study sites, based on dominant summed membership for the month (from full timeseries 2016 to 2021) with low river discharge for that site. Sites are (<b>a</b>) the Danube Delta and Razelm–Sinoe Lagoon System for the low river discharge month December, (<b>b</b>) the Tagus and Sado Estuaries for the month of August, and (<b>c</b>) the Tamar Estuary and Plymouth Sound for September.</p>
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14 pages, 3384 KiB  
Article
PM10 Organic Aerosol Fingerprints by Using Liquid Chromatography Orbitrap Mass Spectrometry: Urban vs. Suburban in an Eastern Mediterranean Medium-Sized Coastal City
by Evangelos Stergiou, Anastasia Chrysovalantou Chatziioannou, Spiros A. Pergantis and Maria Kanakidou
Air 2024, 2(3), 311-324; https://doi.org/10.3390/air2030018 - 3 Sep 2024
Viewed by 592
Abstract
This study compares the PM10 (particulate matter of diameter smaller than 10 μm) organic aerosol composition between urban and suburban stations in Heraklion, Crete, during winter 2024 in order to highlight the impact of local anthropogenic activities on urban atmospheric particulate matter pollution. [...] Read more.
This study compares the PM10 (particulate matter of diameter smaller than 10 μm) organic aerosol composition between urban and suburban stations in Heraklion, Crete, during winter 2024 in order to highlight the impact of local anthropogenic activities on urban atmospheric particulate matter pollution. Using an HPLC-ESI-MS Orbitrap analyzer (High Performance Liquid Chromatography-Electrospray Ionization-Mass Spectrometry) in full MS scan mode at a resolution of 140,000, 48 daily aerosol filter extracts were analyzed in both positive and negative modes, resulting in the detection of 2809 and 3823 features, respectively. Features with at least five times higher intensity in the urban environment compared to the suburban, and p < 0.05, were deemed significant. A correlation with black carbon (r > 0.6) was observed for 71% of significant urban features in positive mode. These features showed a predominance of low O:C ratios (<0.2) and the majority were classified as intermediate volatility organic compounds (IVOCs), indicating fresh primary emissions. A clear urban–suburban distinction was shown by PCA of positive mode features, unlike the negative mode features. Regarding the total intensity of the features, urban samples were on average 55% higher than suburban samples in positive mode and 39% higher in negative mode. This study reveals the molecular profile of locally emitted combustion related organics observed in positive mode in an urban environment. Full article
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<p>Satellite view of Heraklion, Crete, Greece. Urban station (<b>right</b>) (35.332820 N, 25.138231 E, 45 m altitude). Suburban station (<b>left</b>) (35.308542 N, 25.080084 E, 95 m altitude). The distance between the 2 stations is 5.9 km. The wind roses are drawn based on local winds registered at each station, averaged for the period studied. Sixteen wind direction classes are considered, wind speed units are in m/s and wind calm corresponds to 0.1 m/s.</p>
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<p>Total intensity for both modes and for the two stations. The relative intensity was set as 1 for the sample with the highest intensity.</p>
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<p>Results of 3d PCA for urban (red) and suburban samples (green) using positive ion mode features (<b>left</b>) and negative ion mode features (<b>right</b>). Log10 data transformation was applied.</p>
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<p>Comparison of volcano plots of urban and suburban samples for the positive ion mode (<b>left</b>) and the negative ion mode (<b>right</b>). The upper-right rectangular area in both plots highlights the significant urban features, and the upper-left area highlights the significant suburban features. FC = ratio of urban-to-suburban average intensities for each feature.</p>
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<p>Combined abundance of the positive mode urban significant features related to combustion as a function of the number of carbon atoms (<b>left</b>). The <span class="html-italic">m/z</span> histogram for these features (<b>right</b>).</p>
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<p>Combined abundance of the positive mode urban significant features related to combustion as a function of the number of nitrogen atoms (<b>left</b>) and oxygen atoms (<b>right</b>) in the calculated elemental composition of the respective feature.</p>
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<p>(<b>left</b>) Relative intensity of each volatility class, for the positive mode urban significant features related to combustion. (<b>right</b>) The estimated O:C ratio per volatility class from volatile (VOC) to extremely low volatility compounds (ELVOC).</p>
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16 pages, 2432 KiB  
Article
A Novel Transformer-CNN Approach for Predicting Soil Properties from LUCAS Vis-NIR Spectral Data
by Liying Cao, Miao Sun, Zhicheng Yang, Donghui Jiang, Dongjie Yin and Yunpeng Duan
Agronomy 2024, 14(9), 1998; https://doi.org/10.3390/agronomy14091998 - 2 Sep 2024
Viewed by 560
Abstract
Soil, a non-renewable resource, requires continuous monitoring to prevent degradation and support sustainable agriculture. Visible-near-infrared (Vis-NIR) spectroscopy is a rapid and cost-effective method for predicting soil properties. While traditional machine learning methods are commonly used for modeling Vis-NIR spectral data, large datasets may [...] Read more.
