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14 pages, 2088 KiB  
Article
Biodegradation of Cyanide Using Soda Lake-Derived Alkaliphilic Microbial Consortia
by Getnet Belay, Carolina Suarez, Catherin J. Paul and Addis Simachew
Water 2024, 16(20), 2956; https://doi.org/10.3390/w16202956 - 17 Oct 2024
Viewed by 191
Abstract
Biological treatment processes at low or neutral pH are ineffective for gold mine wastewater treatment. The aim of this study was to develop a new cyanide-rich gold mine wastewater treatment system using alkaliphilic microbial consortia from the Ethiopian Rift Valley soda lake, Lake [...] Read more.
Biological treatment processes at low or neutral pH are ineffective for gold mine wastewater treatment. The aim of this study was to develop a new cyanide-rich gold mine wastewater treatment system using alkaliphilic microbial consortia from the Ethiopian Rift Valley soda lake, Lake Chitu. The treatment setup incorporates aerobic and anoxic reactors connected in series and operated for about 200 treatment days. Simulated gold mine wastewater was formulated in the laboratory. Colorimetry was used to measure residual cyanide and reactive nitrogen molecules derived from cyanide biodegradation. Flocks and biofilms developed in the reactors during the acclimatization process. Using sodium cyanide at 200 mg/L as an initial concentration, the consortia degraded to 99.74 ± 0.08% of cyanide, with no significant variation (p > 0.05) occurring when the dose was increased to 800 mg/L. However, changes were observed (p < 0.05) at 1000 mg/L. Acetate was the preferred carbon source for the consortia. The established consortia effectively degraded cyanide to levels below the permissible discharge limit set by the International Cyanide Management Institute (ICMI). This study provides insights into the effectiveness of alkaliphilic microbial consortia derived from soda lakes for treating cyanide-polluted wastewater. Full article
(This article belongs to the Section Wastewater Treatment and Reuse)
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<p>The sampling area map. The map in the upper left shows Ethiopia, while the upper right (green) shows the Oromia Regional State. The lower right (red) highlights Siraro District (Wereda), where Lake Chitu is located. The bottom left (blue) shows Lake Chitu.</p>
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<p>Schematic diagrams of the treatment setup.</p>
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<p>The biofilm formed during the consortia establishment process (<b>A</b>): biofilm formed on the wall of the reactor; (<b>B</b>): biofilm formed at the base of the reactor.</p>
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<p>Cyanide degradation and pH of the solution during the consortia establishment period. The initial residual cyanide concentration in the solution was 97.93 mg/L. (<b>A</b>): Residual cyanide concentration along the treatment period and cyanide percent removal; (<b>B</b>): the pH of the solution in the influent, aerobic reactor, and anoxic reactor.</p>
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<p>Dynamics of nitrogen metabolisms in the aerobic and anoxic reactors and final effluent (<b>A</b>): production and depletion of TAN; (<b>B</b>): nitrite-N (<b>C</b>) nitrate-N.</p>
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<p>The cyanide and cyanide derivative removal potential of the consortia. (<b>A</b>): Cyanide percent removal of the consortia for 200 mg/L, 400 mg/L, 600 mg/L, 800 mg/L, and 1000 mg/L; (<b>B</b>): final effluent concentration of TAN, nitrite-N, and nitrate-N when the consortia were fed with 200 mg/L, 400 mg/L, 600 mg/L, 800 mg/L, and 1000 mg/L.</p>
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<p>Impact of glycerol and sodium cyanide as a carbon source in the treatment system. (<b>A</b>): Cyanide % removal when glycerol and sodium acetate were used as a carbon source (<b>B</b>): The pH value in the aerobic and anoxic reactors and the final effluent when glycerol and sodium acetate were used as a carbon source.</p>
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<p>Percent removal of cyanide and the concentration of TAN, nitrite-N, nitrate-N, TAN, and TIN of the final effluent for different flow rates. (<b>A</b>): Percent removal of cyanide for the flow rates of 0.8 mL/min, 1 mL/min, and 1.2 mL/min; (<b>B</b>): the concentration of TAN, nitrite-N, nitrate-N, TAN, and TIN for 0.8 mL/min, 1 mL/min, and 1.2 mL/min.</p>
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22 pages, 3484 KiB  
Systematic Review
The Integration of Land Restoration and Biodiversity Conservation Practices in Sustainable Food Systems of Africa: A Systematic Review
by Monde Rapiya, Wayne Truter and Abel Ramoelo
Sustainability 2024, 16(20), 8951; https://doi.org/10.3390/su16208951 - 16 Oct 2024
Viewed by 417
Abstract
Land degradation poses a significant global challenge, adversely affecting soil quality and diminishing the productivity of arable land, which, in turn, impacts food production and ecosystem services. This degradation manifests in various forms, including soil compaction, salinity, nutrient depletion, loss of biodiversity, and [...] Read more.
