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Search Results (1,765)

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19 pages, 1359 KiB  
Article
Socially Acceptable Feed Formulations May Impact the Voluntary Feed Intake and Growth, but Not Robustness of Nile Tilapia (Oreochromis niloticus)
by Rodrigo Mendes, Paulo Rema, Jorge Dias, Ana Teresa Gonçalves, Rita Teodósio, Sofia Engrola, Francisco J. Sánchez-Vázquez and Luís E. C. Conceição
Fishes 2024, 9(9), 361; https://doi.org/10.3390/fishes9090361 - 16 Sep 2024
Viewed by 447
Abstract
Society is becoming more demanding with aquaculture’s environmental footprint and animal wellbeing. In order to potentially mitigate these concerns, feed formulations could be based on eco-efficient (circular economy-driven) or organic ingredients. This study aimed to investigate the growth performance, feed utilization, and health [...] Read more.
Society is becoming more demanding with aquaculture’s environmental footprint and animal wellbeing. In order to potentially mitigate these concerns, feed formulations could be based on eco-efficient (circular economy-driven) or organic ingredients. This study aimed to investigate the growth performance, feed utilization, and health status of juvenile Nile tilapia (Oreochromis niloticus) when fed with such feeds. The growth trial lasted for 8 weeks, and fish had an initial weight of 31.0 ± 0.5 g (mean ± SD). Fish were fed until visual satiation, in quadruplicate, with one of three isonitrogenous and isoenergetic experimental feeds: a commercial-like feed without fishmeal (PD), a diet based on ingredients compatible with organic certification (ORG), or a feed formulated using circular economy-driven subproducts and emergent ingredients (ECO). Fish fed ECO showed a tendency for decreased feed intake, while ORG fish significantly reduced their intake compared to those fed PD. Consequently, fish fed ECO (62.7 ± 5.4 g) exhibited almost half the growth than those fed PD (107.8 ± 6.1 g), while ORG fish almost did not increase their weight (32.7 ± 1.3 g). ECO and ORG diets had a lower digestibility for protein, lipid, and energy when compared to PD. Feed utilization of fish fed ECO or ORG was also lower than those fed PD. From the health-related genes analyzed, only glutathione reductase (gsr) showed statistically significant differences, being more expressed in fish-fed ECO than those fed PD. Thus, even when such novel formulations induced extreme effects on voluntary feed intake, their impact was noted only in fish growth, but not in robustness. Full article
(This article belongs to the Special Issue Welfare and Sustainability in Aquaculture)
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<p>Nutrient or energy retentions (% digestible intake) of protein, lipid, and energy of experimental diets (PD, ORG, and ECO) given to Nile tilapia (<span class="html-italic">Oreochromis niloticus</span>) for 55 days. Data are presented as mean ± standard deviation (<span class="html-italic">n</span> = 4). Different letters indicate significant differences (Kruskal—Wallis; <span class="html-italic">p</span>  &lt;  0.05) between dietary treatments.</p>
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<p>Relative expression (mRNA relative expression) of genes encoding for intestinal epithelial integrity (<span class="html-italic">dao</span>, <span class="html-italic">ocl</span>, and <span class="html-italic">tjp2</span>), oxidative status/stress (<span class="html-italic">cat</span>, <span class="html-italic">gpx</span>, <span class="html-italic">gsr</span>, <span class="html-italic">nrf2</span>, and <span class="html-italic">hsp70</span>), and immune condition (<span class="html-italic">tnf-α</span>, <span class="html-italic">il-1β</span>, and <span class="html-italic">tgf-β</span>) in juvenile Nile tilapia (<span class="html-italic">Oreochromis niloticus</span>) fed with three diets (PD, ORG, and ECO) over 55 days. Data are presented as mean ± standard deviation (<span class="html-italic">n</span> = 7 for CTRL and <span class="html-italic">n</span> = 8 for ORG and ECO). Different letters indicate significant differences (one-way ANOVA; <span class="html-italic">p</span> &lt; 0.05) between dietary treatments. Abbreviations: <span class="html-italic">dao:</span> D-amino oxidase; <span class="html-italic">ocl</span>: occluding; <span class="html-italic">tjp2:</span> tight junction protein 2; <span class="html-italic">cat</span>: catalase; <span class="html-italic">gpx</span>: glutathione peroxidase; <span class="html-italic">gsr:</span> glutathione reductase; <span class="html-italic">nrf2</span>: nuclear factor erythroid 2—related factor 2; <span class="html-italic">hsp70:</span> heat shock protein 70; <span class="html-italic">tnf-α</span>: tumor necrosis factor; <span class="html-italic">il-1β</span>: interleukin-1β; <span class="html-italic">tgf-β</span>: transforming growth factor β.</p>
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13 pages, 10138 KiB  
Article
A Diboronic Acid-Based Fluorescent Sensor Array for Rapid Identification of Lonicerae Japonicae Flos and Lonicerae Flos
by Ying Bian, Chenqing Xiang, Yi Xu, Rongping Zhu, Shuanglin Qin and Zhijun Zhang
Molecules 2024, 29(18), 4374; https://doi.org/10.3390/molecules29184374 - 14 Sep 2024
Viewed by 275
Abstract
Lonicerae japonicae flos (LJF) and Lonicerae flos (LF) are traditional Chinese herbs that are commonly used and widely known for their medicinal properties and edibility. Although they may have a similar appearance and vary slightly in chemical composition, their effectiveness as medicine and [...] Read more.
Lonicerae japonicae flos (LJF) and Lonicerae flos (LF) are traditional Chinese herbs that are commonly used and widely known for their medicinal properties and edibility. Although they may have a similar appearance and vary slightly in chemical composition, their effectiveness as medicine and their use in clinical settings vary significantly, making them unsuitable for substitution. In this study, a novel 2 × 3 six-channel fluorescent sensor array is proposed that uses machine learning algorithms in combination with the indicator displacement assay (IDA) method to quickly identify LJF and LF. This array comprises two coumarin-based fluorescent indicators (ES and MS) and three diboronic acid-substituted 4,4′-bipyridinium cation quenchers (Q1–Q3), forming six dynamic complexes (C1–C6). When these complexes react with the ortho-dihydroxy groups of phenolic acid compounds in LJF and LF, they release different fluorescent indicators, which in turn causes distinct fluorescence recovery. By optimizing eight machine learning algorithms, the model achieved 100% and 98.21% accuracy rates in the testing set and the cross-validation predictions, respectively, in distinguishing between LJF and LF using Linear Discriminant Analysis (LDA). The integration of machine learning with this fluorescent sensor array shows great potential in analyzing and detecting foods and pharmaceuticals that contain polyphenols. Full article
(This article belongs to the Special Issue Recent Advances in Food Analysis)
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<p>Schematic diagram of response from the fluorescent sensor array.</p>
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<p>Fluorescence quenching curves of ES (8 μM) and MS (5 μM) titrated with different concentrations of the quenchers (Q1–Q3) in PBS (pH 7.2–7.4).</p>
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<p>Identification of four phenolic acids by the designed sensor array. (<b>a</b>) The response of the 6-channel sensor array to four phenolic acids (CH = channel); the error bar represents the standard deviation of 6 replications. (<b>b</b>) LDA classical score map of fluorescence response to the 4 phenolic acids obtained by the sensor array (scores were generated by LDA with 95% confidence). (<b>c</b>) Heat map of the fluorescence response of the multichannel array sensor to the four phenolic acids. (<b>d</b>) Confusion matrix plots of 16 unknown samples of the four phenolic acids.</p>
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<p>Identification of 14 baches of LJF and LF by the designed sensor array. (<b>a</b>) The response of the 6-channel sensor array to 14 baches of LJF and LF (CH = channel). The error bar represents the standard deviation of 6 tests. (<b>b</b>) LDA classical score plot of fluorescence response for the 14 samples obtained by the sensor array. (<b>c</b>) Heat map of the fluorescence response of the multichannel array sensor to 14 baches of LJF and LF. (<b>d</b>) Accuracy of training and test of the data on fluorescence response of the array sensors for the 14 baches of LJF and LF by 9 machine learning algorithms.</p>
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<p>Identification of Jinyinhua mixtures from 3 different manufacturers. (<b>a</b>) The response of the 6-channel sensor array to Jinyinhua mixtures from 3 different manufacturers. (CH = channel); the error bar represents the standard deviation of 6 replications. (<b>b</b>) LDA classical score map of fluorescence response for the Jinyinhua mixtures from 3 different manufacturers obtained by the sensor array.</p>
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<p>The route of synthesis of Q1–Q3.</p>
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23 pages, 2974 KiB  
Article
Evaluation of Biotechnological Active Peptides Secreted by Saccharomyces cerevisiae with Potential Skin Benefits
by Elisabete Muchagato Maurício, Patrícia Branco, Ana Luiza Barros Araújo, Catarina Roma-Rodrigues, Katelene Lima, Maria Paula Duarte, Alexandra R. Fernandes and Helena Albergaria
Antibiotics 2024, 13(9), 881; https://doi.org/10.3390/antibiotics13090881 - 13 Sep 2024
Viewed by 255
Abstract
Biotechnological active peptides are gaining interest in the cosmetics industry due to their antimicrobial, anti-inflammatory, antioxidant, and anti-collagenase (ACE) effects, as well as wound healing properties, making them suitable for cosmetic formulations. The antimicrobial activity of peptides (2–10 kDa) secreted by Saccharomyces cerevisiae [...] Read more.