Soil, a non-renewable resource, requires continuous monitoring to prevent degradation and support sustainable agriculture. Visible-near-infrared (Vis-NIR) spectroscopy is a rapid and cost-effective method for predicting soil properties. While traditional machine learning methods are commonly used for modeling Vis-NIR spectral data, large datasets may benefit more from advanced deep learning techniques. In this study, based on the large soil spectral library LUCAS, we aimed to enhance regression model performance in soil property estimation by combining Transformer and convolutional neural network (CNN) techniques to predict 11 soil properties (clay, silt, pH in CaCl2, pH in H2O, CEC, OC, CaCO3, N, P, and K). The Transformer-CNN model accurately predicted most soil properties, outperforming other methods (partial least squares regression (PLSR), random forest regression (RFR), support vector machine regression (SVR), Long Short-Term Memory (LSTM), ResNet18) with a 10–24 percentage point improvement in the coefficient of determination (R2). The Transformer-CNN model excelled in predicting pH in CaCl2, pH in H2O, OC, CaCO3, and N (R2 = 0.94–0.96, RPD > 3) and performed well for clay, sand, CEC, P, and K (R2 = 0.77–0.85, 2 < RPD < 3). This study demonstrates the potential of Transformer-CNN in enhancing soil property prediction, although future work should aim to optimize computational efficiency and explore a wider range of applications to ensure its utility in different agricultural settings. Full article
(This article belongs to the Special Issue The Use of NIR Spectroscopy in Smart Agriculture)
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<p>The raw spectra are shown on the left, and the spectra after preprocessing are shown on the right, with each image containing 19,036 spectral lines.</p>
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<p>Transformer Prediction Module.</p>
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<p>Scatter plot of true and predicted values.</p>
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<p>The radar plot of R<sup>2</sup> is shown on the left, while the radar plot of RMSE is displayed on the right.</p>
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<p>Related Documents R<sup>2</sup> Comparison Effect Graph (Related Documents: (Singh et al., 2019) [<a href="#B59-agronomy-14-01998" class="html-bibr">59</a>], (Zhong et al., 2021) [<a href="#B23-agronomy-14-01998" class="html-bibr">23</a>], (Gruszczyński et al., 2022) [<a href="#B25-agronomy-14-01998" class="html-bibr">25</a>], Tavakoli et al., 2023) [<a href="#B26-agronomy-14-01998" class="html-bibr">26</a>].).</p>
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22 pages, 5157 KiB  
Article
Wave-Current Interaction Effects on the OC4 DeepCwind Semi-Submersible Floating Offshore Wind Turbine
by Thomas P. Mazarakos and Spyridon A. Mavrakos
J. Mar. Sci. Eng. 2024, 12(9), 1509; https://doi.org/10.3390/jmse12091509 - 1 Sep 2024
Viewed by 622
Abstract
In order to investigate the hydrodynamic performances of semi-submersible type floating offshore wind turbines (FOWTs), particularly the effect of body-wave-current interaction, the OC4 FOWT is considered in the presence of co-existing regular wave and uniform current fields. The wind loads are not considered [...] Read more.