Land degradation poses a significant global challenge, adversely affecting soil quality and diminishing the productivity of arable land, which, in turn, impacts food production and ecosystem services. This degradation manifests in various forms, including soil compaction, salinity, nutrient depletion, loss of biodiversity, and contamination, ultimately rendering soil unproductive and exacerbating climate change. Given the challenges arising from conventional farming practices and climate change, there is an urgent necessity to develop agricultural systems that not only enhance agronomic efficiency but also improve environmental performance. This study focuses on addressing food security in Africa by investigating the role of land restoration and biodiversity in sustainable food systems through a comprehensive bibliometric analysis for documents between 2010 to 2023, identifying 64 relevant documents. The analysis reveals insights into the most-cited documents and thematic evolution, underscoring the significant contributions from Ethiopia and advocating for collaborative efforts among African nations. Key themes identified include “climate change”, “food security”, “biodiversity conservation”, and “agroecosystems”, all highlighting the importance of sustainable agricultural practices. The study anticipates a continued prioritization of agroecosystems, smart agriculture, and biodiversity conservation to tackle food security challenges in the face of climate change. Collaboration, investment in research, and practical initiatives emerge as essential components for achieving sustainable food security and mitigating climate change impacts in Africa. This research provides valuable insights into the current landscape and future trends regarding the contributions of land restoration and biodiversity to food systems in Africa, emphasizing the critical need for concerted efforts to address these pressing issues. Full article
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<p>The impact of land restoration (depicted in green) and land degradation (represented in black) on livelihoods. Source: International Resource Panel-IRP [<a href="#B29-sustainability-16-08951" class="html-bibr">29</a>].</p>
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<p>The synergetic influence of agroecological systems on biodiversity conservation and food security.</p>
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<p>Integration of land restoration and biodiversity practices for sustainable food system.</p>
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<p>Systematic review process flow diagram of the selection process of publications for WoS, Scopus, and Dimensions databases based on PRISMA (<a href="#app1-sustainability-16-08951" class="html-app">Supplementary Materials</a>). * Indicate the number of documents from each databases. ** indicate the number of documents excluded.</p>
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<p>The contribution by country of the corresponding author’s country, representing inter-country (<b>MCP</b>) collaboration and intra-country (<b>SCP</b>) collaboration.</p>
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<p>Author’s keywords co-occurrence network on land restoration and biodiversity in food systems of Africa: various colors indicate word clusters; label size indicates how frequently each keyword occurs. The same cluster of keywords is frequently listed together.</p>
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<p>Thematic map representation of keywords in publications on land restoration, biodiversity, and food systems in Africa.</p>
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<p>A word cloud of the 20 most frequently used research keywords.</p>
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<p>Dynamic view of authors’ keywords over time.</p>
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19 pages, 3010 KiB  
Article
Identification of Spatial Patterns of Soil Erosion Based on the Combination of RUSLE and MCDA in the Ahferom District, Northern Ethiopia
by Gebreslassie Welu Hailemariam, Jianlin Zhao and Awdenegest Moges
Land 2024, 13(10), 1684; https://doi.org/10.3390/land13101684 (registering DOI) - 16 Oct 2024
Viewed by 256
Abstract
Soil erosion is a widespread concern that is indeed considered to be a significant environmental issue, and it has particularly severe consequences in less developed countries like Ethiopia. An effective watershed management procedure for establishing priority is supported by the identification of erosion-susceptible [...] Read more.