Biotechnological active peptides are gaining interest in the cosmetics industry due to their antimicrobial, anti-inflammatory, antioxidant, and anti-collagenase (ACE) effects, as well as wound healing properties, making them suitable for cosmetic formulations. The antimicrobial activity of peptides (2–10 kDa) secreted by Saccharomyces cerevisiae Ethanol-Red was evaluated against dermal pathogens using broth microdilution and challenge tests. ACE was assessed using a collagenase activity colorimetric assay, antioxidant activity via spectrophotometric monitoring of nitrotetrazolium blue chloride (NBT) reduction, and anti-inflammatory effects by quantifying TNF-α mRNA in lipopolysaccharides (LPS)-exposed dermal fibroblasts. Wound healing assays involved human fibroblasts, endothelial cells, and dermal keratinocytes. The peptides (2–10 kDa) exhibited antimicrobial activity against 10 dermal pathogens, with the Minimum Inhibitory Concentrations (MICs) ranging from 125 µg/mL for Staphylococcus aureus to 1000 µg/mL for Candida albicans and Streptococcus pyogenes. In the challenge test, peptides at their MICs reduced microbial counts significantly, fulfilling ISO 11930:2019 standards, except against Aspergillus brasiliensis. The peptides combined with Microcare SB showed synergy, particularly against C. albicans and A. brasilensis. In vitro, the peptides inhibited collagenase activity by 41.8% and 94.5% at 250 and 1000 µg/mL, respectively, and demonstrated antioxidant capacity. Pre-incubation with peptides decreased TNF-α expression in fibroblasts, indicating anti-inflammatory effects. The peptides do not show to promote or inhibit the angiogenesis of endothelial cells, but are able to attenuate fibrosis, scar formation, and chronic inflammation during the final phases of the wound healing process. The peptides showed antimicrobial, antioxidant, ACE, and anti-inflammatory properties, highlighting their potential as multifunctional bioactive ingredients in skincare, warranting further optimization and exploration in cosmetic applications. Full article
(This article belongs to the Special Issue Microbial Natural Products as a Source of Novel Antimicrobials)
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<p>Growth profiles of bacteria, i.e., <span class="html-italic">E. coli</span> (<b>A</b>), <span class="html-italic">P. aeruginosa</span> (<b>B</b>), <span class="html-italic">S. aureus</span> (<b>C</b>) and fungi, i.e., <span class="html-italic">A. brasiliensis</span> (<b>D</b>) and <span class="html-italic">C. albicans</span> (<b>E</b>), in body milk formulation in the presence of the peptides (2–10 kDa) at the MIC value and 0.3% (<span class="html-italic">v</span>/<span class="html-italic">v</span>) of Microcare<sup>®</sup> BNA (0.3% B), and the association of both (0.3% B+2–10 kDa). A positive control with 0.6% (<span class="html-italic">v</span>/<span class="html-italic">v</span>) of Microcare<sup>®</sup> BNA and 1% (<span class="html-italic">v</span>/<span class="html-italic">v</span>) of Microcare<sup>®</sup> SB, an ethanol control, and the formulation without any preservative (negative control) were also performed.</p>
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<p>Inhibition of in vitro collagenase activity by 1,10-phenanthroline (positive control) and by peptides (2–10 kDa) at final concentrations of 50, 250, 500, and 1000 µg/mL. Data are presented as means ± SD (error bars) from three independent measurements. Different letters (a–d) indicate significant differences (<span class="html-italic">p</span> &lt; 0.05) between the peptide concentrations tested (50–1000 µg/mL).</p>
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<p>Cytotoxicity of the peptides (2–10 kDa) in melanoma cell line MNT1 and normal dermal fibroblasts, keratinocytes, and melanocytes. Cells were exposed to increasing concentrations of the peptide for 48 h and viability was evaluated with the MTS assay. Bars represent the average ± standard deviation.</p>
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<p>Expression levels of TNF-α in normal dermal fibroblasts after incubation with peptides (2–10 kDa). TNF-α expression after 2 h incubation of fibroblasts with 250 µg/mL of the peptides (2–10 kDa), 1% (<span class="html-italic">v</span>/<span class="html-italic">v</span>) ethanol (vehicle) or medium (control), followed by further 2 h incubation with (+LPS, orange bars) or without (−LPS, blue bars). Bars represent the average and standard deviation of at least three experiments. * <span class="html-italic">p</span>-value &lt; 0.05.</p>
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<p>Capillary-like tube formation by HUVEC. Representative images of cells after 0 h, 2 h and 6 h of cells seeding on top of Matrigel in F12-K medium supplemented with 250 µg/mL peptides (2–10 kDa), or 1% (<span class="html-italic">v</span>/<span class="html-italic">v</span>) ethanol (Control). Scale bar corresponds to 200 µm.</p>
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<p>Wound healing assay. Representative images of the wound healing assay at 0 h and 24 h after incubation with 1% (<span class="html-italic">v</span>/<span class="html-italic">v</span>) ethanol (control) or 250 µg/mL of peptides (2–10 kDa) in (<b>A</b>) normal dermal fibroblasts, (<b>B</b>) HUVEC, and (<b>C</b>) keratinocytes. Scale bars correspond to 200 µm. Percentage of wound scratch closure (% remission) after 24 h incubation with 1% (<span class="html-italic">v</span>/<span class="html-italic">v</span>) ethanol (control) or 250 µg/mL of peptides (2–10 kDa) in (<b>D</b>) normal dermal fibroblasts, (<b>E</b>) HUVEC and (<b>F</b>) keratinocytes. Bars represent the mean ± SEM of at least two independent experiments. **** <span class="html-italic">p</span> value &lt; 0.0001, ns—statistically not significant.</p>
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<p>Superoxide scavenging capacity: (<b>A</b>) Plot of absorbance (Abs 560 nm) as a function of time for the different peptides concentrations; (<b>B</b>) Effect of the peptides on the inhibition of the NBT reduction by the PMS/NADH generated superoxide radical.</p>
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19 pages, 1822 KiB  
Article
Renal Cell Carcinoma Discrimination through Attenuated Total Reflection Fourier Transform Infrared Spectroscopy of Dried Human Urine and Machine Learning Techniques
by Bogdan Adrian Buhas, Lucia Ana-Maria Muntean, Guillaume Ploussard, Bogdan Ovidiu Feciche, Iulia Andras, Valentin Toma, Teodor Andrei Maghiar, Nicolae Crișan, Rareș-Ionuț Știufiuc and Constantin Mihai Lucaciu
Int. J. Mol. Sci. 2024, 25(18), 9830; https://doi.org/10.3390/ijms25189830 - 11 Sep 2024
Viewed by 365
Abstract
Renal cell carcinoma (RCC) is the sixth most common cancer in men and is often asymptomatic, leading to incidental detection in advanced disease stages that are associated with aggressive histology and poorer outcomes. Various cancer biomarkers are found in urine samples from patients [...] Read more.