In order to investigate the hydrodynamic performances of semi-submersible type floating offshore wind turbines (FOWTs), particularly the effect of body-wave-current interaction, the OC4 FOWT is considered in the presence of co-existing regular wave and uniform current fields. The wind loads are not considered at this stage. The problem is treated in the framework of potential-flow theory in the frequency domain, assuming waves of small steepness, and the solution is obtained by using a perturbation expansion method for the diffraction potential with respect to the normalized current speed. Analytical and numerical formulations have been used to treat the inhomogeneous free-surface boundary condition involved in the hydrodynamic problem formulation for the derivation of the associated perturbation potential. The hydrodynamic loads were obtained after evaluating the pressure field around the multi-body configuration using three different computer codes. The results from the three computer codes compare very well with each other and with the numerical predictions of other investigators. Finally, the mean second-order drift forces are calculated by superposing their zero-current values with the corresponding current-dependent first-order corrections, with the latter being evaluated using a ‘heuristic’ approach. Full article
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<p>Photorealistic representation of the floating structure.</p>
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<p>(<b>a</b>) Fx horizontal wave exciting force; (<b>b</b>) Fz vertical wave exciting force; (<b>c</b>) My wave exciting moment. Robertson et. al. 2014 [<a href="#B6-jmse-12-01509" class="html-bibr">6</a>].</p>
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<p>(<b>a</b>) Fx horizontal wave exciting force; (<b>b</b>) Fy horizontal wave exciting force; (<b>c</b>) Fz vertical wave exciting force; (<b>d</b>) Mx wave exciting moment; (<b>e</b>) My wave exciting moment; (<b>f</b>) Mz wave exciting moment.</p>
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<p>(<b>a</b>) A<sub>11</sub> added mass; (<b>b</b>) A<sub>33</sub> added mass; (<b>c</b>) A<sub>55</sub> added mass. Robertson et. al. 2014 [<a href="#B6-jmse-12-01509" class="html-bibr">6</a>].</p>
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<p>(<b>a</b>) B<sub>11</sub> hydrodynamic damping; (<b>b</b>) B<sub>33</sub> hydrodynamic damping; (<b>c</b>) B<sub>55</sub> hydrodynamic damping. Robertson et. al. 2014 [<a href="#B6-jmse-12-01509" class="html-bibr">6</a>].</p>
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<p>(<b>a</b>) Surge RAO with wave; (<b>b</b>) heave RAO with wave; (<b>c</b>) pitch RAO with wave.</p>
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<p>(<b>a</b>) Surge RAO with wave; (<b>b</b>) sway RAO with wave; (<b>c</b>) heave RAO with wave; (<b>d</b>) roll RAO with wave; (<b>e</b>) pitch RAO with wave; (<b>f</b>) yaw RAO with wave.</p>
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<p>Fxd<sup>w</sup> mean second-order wave-drift forces for the fixed structure with a 0-degree wave heading.</p>
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<p>Fxd<sup>w</sup> mean second-order wave-drift forces for the free-floating body with a 0-degree wave heading.</p>
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<p>(<b>a</b>) Fxd<sup>w</sup> mean second-order wave-drift forces; (<b>b</b>) Fyd<sup>w</sup> mean second-order wave-drift forces; (<b>c</b>) Mzd<sup>w</sup> mean second-order wave-drift forces, for a 30-degree wave heading.</p>
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<p>(<b>a</b>) Fx horizontal wave and current exciting force; (<b>b</b>) Fz vertical wave and current exciting force; (<b>c</b>) My wave and current exciting moment.</p>
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<p>(<b>a</b>) Fx horizontal wave and current exciting force; (<b>b</b>) Fy horizontal wave and current exciting force; (<b>c</b>) Fz vertical wave and current exciting force; (<b>d</b>) Mx wave and current exciting moment; (<b>e</b>) My wave and current exciting moment; (<b>f</b>) Mz wave and current exciting moment.</p>
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<p>(<b>a</b>) A<sub>11</sub> added mass with wave and current; (<b>b</b>) A<sub>33</sub> added mass with wave and current; (<b>c</b>) A<sub>55</sub> added mass with wave and current.</p>