Soil erosion is a widespread concern that is indeed considered to be a significant environmental issue, and it has particularly severe consequences in less developed countries like Ethiopia. An effective watershed management procedure for establishing priority is supported by the identification of erosion-susceptible areas. Therefore, the main objective of the study was to assess soil erosion dynamics and its spatial pattern using a novel methodological framework combining the RUSLE and MCDA. The study used data on land use and cover, topography, soil, and climatic data. The analytical hierarchy process (AHP) were used to identify soil erosion-susceptible areas and the factors were weighted using a pairwise comparison matrix, and weights were combined using weighted overlay in GIS. Our results indicated that the mean annual soil loss rate was 27.10 t ha−1 yr−1, while the total soil loss from the entire study area was 3.11 Mt. The highest soil loss was observed in bare land (30.54 t ha−1 yr−1) and farmland (23.65 t ha−1 yr−1), which were considered as the most susceptible land types to erosion. Likewise, 10.3% of the study area is very highly susceptible; 20.2% is highly susceptible, 24.2% of the area is moderately susceptible, 27.1% is low, and 18.2% has very low susceptibility. The district’s most significant erosion-susceptible areas are characterized by steep slopes that are composed of farmland and bare land. This suggests the majority of the area is susceptible to erosion, requiring interventions to reverse the alarming degradation level. The presented framework has a board application to estimate regional soil erosion and to identify spatial patterns of soil erosion. Full article
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<p>Study area map.</p>
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<p>Workflow of assessment of the risk of soil erosion.</p>
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<p>Land use and land cover map.</p>
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<p>Soil erosion factor map. (<b>a</b>) <span class="html-italic">R</span> factor, (<b>b</b>) <span class="html-italic">K</span> factor, (<b>c</b>) <span class="html-italic">LS</span> factor, (<b>d</b>) <span class="html-italic">C</span> factor, (<b>e</b>) <span class="html-italic">P</span> factor.</p>
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<p>Soil loss map (RUSLE).</p>
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<p>Erosion susceptibility controlling factors. (<b>A</b>) LULC, (<b>B</b>) slope, (<b>C</b>) topographic wetness index, (<b>D</b>) stream power index, (<b>E</b>) NDVI, (<b>F</b>) flow accumulation, (<b>G</b>) drainage density, (<b>H</b>) soil type, (<b>I</b>) rainfall, and (<b>J</b>) elevation.</p>
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<p>Soil erosion susceptibility map (MCDA).</p>
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<p>MCDA-RUSLE soil erosion susceptibility map. NB (Nota Bene): Vls (very low susceptibility), Vsl (very slight), Ls (low susceptibility), Sl (slight), Ms (moderately susceptible), Hs (highly susceptible), Vsv (very severe), Sv (severe), Vhs (very highly susceptible), Mod (moderate), Ms (moderately susceptible).</p>
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19 pages, 1686 KiB  
Article
Evaluation of Integrated Anaerobic/Aerobic Conditions for Treating Dye-Rich Synthetic and Real Textile Wastewater Using a Soda Lake Derived Alkaliphilic Microbial Consortia
by Tadele Assefa Aragaw, Carolina Suarez, Catherine J. Paul and Addis Simachew
Water 2024, 16(20), 2937; https://doi.org/10.3390/w16202937 (registering DOI) - 15 Oct 2024
Viewed by 351
Abstract
Textile industry wastewater (WW) has intense color, high chemical oxygen demand (COD), pH, and salinity, making it challenging for conventional treatment. Soda lakes, with high alkalinity and salinity, host diverse microbes capable of textile dye degradation. This study evaluated anaerobic/aerobic reactors using alkaliphilic [...] Read more.