Renal cell carcinoma (RCC) is the sixth most common cancer in men and is often asymptomatic, leading to incidental detection in advanced disease stages that are associated with aggressive histology and poorer outcomes. Various cancer biomarkers are found in urine samples from patients with RCC. In this study, we propose to investigate the use of Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR) on dried urine samples for distinguishing RCC. We analyzed dried urine samples from 49 patients with RCC, confirmed by histopathology, and 39 healthy donors using ATR-FTIR spectroscopy. The vibrational bands of the dried urine were identified by comparing them with spectra from dried artificial urine, individual urine components, and dried artificial urine spiked with urine components. Urea dominated all spectra, but smaller intensity peaks, corresponding to creatinine, phosphate, and uric acid, were also identified. Statistically significant differences between the FTIR spectra of the two groups were obtained only for creatinine, with lower intensities for RCC cases. The discrimination of RCC was performed through Principal Component Analysis combined with Linear Discriminant Analysis (PCA–LDA) and Support Vector Machine (SVM). Using PCA–LDA, we achieved a higher discrimination accuracy (82%) (using only six Principal Components to avoid overfitting), as compared to SVM (76%). Our results demonstrate the potential of urine ATR-FTIR combined with machine learning techniques for RCC discrimination. However, further studies, especially of other urological diseases, must validate this approach. Full article
(This article belongs to the Special Issue Machine Learning in Disease Diagnosis and Treatment)
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<p>ATR-FTIR spectrum of artificial urine (black) and the mean spectrum obtained from the urine of 39 control patients (red). The wavenumbers corresponding to the main peaks in the two sets of spectra are also indicated in cm<sup>−1</sup>.</p>
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<p>Comparison of the ATR-FTIR spectrum of artificial urine (black) with the spectra of the main organic urine components: urea (red), creatinine (blue), and uric acid (magenta). The vertical lines were traced to help identify the peaks of artificial urine with the peaks of the three components. The line and peak wavenumber colors indicate the compound for which we have the best match, and the black lines are traced for artificial urine peaks not matching the peaks of urea, creatinine, or uric acid.</p>
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<p>Matrix plot of the correlations between the ATR-FTIR absorption intensities measured for all the urine samples.</p>
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<p>The mean ATR-FTIR spectrum of urine from the RCC patients (red) and the healthy donors (CTRL) (blue) and the difference between the two mean spectra (black). Dashed areas represent the standard deviations. The difference spectrum was offset for better visualization.</p>
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<p>Loading plot for PC1 (black), PC2 (red), and PC4 (blue).</p>
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<p>Discrimination plot between the RCC and CTRL samples using a quadratic discrimination function and taking 15 PCs. For each sample, the software provides a score for the two groups CTRL and RCC. The sample is assigned to the group for which the score is highest. From a graphical point of view, the bi-dimensional space is split in two by the bisector of the first quadrant. The data points situated to the right from this bisector belong to the RCC group and the data points situated to the left from this bisector are assigned to the CTRL group. One can notice that three RCC cases (red circles) were assigned to the CTRL group (False Negative) and four CTRL samples (blue squares) were assigned to the RCC group (False Positive). The misassigned samples were marked with arrows. From 88 samples, 81 were assigned correctly, i.e., the accuracy was 92.05%.</p>
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<p>Accuracy of discrimination between the RCC and CTRL samples as a function of the number of PCs considered for the linear, quadratic, and Mahalanobis functions. The PCs were chosen in the order of their difference between the two groups (increasing the <span class="html-italic">p</span>, Pearson’s coefficient, from the Student’s <span class="html-italic">t</span>-Test, <a href="#ijms-25-09830-t003" class="html-table">Table 3</a>).</p>
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27 pages, 10360 KiB  
Article
Soil Moisture-Derived SWDI at 30 m Based on Multiple Satellite Datasets for Agricultural Drought Monitoring
by Jing Ning, Yunjun Yao, Joshua B. Fisher, Yufu Li, Xiaotong Zhang, Bo Jiang, Jia Xu, Ruiyang Yu, Lu Liu, Xueyi Zhang, Zijing Xie, Jiahui Fan and Luna Zhang
Remote Sens. 2024, 16(18), 3372; https://doi.org/10.3390/rs16183372 - 11 Sep 2024
Viewed by 503
Abstract
As a major agricultural hazard, drought frequently occurs due to a reduction in precipitation resulting in a continuously propagating soil moisture (SM) deficit. Assessment of the high spatial-resolution SM-derived drought index is crucial for monitoring agricultural drought. In this study, we generated a [...] Read more.
As a major agricultural hazard, drought frequently occurs due to a reduction in precipitation resulting in a continuously propagating soil moisture (SM) deficit. Assessment of the high spatial-resolution SM-derived drought index is crucial for monitoring agricultural drought. In this study, we generated a downscaled random forest SM dataset (RF-SM) and calculated the soil water deficit index (RF-SM-SWDI) at 30 m for agricultural drought monitoring. The results showed that the RF-SM dataset exhibited better consistency with in situ SM observations in the detection of extremes than did the SM products, including SMAP, SMOS, NCA-LDAS, and ESA CCI, for different land cover types in the U.S. and yielded a satisfactory performance, with the lowest root mean square error (RMSE, below 0.055 m3/m3) and the highest coefficient of determination (R2, above 0.8) for most observation networks, based on the number of sites. A vegetation health index (VHI), derived from a Landsat 8 optical remote sensing dataset, was also generated for comparison. The results illustrated that the RF-SM-SWDI and VHI exhibited high correlations (R ≥ 0.5) at approximately 70% of the stations. Furthermore, we mapped spatiotemporal drought monitoring indices in California. The RF-SM-SWDI provided drought conditions with more detailed spatial information than did the short-term drought blend (STDB) released by the U.S. Drought Monitor, which demonstrated the expected response of seasonal drought trends, while differences from the VHI were observed mainly in forest areas. Therefore, downscaled SM and SWDI, with a spatial resolution of 30 m, are promising for monitoring agricultural field drought within different contexts, and additional reliable factors could be incorporated to better guide agricultural management practices. Full article
(This article belongs to the Special Issue Quantitative Remote Sensing of Vegetation and Its Applications)
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<p>The spatial distribution of training and testing stations used in the downscaling framework. The map of land cover types of the substudy area and the locations of the in situ observation stations appear at the <b>top left</b> and <b>bottom</b>, respectively.</p>
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<p>Downscaling framework for the surface SM at 30 m through the integration of multiple datasets.</p>
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<p>Scatterplots of the comparison for the RF-SM data and SM derived from in situ observations at (<b>a</b>) 170 training stations and (<b>b</b>) 72 independent validation stations. The color indicates the density of the samples distributed in the area.</p>
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<p>Permutation importance of RF-SM. The features (i.e., input variables) include the SM products (SMAP, SMOS, ESA CCI, and NCA-LDAS), the soil properties (clay, sand, and silt), and the reflectance at visible and near-infrared bands (from SR_b4 to SR_b7), as well as the surface temperature (ST_b10) derived from Landsat 8.</p>
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<p>Boxplots of the in situ SM, RF-SM data, and the four SM products (SMAP, SMOS, NCA-LDAS, and KGE) for different land cover types. In the single boxplots, the red cross-dots denote outliers; the lowest and highest lines denote minimum and maximum results, respectively, except for extreme values (outliers); and the lower bound of the box, red line in the box, and upper bound of the box represent the lower quartile (25%), the median, and upper quartile (75%), respectively.</p>
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<p>Diagrams of the statistics (R<sup>2</sup>, RMSE, Bias, and KGE) for the comparison between the RF-SM dataset and the four SM products (SMAP, SMOS, NCA-LDAS, KGE) for the different observation networks.</p>
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<p>Temporal variations in precipitation (P) and surface SM derived from RF-SM and the four products at the representative stations in the substudy area during 2016.</p>
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<p>Spatial distributions of the RF-SM in the substudy area during 2016.</p>
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<p>Comparison between the RF-SM-SWDI and VHI based on the Pearson correlation coefficient (R) from 242 in situ stations in 2016.</p>
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<p>Temporal variations in SM-SWDI, RF-SM-SWDI, VHI, and precipitation (P) anomalies at the representative stations in the substudy area in 2016.</p>
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<p>Spatial distributions of the RF-SM-SWDI and VHI in the substudy area in 2016.</p>
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<p>Comparison between the RF-SM-SWDI and VHI based on the Pearson correlation coefficient (R) in the substudy area in 2016.</p>
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<p>Comparison between the RF-SM-SWDI and two VHI components: (<b>a</b>) VCI and (<b>b</b>) TCI, based on the Pearson correlation coefficient (R) in the substudy area in 2016.</p>
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<p>Spatial distributions of the RF-SM-SWDI, RF-SM-SWDI after resampling, and the short-term drought blend (STDB) in the substudy area in 2016.</p>
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18 pages, 4990 KiB  
Article
Hyperspectral Imaging and Machine Learning: A Promising Tool for the Early Detection of Tetranychus urticae Koch Infestation in Cotton
by Mariana Yamada, Leonardo Vinicius Thiesen, Fernando Henrique Iost Filho and Pedro Takao Yamamoto
Agriculture 2024, 14(9), 1573; https://doi.org/10.3390/agriculture14091573 - 10 Sep 2024
Viewed by 298
Abstract
Monitoring Tetranychus urticae Koch in cotton crops is challenging due to the vast crop areas and clustered mite attacks, hindering early infestation detection. Hyperspectral imaging offers a solution to such a challenge by capturing detailed spectral information for more accurate pest detection. This [...] Read more.