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<p>(<b>a</b>) B<sub>11</sub> hydrodynamic damping with wave and current; (<b>b</b>) B<sub>33</sub> hydrodynamic damping with wave and current; (<b>c</b>) B<sub>55</sub> hydrodynamic damping with wave and current.</p>
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<p>(<b>a</b>) Surge RAO with wave and current; (<b>b</b>) heave RAO with wave and current; (<b>c</b>) pitch RAO with wave and current.</p>
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<p>(<b>a</b>) Surge RAO with wave and current; (<b>b</b>) sway RAO with wave and current; (<b>c</b>) heave RAO with wave and current; (<b>d</b>) roll RAO with wave and current; (<b>e</b>) pitch RAO with wave and current; (<b>f</b>) yaw RAO with wave and current.</p>
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<p>(<b>a</b>) Bxx wave-drift damping; (<b>b</b>) Byx wave-drift damping; (<b>c</b>) Bzx wave-drift damping; (<b>d</b>) Bxy wave-drift damping; (<b>e</b>) Byy wave-drift damping; (<b>f</b>) Bzy wave-drift damping.</p>
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<p>Fxd<sup>wc</sup> wave and current mean second-order drift forces for 0-degree wave and current headings.</p>
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<p>(<b>a</b>) Fxd<sup>wc</sup> wave and current mean second-order drift forces; (<b>b</b>) Fyd<sup>wc</sup> wave and current mean second-order drift forces.</p>
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29 pages, 488 KiB  
Review
A Review of Current Approaches to Pain Management in Knee Osteoarthritis with a Focus on Italian Clinical Landscape
by Stefano Giaretta, Alberto Magni, Alberto Migliore, Silvia Natoli, Filomena Puntillo, Gianpaolo Ronconi, Luigi Santoiemma, Cristiano Sconza, Ombretta Viapiana and Gustavo Zanoli
J. Clin. Med. 2024, 13(17), 5176; https://doi.org/10.3390/jcm13175176 - 31 Aug 2024
Viewed by 1077
Abstract
The global cases of knee osteoarthritis (KOA) are projected to increase by 74.9% by 2050. Currently, over half of patients remain dissatisfied with their pain relief. This review addresses unmet needs for moderate-to-severe KOA pain; it offers evidence and insights for improved management. [...] Read more.
The global cases of knee osteoarthritis (KOA) are projected to increase by 74.9% by 2050. Currently, over half of patients remain dissatisfied with their pain relief. This review addresses unmet needs for moderate-to-severe KOA pain; it offers evidence and insights for improved management. Italian experts from the fields of rheumatology, physical medicine and rehabilitation, orthopedics, primary care, and pain therapy have identified several key issues. They emphasized the need for standardized care protocols to address inconsistencies in patient management across different specialties. Early diagnosis is crucial, as cartilage responds better to early protective and structural therapies. Faster access to physiatrist evaluation and reimbursement for physical, rehabilitative, and pharmacological treatments, including intra-articular (IA) therapy, could reduce access disparities. Concerns surround the adverse effects of oral pharmacological treatments, highlighting the need for safer alternatives. Patient satisfaction with corticosteroids and hyaluronic acid-based IA therapies reduces over time and there is no consensus on the optimal IA therapy protocol. Surgery should be reserved for severe symptoms and radiographic KOA evidence, as chronic pain post-surgery poses significant societal and economic burdens. The experts advocate for a multidisciplinary approach, promoting interaction and collaboration between specialists and general practitioners, to enhance KOA care and treatment consistency in Italy. Full article
(This article belongs to the Special Issue Knee Osteoarthritis: Clinical Updates and Perspectives)
17 pages, 4703 KiB  
Article
The Role of a New Stabilizer in Enhancing the Mechanical Performance of Construction Residue Soils
by Xin Chen, Jing Yu, Feng Yu, Jingjing Pan and Shuaikang Li
Materials 2024, 17(17), 4293; https://doi.org/10.3390/ma17174293 - 30 Aug 2024
Viewed by 341
Abstract
Urban construction generates significant amounts of construction residue soil. This paper introduces a novel soil stabilizer based on industrial waste to improve its utilization. This stabilizer is primarily composed of blast furnace slag (BFS), steel slag (SS), phosphogypsum (PG), and other additives, which [...] Read more.