Textile industry wastewater (WW) has intense color, high chemical oxygen demand (COD), pH, and salinity, making it challenging for conventional treatment. Soda lakes, with high alkalinity and salinity, host diverse microbes capable of textile dye degradation. This study evaluated anaerobic/aerobic reactors using alkaliphilic microbial consortia from Lake Chitu, an Ethiopian soda lake, for treating synthetic and real textile WW. The experimental setup consisted of a first-stage anaerobic reactor followed by a second-stage aerobic reactor, operating continuously with a predetermined flow rate and hydraulic residence time. After evaluating synthetic WW, real textile WW was collected in two batches (rounds I and II). The treatment setup removed 99% of the dye color for synthetic WW, 98% for round I, and 96% for round II. COD removal was 87% for synthetic WW, 86% for round I, and 93.37% for round II. TKN removal reached 90% for synthetic WW, 91% for round I, and 96% for round II at a steady state. Residual COD and TKN values met the final effluent discharge standards. GC–MS and IR analyses revealed that dyes were broken down into intermediate organic compounds under anaerobic conditions and further degraded into smaller molecules under aerobic conditions. This integrated reactor approach effectively removes dyes and enhances COD and TKN removal. The study’s novelty lies in evaluating both synthetic and real textile WW using integrated reactors under alkaline conditions in a continuous process, inoculating alkaliphilic consortia, without pre-enrichment or external nutrient addition to real WW. The study provides insights into the effectiveness of alkaliphilic microbial consortia derived from soda lakes for treating textile WW using integrated reactor conditions. Reactor microbiome characterization is needed to further explore microbial diversity and community structure. Full article
(This article belongs to the Special Issue Advances in Biological Technologies for Wastewater Treatment)
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Graphical abstract

Graphical abstract
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<p>Experimental setup flow layouts for the continuous anaerobic/aerobic integrated treatment process.</p>
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<p>Decolorization trends in the integrated anaerobic/aerobic continuous treatment process for synthetic WW (<b>A</b>) and real textile WW collected for rounds I and II (<b>B</b>,<b>C</b>). The <span class="html-italic">y</span>-axis shows the residual dyes and percentage of color removal, while the x-axis shows the treatment time. For round II collected WW (<b>C</b>), two peaks were detected, and the color removal was evaluated for the two λmax (575 nm and 420 nm).</p>
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<p>UV–Vis spectral analysis of before and after treatment of (<b>A</b>) synthetic WW and (<b>B</b>,<b>C</b>) real textile WW round I and II collected samples.</p>
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<p>TKN determination in untreated, anaerobic, and aerobic reactors and clarifiers in the anaerobic/aerobic integrated treatment process. Residual TKN value in mg/L (<b>A</b>). Percentage removal of TKN (<b>B</b>).</p>
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<p>FTIR spectra of untreated textile WW, a 5-day anaerobically acclimatized sample, and the final effluent.</p>
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<p>Chromatograms for untreated, 5-day anaerobically acclimatized, and treated textile industry WW samples.</p>
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20 pages, 971 KiB  
Article
Assessing the Impact of Productive Safety Net Program on Soil and Water Conservation Practices in the Amhara Sayint Woreda, Ethiopia
by Yemata Demissie, Alem-meta Assefa, Mare Addis and William A. Payne
Agriculture 2024, 14(10), 1818; https://doi.org/10.3390/agriculture14101818 (registering DOI) - 15 Oct 2024
Viewed by 408
Abstract
Land degradation is a critical issue in Ethiopia, exacerbating food insecurity by reducing agricultural productivity. Soil and water conservation (SWC) practices are essential to control erosion and increase food production. However, there is a lack of comprehensive evaluations on the impact of Ethiopia’s [...] Read more.