Monitoring Tetranychus urticae Koch in cotton crops is challenging due to the vast crop areas and clustered mite attacks, hindering early infestation detection. Hyperspectral imaging offers a solution to such a challenge by capturing detailed spectral information for more accurate pest detection. This study evaluated machine learning models for classifying T. urticae infestation levels in cotton using proximal hyperspectral remote sensing. Leaf reflection data were collected over 21 days, covering various infestation levels: no infestation (0 mites/leaf), low (1–10), medium (11–30), and high (>30). Data were preprocessed, and spectral bands were selected to train six machine learning models, including Random Forest (RF), Principal Component Analysis–Linear Discriminant Analysis (PCA-LDA), Feedforward Neural Network (FNN), Support Vector Machine (SVM), k-Nearest Neighbor (kNN), and Partial Least Squares (PLS). Our analysis identified 31 out of 281 wavelengths in the near-infrared (NIR) region (817–941 nm) that achieved accuracies between 80% and 100% across 21 assessment days using Random Forest and Feedforward Neural Network models to distinguish infestation levels. The PCA loadings highlighted 907.69 nm as the most significant wavelength for differentiating levels of two-spotted mite infestation. These findings are significant for developing novel monitoring methodologies for T. urticae in cotton, offering insights for early detection, potential cost savings in cotton production, and the validation of the spectral signature of T. urticae damage, thus enabling more efficient monitoring methods. Full article
(This article belongs to the Section Digital Agriculture)
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<p>Cotton leaves with different levels of <span class="html-italic">Tetranychus urticae</span> infestation.</p>
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<p>Benchtop system for hyperspectral image acquisition.</p>
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<p>Spectral signature damage caused by different levels of infestation of <span class="html-italic">Tetranychus urticae</span> in cotton plants after 3, 9, 12, and 21 days of infestation.</p>
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<p>Principal Component Analysis (PCA) using the wavelength ranges selected by the Boruta algorithm for classifying mite infestation levels.</p>
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<p>Classification accuracy (<b>a</b>) and time taken to train different models to identify <span class="html-italic">Tetranychus urticae</span> infestations in cotton (<b>b</b>). kNN = k-Nearest Neighbor, PCA-LDA = Principal Component Analysis–Linear Discriminant Analysis, FNN = Feedforward Neural Network, PLS = Partial Least Squares, RF = Random Forest, and SVM = Support Vector Machine.</p>
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<p>Performance rank of each model trained for data from each day of the infestation assessment and complete data over time. Models with the best performance were assigned the lowest rank. kNN = k-Nearest Neighbor, PCA-LDA = Principal Component Analysis–Linear Discriminant Analysis, FNN = Feedforward Neural Network, PLS = Partial Least Squares, RF = Random Forest, and SVM = Support Vector Machine.</p>
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<p>Selected wavelengths using the Boruta algorithm for all reflectance data were used to classify different <span class="html-italic">Tetranychus urticae</span> infestation levels.</p>
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<p>Comparison of the mean accuracy (±se) of the models for reflectance data from all days evaluated. Bars followed by different letters indicate differences between mean accuracies using the Tukey test (<span class="html-italic">p</span> &lt; 0.05). kNN = k-Nearest Neighbor, PCA-LDA = Principal Component Analysis–Linear Discriminant Analysis, FNN = Feedforward Neural Network, PLS = Partial Least Squares, RF = Random Forest, and SVM = Support Vector Machine.</p>
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30 pages, 17683 KiB  
Article
Sensory Perception Systems and Machine Learning Methods for Pesticide Detection in Fruits
by Cristhian Manuel Durán Acevedo, Dayan Diomedes Cárdenas Niño and Jeniffer Katerine Carrillo Gómez
Appl. Sci. 2024, 14(17), 8074; https://doi.org/10.3390/app14178074 - 9 Sep 2024
Viewed by 423
Abstract
In this study, an electronic tongue (E-tongue) and electronic nose (E-nose) systems were applied to detect pesticide residues, specifically Preza, Daconil, Curzate, Bricol, Accros, Amistar, and Funlate, in fruits such as cape gooseberries, apples, plums, and strawberries. These advanced systems present several advantages [...] Read more.
In this study, an electronic tongue (E-tongue) and electronic nose (E-nose) systems were applied to detect pesticide residues, specifically Preza, Daconil, Curzate, Bricol, Accros, Amistar, and Funlate, in fruits such as cape gooseberries, apples, plums, and strawberries. These advanced systems present several advantages over conventional methods (e.g., GC-MS and others), including faster analysis, lower costs, ease of use, and portability. Additionally, they enable non-destructive testing and real-time monitoring, making them ideal for routine screenings and on-site analyses where effective detection is crucial. The collected data underwent rigorous analysis through multivariate techniques, specifically principal component analysis (PCA) and linear discriminant analysis (LDA). The application of machine learning (ML) algorithms resulted in a good outcome, achieving high accuracies in identifying fruits contaminated with pesticides and accurately determining the concentrations of those pesticides. This level of precision underscores the robustness and reliability of the methodologies employed, highlighting their potential as alternative tools for pesticide residue detection in agricultural products. Full article
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<p>The overall scheme of the methodology.</p>
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<p>Operation diagram of E-nose: (<b>A</b>) cleaning phase, (<b>B</b>) measurement phase.</p>
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<p>PCA plots of organic and contaminated fruit using E-nose: (<b>A</b>) plum, (<b>B</b>) strawberry, (<b>C</b>) apple, and (<b>D</b>) gooseberry.</p>
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<p>LDA plots of organic and contaminated fruit using E-nose: (<b>A</b>) plum, (<b>B</b>) strawberry, (<b>C</b>) apple, and (<b>D</b>) gooseberry.</p>
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<p>PCA plots of organic fruit vs. contaminated fruit analyzed using E-tongue: (<b>A</b>) plum, (<b>B</b>) strawberry, (<b>C</b>) apple, and (<b>D</b>) gooseberry.</p>
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<p>LDA plots of organic and contaminated fruit were analyzed using E-tongue: (<b>A</b>) plum, (<b>B</b>) strawberry, (<b>C</b>) apple, and (<b>D</b>) gooseberry.</p>
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<p>Discrimination and classification plots of pesticide concentrations and plum using E-nose: (<b>A</b>) PCA of Amistar, (<b>B</b>) PCA of Funlate, (<b>C</b>) LDA of Amistar, and (<b>D</b>) LDA of Funlate.</p>
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<p>Discrimination and classification plots of pesticide concentrations and plum using E-tongue: (<b>A</b>) PCA of Amistar, (<b>B</b>) PCA of Funlate, (<b>C</b>) LDA of Amistar, and (<b>D</b>) LDA of Funlate.</p>
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<p>Discrimination and classification plots of pesticide concentrations and strawberry using E-nose: (<b>A</b>) PCA of Across, (<b>B</b>) PCA of Bricol, (<b>C</b>) LDA of Across, and (<b>D</b>) LDA of Bricol.</p>
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<p>Discrimination and classification plots of pesticide concentrations and strawberry using E-tongue: (<b>A</b>) PCA of Across, (<b>B</b>) PCA of Bricol, (<b>C</b>) LDA of Across, and (<b>D</b>) LDA of Bricol.</p>
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<p>Discrimination and classification plots of pesticide concentrations and apple using E-nose: (<b>A</b>) PCA of Amistar, (<b>B</b>) PCA of Funlate, (<b>C</b>) LDA of Amistar, and (<b>D</b>) LDA of Funlate.</p>
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<p>Discrimination and classification plots of pesticide concentrations and apple using E-tongue: (<b>A</b>) PCA of Amistar, (<b>B</b>) PCA of Funlate, (<b>C</b>) LDA of Amistar, and (<b>D</b>) LDA of Funlate.</p>
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<p>PCA plots of pesticide concentrations and cape gooseberry using E-nose: (<b>A</b>) Bricol, (<b>B</b>) Curzate, (<b>C</b>) Daconil, and (<b>D</b>) Preza.</p>
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<p>PCA plots of pesticide concentrations and cape gooseberry using E-tongue: (<b>A</b>) Bricol, (<b>B</b>) Curzate, (<b>C</b>) Daconil, and (<b>D</b>) Preza.</p>
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<p>LDA plots of pesticide concentrations and cape gooseberry using E-nose: (<b>A</b>) Bricol, (<b>B</b>) Curzate, (<b>C</b>) Daconil, and (<b>D</b>) Preza.</p>
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<p>LDA plots of pesticide concentrations and cape gooseberry using E-tongue: (<b>A</b>) Bricol, (<b>B</b>) Curzate, (<b>C</b>) Daconil, and (<b>D</b>) Preza.</p>