Urban construction generates significant amounts of construction residue soil. This paper introduces a novel soil stabilizer based on industrial waste to improve its utilization. This stabilizer is primarily composed of blast furnace slag (BFS), steel slag (SS), phosphogypsum (PG), and other additives, which enhance soil strength through physical and chemical processes. This study investigated the mechanical properties of construction residue soil cured with this stabilizer, focusing on the effects of organic matter content (Oo), stabilizer dosage (Oc), and curing age (T) on unconfined compressive strength (UCS). Additionally, water stability and wet–dry cycle tests of the stabilized soil were conducted to assess long-term performance. According to the findings, the UCS increased with the higher stabilizer dosage and longer curing periods but reduced with the higher organic matter content. A stabilizer content of 15–20% is recommended for optimal stabilization efficacy and cost-efficiency in engineering applications. The samples lost their strength when immersed in water. However, adding more stabilizers to the soil can effectively enhance its water stability. Under wet–dry cycle conditions, the UCS initially increased and then decreased, remaining lower than that of samples cured under standard conditions. The findings can provide valuable data for the practical application in construction residual soil stabilization. Full article
(This article belongs to the Topic Mathematical Modeling of Complex Granular Systems)
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<p>The particle size distribution curve of the soil sample and the raw materials of the stabilizer.</p>
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<p>The compaction curve of the soil sample.</p>
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<p>The mineral phase of tested soil.</p>
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<p>The methods of this study.</p>
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<p>The relationship between the UCS of stabilized soil and the dosage of the stabilizer: (<b>a</b>) <span class="html-italic">T</span> = 7 d; (<b>b</b>) <span class="html-italic">T</span> = 14 d; (<b>c</b>) <span class="html-italic">T</span> = 21 d; (<b>d</b>) <span class="html-italic">T</span> = 28 d.</p>
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<p>The variation in strength performance of stabilized soil with different organic matter contents: (<b>a</b>) <span class="html-italic">T</span> = 7 d; (<b>b</b>) <span class="html-italic">T</span> = 14 d; (<b>c</b>) <span class="html-italic">T</span> = 21 d; (<b>d</b>) <span class="html-italic">T</span> = 28 d.</p>
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<p>The relationship between the UCS of stabilized soil and the dosage of the stabilizer: (<b>a</b>) <span class="html-italic">O</span><sub>c</sub> = 15%; (<b>b</b>) <span class="html-italic">O</span><sub>c</sub> = 20%; (<b>c</b>) <span class="html-italic">O</span><sub>c</sub> = 25%; (<b>d</b>) <span class="html-italic">O</span><sub>c</sub> = 30%.</p>
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<p>The variation of UCS of stabilized soil with immersion time: (<b>a</b>) <span class="html-italic">O</span><sub>c</sub> = 20%; (<b>b</b>) <span class="html-italic">O</span><sub>c</sub> = 30%.</p>
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<p>The strength residual coefficients of the new stabilized soil at different immersion periods.</p>
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<p>The UCS of the new stabilized soil varied with the wet–dry cycle numbers: (<b>a</b>) <span class="html-italic">O</span><sub>c</sub> = 20%; (<b>b</b>) <span class="html-italic">O</span><sub>c</sub> = 30%.</p>
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<p>The residual coefficients of stabilized soil under wet–dry cycling conditions.</p>
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<p>The cumulative mass loss rate varies with the cycle numbers.</p>
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23 pages, 41579 KiB  
Article
Suitability and Structural Optimization of Vegetation Restoration on the Loess Plateau: A MaxEnt Model-Based Study of Environmental and Anthropogenic Impacts
by Jie Luo, Yirui Chen, Ying Wu, Guoying Xie, Weitian Jia, Muhammad Fahad Sardar, Manal Abdulaziz Binobead and Xiang Li
Forests 2024, 15(9), 1528; https://doi.org/10.3390/f15091528 - 30 Aug 2024
Viewed by 418
Abstract
In recent years, the problem of ecosystem degradation caused by human activities has become increasingly serious. Vegetation restoration is a key means to solve this problem, which has increased. To address the suitability and structural optimization of vegetation restoration in the Loess Plateau [...] Read more.