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<p>Validation of data obtained with E-nose (<b>A</b>,<b>B</b>) and E-tongue (<b>C</b>,<b>D</b>) in plum.</p>
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<p>Validation of data obtained with E-nose (<b>A</b>,<b>B</b>) and E-tongue (<b>C</b>,<b>D</b>) in strawberry.</p>
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<p>Validation of data obtained with E-nose (<b>A</b>,<b>B</b>) and E-tongue (<b>C</b>,<b>D</b>) in apple.</p>
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<p>Validation of data obtained with E-nose (<b>A</b>,<b>B</b>) and E-tongue (<b>C</b>,<b>D</b>) in cape gooseberry.</p>
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25 pages, 1972 KiB  
Article
FL-DSFA: Securing RPL-Based IoT Networks against Selective Forwarding Attacks Using Federated Learning
by Rabia Khan, Noshina Tariq, Muhammad Ashraf, Farrukh Aslam Khan, Saira Shafi and Aftab Ali
Sensors 2024, 24(17), 5834; https://doi.org/10.3390/s24175834 - 8 Sep 2024
Viewed by 673
Abstract
The Internet of Things (IoT) is a significant technological advancement that allows for seamless device integration and data flow. The development of the IoT has led to the emergence of several solutions in various sectors. However, rapid popularization also has its challenges, and [...] Read more.
The Internet of Things (IoT) is a significant technological advancement that allows for seamless device integration and data flow. The development of the IoT has led to the emergence of several solutions in various sectors. However, rapid popularization also has its challenges, and one of the most serious challenges is the security of the IoT. Security is a major concern, particularly routing attacks in the core network, which may cause severe damage due to information loss. Routing Protocol for Low-Power and Lossy Networks (RPL), a routing protocol used for IoT devices, is faced with selective forwarding attacks. In this paper, we present a federated learning-based detection technique for detecting selective forwarding attacks, termed FL-DSFA. A lightweight model involving the IoT Routing Attack Dataset (IRAD), which comprises Hello Flood (HF), Decreased Rank (DR), and Version Number (VN), is used in this technique to increase the detection efficiency. The attacks on IoT threaten the security of the IoT system since they mainly focus on essential elements of RPL. The components include control messages, routing topologies, repair procedures, and resources within sensor networks. Binary classification approaches have been used to assess the training efficiency of the proposed model. The training step includes the implementation of machine learning algorithms, including logistic regression (LR), K-nearest neighbors (KNN), support vector machine (SVM), and naive Bayes (NB). The comparative analysis illustrates that this study, with SVM and KNN classifiers, exhibits the highest accuracy during training and achieves the most efficient runtime performance. The proposed system demonstrates exceptional performance, achieving a prediction precision of 97.50%, an accuracy of 95%, a recall rate of 98.33%, and an F1 score of 97.01%. It outperforms the current leading research in this field, with its classification results, scalability, and enhanced privacy. Full article
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<p>IoT network.</p>
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<p>Research framework.</p>
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<p>Feature importance from Linear Discriminant Analysis (LDA).</p>
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<p>KNN training model.</p>
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<p>KNN confusion matrix.</p>
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<p>LR training model.</p>
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<p>LR Confusion Matrix.</p>
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<p>SVM Training Model.</p>
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<p>SVM Confusion Matrix.</p>
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<p>NB training model.</p>
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<p>NB confusion matrix.</p>
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<p>Global models’ performance on test data.</p>
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<p>Global models’ performance on validation data.</p>
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15 pages, 999 KiB  
Article
Phasor-Based Myoelectric Synergy Features: A Fast Hand-Crafted Feature Extraction Scheme for Boosting Performance in Gait Phase Recognition
by Andrea Tigrini, Rami Mobarak, Alessandro Mengarelli, Rami N. Khushaba, Ali H. Al-Timemy, Federica Verdini, Ennio Gambi, Sandro Fioretti and Laura Burattini
Sensors 2024, 24(17), 5828; https://doi.org/10.3390/s24175828 - 8 Sep 2024
Viewed by 473
Abstract
Gait phase recognition systems based on surface electromyographic signals (EMGs) are crucial for developing advanced myoelectric control schemes that enhance the interaction between humans and lower limb assistive devices. However, machine learning models used in this context, such as Linear Discriminant Analysis (LDA) [...] Read more.
Gait phase recognition systems based on surface electromyographic signals (EMGs) are crucial for developing advanced myoelectric control schemes that enhance the interaction between humans and lower limb assistive devices. However, machine learning models used in this context, such as Linear Discriminant Analysis (LDA) and Support Vector Machine (SVM), typically experience performance degradation when modeling the gait cycle with more than just stance and swing phases. This study introduces a generalized phasor-based feature extraction approach (PHASOR) that captures spatial myoelectric features to improve the performance of LDA and SVM in gait phase recognition. A publicly available dataset of 40 subjects was used to evaluate PHASOR against state-of-the-art feature sets in a five-phase gait recognition problem. Additionally, fully data-driven deep learning architectures, such as Rocket and Mini-Rocket, were included for comparison. The separability index (SI) and mean semi-principal axis (MSA) analyses showed mean SI and MSA metrics of 7.7 and 0.5, respectively, indicating the proposed approach’s ability to effectively decode gait phases through EMG activity. The SVM classifier demonstrated the highest accuracy of 82% using a five-fold leave-one-trial-out testing approach, outperforming Rocket and Mini-Rocket. This study confirms that in gait phase recognition based on EMG signals, novel and efficient muscle synergy information feature extraction schemes, such as PHASOR, can compete with deep learning approaches that require greater processing time for feature extraction and classification. Full article
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<p>Mean SI obtained in testing for the 40 subjects analyzed. PHASOR feature set obtained the best performance when used with SVM among all the feature sets and models employed.</p>
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<p>Mean MSI obtained in testing for the 40 subjects analyzed. PHASOR feature set obtained the best performance when used with RBF-SVM among all the feature sets and models employed.</p>
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<p>Mean accuracy (ACC) obtained in testing for the 40 subjects analyzed. PHASOR feature set obtained the best performance when used with SVM among all the feature sets and models employed.</p>
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<p>Mean processing time in ms for computing the feature sets in testing and performing the classification output. PHASORS, RMS-PHASORS and WL-PHASORS provided processing times comparable with other hand-crafted feature sets as HTD and Du, and showed better computational performance with respect to TDPSD and TDAR sets, for both LDA and SVM classifiers. Rocket and Mini-Rocket showed a consistently higher computational demand with respect to the hand-crafted features.</p>
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<p>Confusion matrices for Rocket, Mini-Rocket, and PHASOR averaged among subjects. PHASOR exhibits a dominant principal diagonal with low misclassification rates outside the principal diagonal. In contrast, Rocket shows the worst performance, while Mini-Rocket performs well but not as well as PHASOR. Overall, the confusion matrices confirm the analysis performed using SI and MSA metrics.</p>
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8 pages, 2951 KiB  
Article
Phenotypic Identification of Landraces of Phaseolus lunatus L. from the Northeastern Region of Brazil Using Morpho-Colorimetric Analysis of Seeds
by Emerson Serafim Barros, Marco Sarigu, Andrea Lallai, Josefa Patrícia Balduino Nicolau, Clarisse Pereira Benedito, Gianluigi Bacchetta and Salvador Barros Torres
Horticulturae 2024, 10(9), 948; https://doi.org/10.3390/horticulturae10090948 - 5 Sep 2024
Viewed by 483
Abstract
Phaseolus lunatus L. is a species of landrace bean widely cultivated in Northeast Brazil. The integration of new technologies in the agricultural sector has highlighted the significance of seed images analysis as a valuable asset in the characterization process. The objective was to [...] Read more.
Phaseolus lunatus L. is a species of landrace bean widely cultivated in Northeast Brazil. The integration of new technologies in the agricultural sector has highlighted the significance of seed images analysis as a valuable asset in the characterization process. The objective was to assess the morphology of 18 P. lunatus varieties gathered from four states in the Brazilian Northeast. To achieve this, 100 seeds from each variety were utilized, and their images were acquired using a flatbed scanner with a digital resolution of 400 dpi. Subsequently, the images were processed using the ImageJ software package for analyzing seed size, shape and color characteristics. Statistical analyses were performed with SPSS software applying stepwise Linear Discriminant Analysis (LDA). The overall accuracy rate for correct identification was 80.5%. Among the varieties, the lowest classification percentage was attributed to the ‘Coquinho Vermelha’ variety (39%), while the highest rates were observed for ‘Fava Roxa’ and ‘Fava de Moita’ (98%). The morpho-colorimetric classification system successfully discriminated the varieties of P. lunatus produced in the northeastern region of Brazil, highlighting the -+*/high degree of diversity within them. In particular, seeds with uniform coloring or clearly defined secondary color patterns were easier to classify. The varieties showed low correlation, forming distinct groups based on background color, secondary color, or seed size. Full article
(This article belongs to the Section Propagation and Seeds)
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<p>Varieties of <span class="html-italic">P. lunatus</span> L. collected in Northeast Brazil.</p>
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<p>(<b>A</b>) Histogram of the standardized residuals, (<b>B</b>) normal probability plot (P-P) tested with the Kolmogorov–Smirnov test (K–S), and (<b>C</b>) dispersion plot of the standardized residuals tested with Levene’s test (F).</p>
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<p>Graphical representation of the discriminant analysis of the <span class="html-italic">P. lunatus</span> L. varieties.</p>
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<p>Dendrogram of distribution of the studied <span class="html-italic">P. lanatus</span> L. varieties.</p>
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15 pages, 1426 KiB  
Article
Chaves Thermal Spring Water Impact on Skin Health: Potential Cosmetic Application
by Inês Pinto-Ribeiro, Cláudia Castro, Pedro Emanuel Rocha, Maria João Carvalho, Ana Pintado, Adélia Mendes, Sílvia Santos Pedrosa, Paula Capeto, João Azevedo-Silva, Ana L. S. Oliveira, Manuela Pintado and Ana Raquel Madureira
Appl. Sci. 2024, 14(17), 7911; https://doi.org/10.3390/app14177911 - 5 Sep 2024
Viewed by 456
Abstract
Since ancient times, thermal spring water has been proven to be beneficial to the skin and to improving dermatologic disorders, explaining its incorporation into cosmetic formulations as an active ingredient. Chaves thermal spring water, from northern Portugal, has been used as a local [...] Read more.
Since ancient times, thermal spring water has been proven to be beneficial to the skin and to improving dermatologic disorders, explaining its incorporation into cosmetic formulations as an active ingredient. Chaves thermal spring water, from northern Portugal, has been used as a local spa since Roman times, and its customers are satisfied with its medicinal quality. Despite the lack of published evidence on its specific effects on the skin, this study evaluates the potential of using Chaves thermal water as a cosmetic ingredient. The physiochemical composition demonstrated that Chaves thermal spring water is low-mineralized water, and its major components are sodium, potassium, silicon, and calcium. In vitro experiments demonstrated that this low mineralization might explain the absence of antioxidant and antiaging potential, and the maintenance of collagen and fibronectin levels. The quantification of the IL-6 levels showed that Chaves thermal spring water could be used as an anti-inflammatory product, suggesting its use by individuals with skin diseases. In agreement with this result, in vivo experiments revealed that Chaves thermal spring water improved the integrity of the skin barrier and preserved the skin microbial community. Overall, the present work suggests that Chaves thermal spring water might be used as a cosmetic product. Full article
(This article belongs to the Special Issue Cosmetics Ingredients Research)
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<p>Effect of Chaves thermal spring water on cellular viability in (<b>a</b>) human dermal fibroblasts (nHDFs) and (<b>b</b>) keratinocytes (HaCaT) after 24 h incubation. nHDF and HaCaT cells were incubated with DMEM powder high-glucose medium plus Chaves thermal spring water (TW) and with DMEM powder high-glucose plus Mili-Q-type water (control). The pH values of both media were adjusted to 7.4, and the media were supplemented with FBS plus penicillin–streptomycin. Results are presented as percentage of cell viability, where 100% corresponds to untreated cells. The dotted line represents a 30% inhibition of cell viability. Statistical analysis was performed using the one-way ANOVA with Tukey’s multiple comparison test.</p>
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<p>Quantification of (<b>a</b>) pro-collagen 1 α1 and (<b>b</b>) fibronectin in nHDF cells treated with Chaves thermal spring water (Chaves TW). The control condition of both assays corresponds to standard culture medium prepared with Mili-Q water. Palmitoyl Tripeptide-1 (Pal-GHK) was used as a positive control. Statistical analysis was performed using the one-way ANOVA with Tukey’s multiple comparison test (** <span class="html-italic">p</span> &lt; 0.001, *** <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>Evaluation of anti-inflammatory potential of Chaves thermal water. The IL-6 levels were quantified in supernatants of HaCaT cells (<b>a</b>) without urban air pollution particles and (<b>b</b>) upon contact with urban air pollution particles. HaCaT cells were incubated with DMEM powder high-glucose medium plus Chaves thermal spring water (TW) and with DMEM powder high-glucose plus Mili-Q-type water (control). The pH values of both media were adjusted to 7.4, and the media were supplemented with FBS plus penicillin–streptomycin. Betamethasone (Beta) was used as a positive control for the anti-inflammatory effect. (** <span class="html-italic">p</span> &lt; 0.001, **** <span class="html-italic">p</span> &lt; 0.0001).</p>
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<p>Skin biometric parameters. The measurement of (<b>a</b>) hydration levels, (<b>b</b>) transepidermal water loss (TEWL), and (<b>c</b>) pH values was performed on days 0 (before the application) and on days 8 and 16 (after the application). The results are represented as bar graphs (average ± SD). * and ** stand for <span class="html-italic">p</span> &lt; 0.05 and <span class="html-italic">p</span> &lt; 0.005, respectively. ns, not significant (<span class="html-italic">p</span> &gt; 0.05).</p>
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<p>The relative abundances of (<b>a</b>) <span class="html-italic">Staphylococcus</span> sp.; (<b>b</b>) <span class="html-italic">Corynebacterium</span> sp.; (<b>c</b>) <span class="html-italic">Propionibacterium</span> sp.; (<b>d</b>) <span class="html-italic">Malassezia</span> sp.; (<b>e</b>) <span class="html-italic">Staphylococcus epidermidis</span>; (<b>f</b>) <span class="html-italic">Propionibacterium acnes</span>, determined by qPCR (ns, not significant).</p>
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22 pages, 11240 KiB  
Article
Research on Landscape Perception of Urban Parks Based on User-Generated Data
by Wei Ren, Kaiyuan Zhan, Zhu Chen and Xin-Chen Hong
Buildings 2024, 14(9), 2776; https://doi.org/10.3390/buildings14092776 - 4 Sep 2024
Viewed by 435
Abstract
User-generated data can reflect various viewpoints and experiences derived from people’s perception outcomes. The perceptual results can be obtained, often by combining subjective public perceptions of the landscape with physiological monitoring data. Accessing people’s perceptions of the landscape through text is a common [...] Read more.