In recent years, the problem of ecosystem degradation caused by human activities has become increasingly serious. Vegetation restoration is a key means to solve this problem, which has increased. To address the suitability and structural optimization of vegetation restoration in the Loess Plateau (China), the MaxEnt model was used to quantify the impacts of environmental and human activities on the planting suitability of vegetation restoration species at the raster scale. Three layers of trees, shrubs, and herbs with 12 common vegetation restoration species were selected. The factor index system was constructed by combining climatic, ecological, and socio-economic data, and the MaxEnt model predicted land suitability. It was found that human activities significantly increased the unsuitable planting area. This especially affected Robinia pseudoacacia in the tree layer and Amorpha fruticosa in the shrub layer. High and medium suitable areas were mainly sparsely populated areas with close water sources. Through maximum suitability optimization, it was identified that the overall spatial distribution of the three layers in the study area was relatively consistent, and the structural dominance of trees + shrubs + herbs and single herbs in the vertical structure was obvious; these were concentrated in the southwestern and northeastern parts of the study area, respectively. In addition, organic content (OC) and distance from the road to woodland (RW) were the dominant factors affecting land suitability, with a contribution rate of more than 50% and up to 80%. These results provide a scientific basis for optimizing planting structures. They are of significant theoretical and practical significance in guiding vegetation restoration work. Full article
(This article belongs to the Section Forest Ecology and Management)
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<p>Overview of the study area. (<b>a</b>) Geographic location of the Loess Plateau, (<b>b</b>) precipitation, (<b>c</b>) temperature, (<b>d</b>) soil type, (<b>e</b>) land use type.</p>
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<p>Research framework.</p>
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<p>Unsuitable/suitable area for 12 species in two cases.</p>
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<p>Distribution of potential planting suitability zones for the four plant species in the tree layer.</p>
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<p>Distribution of potential planting suitability zones for the four plant species in the shrub layer.</p>
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<p>Distribution of potential planting suitability zones for the four plant species in the herb layer.</p>
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<p>Distribution of optimal suitability of species in the tree layer of the Loess Plateau.</p>
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<p>Distribution of optimal suitability of species in the shrub layer of the Loess Plateau.</p>
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<p>Distribution of optimal suitability of species in the herb layer of the Loess Plateau.</p>
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<p>Vertical structure of species in vegetation restoration on the Loess Plateau.</p>
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<p>Contributions of factors influencing the distribution of four plant species in the tree layer.</p>
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<p>Contributions of factors influencing the distribution of four plant species in the shrub layer.</p>
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<p>Contributions of factors influencing the distribution of four plant species in the herb layer.</p>
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<p>Species distribution data for the tree layer.</p>
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<p>Species distribution data for the shrub layer.</p>
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<p>Species distribution data for the herb layer.</p>
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<p>Spatial distribution of factors in Loess Plateau. (<b>a</b>) Digital elevation model (DEM), (<b>b</b>) slope (Sl), (<b>c</b>) normalized difference vegetation index (NDVI), (<b>d</b>) organic content (OC), (<b>e</b>) aspect (Asp), (<b>f</b>) sunshine duration (Sun), (<b>g</b>) total nitrogen (TN), (<b>h</b>) total phosphorus (TP), (<b>i</b>) total potassium (TK), (<b>j</b>) topsoil calcium carbonate (CaCO<sub>3</sub>), (<b>k</b>) distance from road to woodland (RW), (<b>l</b>) distance from water source to woodland (WW), (<b>m</b>) pH, (<b>n</b>) available water capacity_Class (AWC), (<b>o</b>) gross domestic product (GDP), and (<b>p</b>) population density (POP).</p>
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