User-generated data can reflect various viewpoints and experiences derived from people’s perception outcomes. The perceptual results can be obtained, often by combining subjective public perceptions of the landscape with physiological monitoring data. Accessing people’s perceptions of the landscape through text is a common method. It is hard to fully render nuances, emotions, and complexities depending only on text by superficial emotional tendencies alone. Numerical representations may lead to misleading conclusions and undermine public participation. In addition, the use of physiological test data does not reflect the subjective reasons for the comments made. Therefore, it is essential to deeply parse the text and distinguish between segments with different semantic differences. In this study, we propose a perceptual psychology-based workflow to extract and visualize multifaceted views from user-generated data. The analysis methods of FCN, LDA, and LSTM were incorporated into the workflow. Six areas in Fuzhou City, China, with 12 city parks, were selected as the study object. Firstly, 9987 review data and 1747 pictures with corresponding visitor trajectories were crawled separately on the Dianping and Liangbulu websites. For in-depth analysis of comment texts and making relevant heat maps. Secondly, the process of clauses was added to get a more accurate representation of the sentiment of things based on the LSTM sentiment analysis model. Thirdly, various factors affecting the perception of landscapes were explored. Based on such, the overall people’s perception of urban parks in Fuzhou was finally obtained. The study results show that (1) the texts in terms of ‘wind’, ‘temperature’, ‘structures’, ‘edge space (spatial boundaries)’, and ‘passed space’ are the five most representative factors of the urban parks in Fuzhou; (2) the textual analyses further confirmed the influence of spatial factors on perception in the temporal dimension; and (3) environmental factors influence people’s sense of urban parks concerning specificity, clocking behavior, and comfort feelings. These research results provide indispensable references for optimizing and transforming urban environments using user-generated data. Full article
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<p>Research steps.</p>
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<p>Study area map. (<b>a</b>) Distribution map of the six study areas; (<b>b</b>) Geographic location of the study areas on the map of China. The red square frame indicates the location of the study areas in Fujian Province in the picture.</p>
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<p>Trends of LDA theme over the years.</p>
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<p>Tree map of subject term categories (top 200 frequency).</p>
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<p>Percentage of image semantic segmentation elements.</p>
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<p>LSTM emotional tendency scatter plot.</p>
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<p>(<b>a</b>) Density map of photo location points in the Forest Park area; (<b>b</b>) density map of visitor track in the Forest Park area; (<b>c</b>) emotional distribution map in the Forest Park area; (<b>d</b>) density map of photo location points in the Fuway area; (<b>e</b>) density map of visitor track in the Fuway area; (<b>f</b>) emotional distribution map in the Fuway area. The picture is an excerpt, and other pictures are detailed in <a href="#buildings-14-02776-f0A1" class="html-fig">Figure A1</a> of the <a href="#app1-buildings-14-02776" class="html-app">Appendix A</a>.</p>
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<p>Words cloud maps. (<b>a</b>) Theme of wind; (<b>b</b>) theme of road; (<b>c</b>) theme of wall; (<b>d</b>) theme of gate; (<b>e</b>) theme of ground; (<b>f</b>) theme of sky; (<b>g</b>) theme of tree; (<b>h</b>) theme of child.</p>
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<p>Scatterplot of emotional tendencies of comments on the theme of ‘child’.</p>
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<p>(<b>a</b>) Density map of photo location points in the West Lake Park area; (<b>b</b>) density map of visitor track in the West Lake Park area; (<b>c</b>) dmotional distribution map in the West Lake Park area; (<b>d</b>) density map of photo location points in the Yantai Hill Park area; (<b>e</b>) density map of visitor track in the Yantai Hill Park area; (<b>f</b>) emotional distribution map in the Yantai Hill Park; (<b>g</b>) density map of photo location points in the Huahai Park area; (<b>h</b>) density map of visitor track in the Huahai Park area; (<b>i</b>) emotional distribution map in the Huahai Park area; (<b>j</b>) density map of photo location points in the Jinji Mountain Park area; (<b>k</b>) density map of visitor track in the Jinji Mountain Park area; (<b>l</b>) emotional distribution map in the Jinji Mountain Park.</p>
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<p>(<b>a</b>) Density map of photo location points in the West Lake Park area; (<b>b</b>) density map of visitor track in the West Lake Park area; (<b>c</b>) dmotional distribution map in the West Lake Park area; (<b>d</b>) density map of photo location points in the Yantai Hill Park area; (<b>e</b>) density map of visitor track in the Yantai Hill Park area; (<b>f</b>) emotional distribution map in the Yantai Hill Park; (<b>g</b>) density map of photo location points in the Huahai Park area; (<b>h</b>) density map of visitor track in the Huahai Park area; (<b>i</b>) emotional distribution map in the Huahai Park area; (<b>j</b>) density map of photo location points in the Jinji Mountain Park area; (<b>k</b>) density map of visitor track in the Jinji Mountain Park area; (<b>l</b>) emotional distribution map in the Jinji Mountain Park.</p>
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14 pages, 3831 KiB  
Article
Detection of Antimicrobial Proteins/Peptides and Bacterial Proteins Involved in Antimicrobial Resistance in Raw Cow’s Milk from Different Breeds
by Cristian Piras, Rosario De Fazio, Antonella Di Francesco, Francesca Oppedisano, Anna Antonella Spina, Vincenzo Cunsolo, Paola Roncada, Rainer Cramer and Domenico Britti
Antibiotics 2024, 13(9), 838; https://doi.org/10.3390/antibiotics13090838 - 3 Sep 2024
Viewed by 579
Abstract
Proteins involved in antibiotic resistance (resistome) and with antimicrobial activity are present in biological specimens. This study aims to explore the presence and abundance of antimicrobial peptides (AMPs) and resistome proteins in bovine milk from diverse breeds and from intensive (Pezzata rossa, Bruna [...] Read more.
Proteins involved in antibiotic resistance (resistome) and with antimicrobial activity are present in biological specimens. This study aims to explore the presence and abundance of antimicrobial peptides (AMPs) and resistome proteins in bovine milk from diverse breeds and from intensive (Pezzata rossa, Bruna alpina, and Frisona) and non-intensive farming (Podolica breeds). Liquid atmospheric pressure matrix-assisted laser desorption/ionization (LAP-MALDI) mass spectrometry (MS) profiling, bottom-up proteomics, and metaproteomics were used to comprehensively analyze milk samples from various bovine breeds in order to identify and characterize AMPs and to investigate resistome proteins. LAP-MALDI MS coupled with linear discriminant analysis (LDA) machine learning was employed as a rapid classification method for Podolica milk recognition against the milk of other bovine species. The results of the LAP-MALDI MS analysis of milk coupled with the linear discriminant analysis (LDA) demonstrate the potential of distinguishing between Podolica and control milk samples based on MS profiles. The classification accuracy achieved in the training set is 86% while it reaches 98.4% in the test set. Bottom-up proteomics revealed approximately 220 quantified bovine proteins (identified using the Bos taurus database), with cathelicidins and annexins exhibiting higher abundance levels in control cows (intensive farming breeds). On the other hand, the metaproteomics analysis highlighted the diversity within the milk’s microbial ecosystem with interesting results that may reflect the diverse environmental variables. The bottom-up proteomics data analysis using the Comprehensive Antibiotic Resistance Database (CARD) revealed beta-lactamases and tetracycline resistance proteins in both control and Podolica milk samples, with no relevant breed-specific differences observed. Full article
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<p>Linear discriminant analysis plot representing the LAP-MALDI MS classification of the Podolica (blue) versus control (red) milk samples. The control milk samples were obtained from three different breeds (Pezzata rossa, Bruna alpina, and Frisona).</p>
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<p>Normalized LAP-MALDI MS bin intensities (as fraction of the summed intensities of all bins) for the 1418–1419 (<b>a</b>) and 1576–1577 (<b>b</b>) mass bin. The ions of these mass bins are relevant for the breed classification, and the difference in their intensity between control and Podolica milk samples is statistically significant (<span class="html-italic">p</span> &lt; 0.0001, Wilcoxon test) for both mass bins.</p>
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<p>Differential representation of the summed eXtracted Ion Current (XIC) of all isotopic clusters associated with the identified amino acid sequence obtained through LFQ bottom-up proteomic analysis of cathelicidins (<b>a</b>) and annexins (<b>b</b>).</p>
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<p>Pie charts detailing the taxonomical classification of the peptides obtained with the MaxQuant searches against the bacteria database. The obtained lists were analyzed with UNIPEPT (see the <a href="#sec4-antibiotics-13-00838" class="html-sec">Section 4</a>) for the creation of the pie charts. Panels (<b>a</b>,<b>c</b>) represent the control samples. Panels (<b>b</b>,<b>d</b>) represent the Podolica samples. The vectorial file of this image is uploaded as <a href="#app1-antibiotics-13-00838" class="html-app">Supplementary Material (Supplementary Figure S1)</a> and as separated files.</p>
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<p>Pie charts detailing the taxonomical classification of the peptides obtained with the MaxQuant searches against the bacteria database. The obtained lists were analyzed with UNIPEPT (see the <a href="#sec4-antibiotics-13-00838" class="html-sec">Section 4</a>) for the creation of the pie charts. Panels (<b>a</b>,<b>c</b>) represent the control samples. Panels (<b>b</b>,<b>d</b>) represent the Podolica samples. The vectorial file of this image is uploaded as <a href="#app1-antibiotics-13-00838" class="html-app">Supplementary Material (Supplementary Figure S1)</a> and as separated files.</p>
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20 pages, 17195 KiB  
Article
Optimization of Black Nickel Coatings’ Electrodeposit onto Steel
by Gabriel Santos, Zohra Benzarti, Diogo Cavaleiro, Luís Figueiredo, Sandra Carvalho and Susana Devesa
Coatings 2024, 14(9), 1125; https://doi.org/10.3390/coatings14091125 - 2 Sep 2024
Viewed by 413
Abstract
Coatings can be created using various technologies and serve different roles, including protection, functionality, and decorative purposes. Among these technologies, electrodeposition has emerged as a low-cost, versatile, and straightforward process with remarkable scalability and manufacturability. Nickel, extensively studied in the context of electrodeposition, [...] Read more.
Coatings can be created using various technologies and serve different roles, including protection, functionality, and decorative purposes. Among these technologies, electrodeposition has emerged as a low-cost, versatile, and straightforward process with remarkable scalability and manufacturability. Nickel, extensively studied in the context of electrodeposition, has many applications ranging from decorative to functional. The main objective of the present work is the electrodeposition of double-layer nickel coatings, consisting of a bright nickel pre-coating followed by a black nickel layer with enhanced properties, onto steel substrates. The influence of deposition parameters on colour, morphology, adhesion, roughness, and coefficient of friction was studied. The effects of cetyltrimethylammonium bromide (CTAB) and WS2 nanoparticles on the coatings’ properties and performance were also investigated. Additionally, the influence of the steel substrate’s pre-treatment, consisting of immersion in an HCl solution, prior to the electrodeposition, to etch the surface and activate it, was evaluated and optimized. The characterization of the pre-coating revealed a homogeneous surface with a medium superficial feature of 2.56 μm. Energy dispersive X-ray spectroscopy (EDS) results showed a high content of Ni, and X-ray diffraction (XRD) confirmed its crystallinity. In contrast, the black films’ characterization revealed their amorphous nature. The BN10 sample, which corresponds to a black nickel layer with a deposition time of 10 min, showed the best results for colour and roughness, presenting the lowest brightness (L*) value (closest to absolute black) and the most homogeneous roughness. EDS analysis confirmed the incorporation of WS2, but all samples with CTAB exhibited signs of corrosion and cracks, along with higher coefficient of friction (COF) values. Full article
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<p>Schematic of the most relevant achievements for nickel electrodeposition.</p>
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<p>(<b>a</b>) XRD diffractogram of the substrate and (<b>b</b>) stick pattern for iron (ICDD 04-007-9753).</p>
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<p>Surface SEM micrographs of the substrate, with a magnification of (<b>a</b>) 500× and (<b>b</b>) 2000×.</p>
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<p>Surface SEM micrographs of the substrate after 20 min of HCl bath, with a magnification of (<b>a</b>) 500× and (<b>b</b>) 2000×.</p>
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<p>Surface optical image of the pre-coating deposited in a substrate subject to an HCl activation for (<b>a</b>) 20 min and (<b>b</b>) 5 min.</p>
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<p>Cross-section SEM image of the nickel pre-coating, with a magnification of (<b>a</b>) 1.25 kx and (<b>b</b>) 4.00 kx.</p>
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<p>(<b>a</b>) XRD diffractogram of the pre-coating and (<b>b</b>) stick pattern for nickel (ICDD 04-010-6148).</p>
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<p>Surface SEM micrographs of the pre-coating, with a magnification of (<b>a</b>) 500×, (<b>b</b>) 2000× and (<b>c</b>) 5000×.</p>
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<p>Superficial feature size distribution histogram determined from the SEM images.</p>
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<p>Cross-section SEM images of the studied samples: (<b>a</b>) BN5, (<b>b</b>) BN10, (<b>c</b>) BN15A and (<b>d</b>) BN15B.</p>
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<p>XRD diffractograms of the coatings and the reference of the pre-coating (PC).</p>
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<p>Surface SEM micrographs of the coatings, BN5 with a magnification of (<b>a</b>) 500× and (<b>b</b>) 5000×, and BN10 with a magnification of (<b>c</b>) 500× and (<b>d</b>) 5000×.</p>
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<p>Surface SEM micrographs of the coatings, BN15A with a magnification of (<b>a</b>) 500× and (<b>b</b>) 5000×, and BN15B with a magnification of (<b>c</b>) 500× and (<b>d</b>) 5000×.</p>
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<p>SEM image of BN15A surface at (<b>a</b>) 1474×; EDS spectra of sample BN15A, with WS<sub>2</sub> nanoparticles: (<b>b</b>) superficial protrusion, (<b>c</b>) compromised surface area and (<b>d</b>) area without defects.</p>
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<p>The 2D and 3D AFM images (10 µm × 10 µm) of the coatings: (<b>a</b>) BN5 and (<b>b</b>) BN10.</p>
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<p>CIE L*a*b* colour diagram of the pre-coating (PC) and black coatings.</p>
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<p>Surface SEM micrographs of wear tracks on coating (<b>a</b>) BN5 and (<b>b</b>) BN10.</p>
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<p>Tribological properties of coatings and pre-coating (PC): friction coefficient.</p>
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11 pages, 240 KiB  
Article
A Study of the Impact of Surgical Correction of Left Abomasal Displacement on Fertility Parameters in Lactating Holstein Cows
by Ioannis Nanas, Eleni Dovolou, Katerina Dadouli, Ilias Ramouzis and Georgios S. Amiridis
Agriculture 2024, 14(9), 1487; https://doi.org/10.3390/agriculture14091487 - 1 Sep 2024
Viewed by 357
Abstract
The left displacement of the abomasum (LDA) is a common condition in dairy cows that can significantly impact their welfare, productivity, and fertility. This study was carried out in Greek dairy farms over a period of 3 years. To ensure early detection, the [...] Read more.
The left displacement of the abomasum (LDA) is a common condition in dairy cows that can significantly impact their welfare, productivity, and fertility. This study was carried out in Greek dairy farms over a period of 3 years. To ensure early detection, the farmers were trained to accurately identify the disease. The reproductive performance and milk production of 306 cows was assessed by considering the time to the first estrus, the calving-to-conception interval, and the number of artificial inseminations required for the establishment of pregnancy. Uterine health status, the timing of disease diagnosis, and the season of the year were also evaluated. In a separate study, the outcomes of 26 cases where cows suffered LDA and underwent surgical treatment with a delay of at least one week from disease onset, were compared to those of cases promptly treated. The results indicate that even early identification and treatment of LDA affects fertility and milk yield; these impacts worsen with the co-existence of uterine infections of affected. However, in late-treated cases, all reproductive and production indices show significant deterioration. Our findings suggest that timely diagnosis of the disease, preferably by the farmer, ensures minimal losses in cows affected by LDA. Full article
(This article belongs to the Section Farm Animal Production)
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