Land degradation is a critical issue in Ethiopia, exacerbating food insecurity by reducing agricultural productivity. Soil and water conservation (SWC) practices are essential to control erosion and increase food production. However, there is a lack of comprehensive evaluations on the impact of Ethiopia’s Productive Safety Net Program (PSNP) on SWC practices. This study aimed to assess the contribution of the PSNP to SWC in the Amhara Sayint Woreda. The researchers used a mixed-method approach, combining quantitative and qualitative data. Multistage sampling was used to select households, and data were collected through questionnaires, interviews, focus groups, and observations. The study provided empirical evidence that the PSNP has a positive impact on SWC practices. Key factors influencing SWC participation include age, family size, education, plot size, livestock ownership, credit service, and access to extension services. The results suggest that the PSNP should improve payment for public work participants implementing SWC, undertake institutional reform, and increase public awareness of the benefits of SWC in reversing land degradation and improving food security. This study uniquely contributes to the understanding of how the PSNP influences the varying degrees of participation in SWC practices, filling a critical research gap. The findings can inform policymakers and program managers to enhance the PSNP’s effectiveness in promoting sustainable land management and food security in Ethiopia. Full article
(This article belongs to the Section Agricultural Economics, Policies and Rural Management)
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<p>Conceptual framework of the study.</p>
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<p>Map of the study area (<b>a</b>) Map of Ethiopia; (<b>b</b>) Map of Amhara Region.</p>
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12 pages, 1262 KiB  
Article
Evaluation of the Efficacy of Three Newcastle Disease Vaccines Produced at the National Veterinary Institute, Bishoftu, Ethiopia, at Different Temperature Storage Conditions
by Teferi Degefa, Mahlet Birehanu, Demise Mulugeta, Henok Ferede, Endalkachew Girma, Anberber Alemu, Dassalegn Muleta, Abebe Mengesha Aga, Debebe Shimeket, Dereje Nigussie Woldemichael, Mirtneh Akalu and Fanos Tadesse Woldemariyam
Acta Microbiol. Hell. 2024, 69(4), 212-223; https://doi.org/10.3390/amh69040020 - 15 Oct 2024
Viewed by 271
Abstract
Newcastle disease, which affects poultry and is endemic in many nations across the world, is caused by Avian Paramyxovirus-1 (APMV-1). This experimental study was conducted from January to June 2021 at the National Veterinary Institute (NVI) to evaluate the virus viability and antibody [...] Read more.
Newcastle disease, which affects poultry and is endemic in many nations across the world, is caused by Avian Paramyxovirus-1 (APMV-1). This experimental study was conducted from January to June 2021 at the National Veterinary Institute (NVI) to evaluate the virus viability and antibody titer of Newcastle disease vaccines (Hichner’s B1, Lasota, and ThermostableI2) stored at different temperature storage conditions. Chickens (12 treatment groups and 1 control group) were vaccinated and challenged with the virulent ND virus (0.5 × 106.5 embryonic lethal dose fifty (ELD50)). The immune responses (antibody titers) of chickens were evaluated using hemagglutination (HA) and hemagglutination inhibition (HI) assays. The Newcastle disease vaccines (Hachiner’s B1 (ND-HB1), ND-Lasota, and ND-Thermostable I2) stored at +4 °C HI-induced antibody titers of 151 (±103.3), 136 (±53.4), and 145 (±91) on day 14, respectively, whereas on day 21, they increased to 160 (±82) for ND-HB1 and 144 (±74.5) for ND-Lasota. ND-Thermostable I2 showed a decrement to 133 (±44.8). All three vaccines stored at different temperature storage conditions (+4, +23, and +30 °C) used in this experiment induced antibody titers greater than 128 on day 28 post-vaccination, except the Newcastle disease vaccine Thermostable I2 stored at +30 °C. The vaccines collected from private veterinary drugstores (customer vaccines Hachiner’s B1 and ND-Thermostable I2) used in this experiment induced very low antibody titers, less than 128 antibody titers, from days 14 to 21. Statistically significant induced mean antibody titers were observed for chickens that received vaccines stored at different temperature storage conditions for 72 h (p < 0.05), except for the ND-HB1 mean HI-induced antibody titer at days 7 and 28. Further, vaccine protection was confirmed by inoculation of both the vaccinated (treatment groups) and control groups by the virulent ND virus, where the control group started dying three days post-challenge but all chicks that received the vaccines survived. Overall, this study showed the impact of temperature storage conditions on the antibody titer and their effect on the titer of the viable virus in the vaccine, and thereby its protective capacity, warranting appropriate cold chain management of the vaccines along the value chain. Full article
(This article belongs to the Special Issue Feature Papers in Medical Microbiology in 2024)
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<p>Induced antibody titer of the ND-Lasota vaccine from day zero up to twenty-eight days; 4 (blue), 23 (yellow), 30 (gray), and customer vaccine (bright yellow) indicate the temperature storage conditions of the vaccines.</p>
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<p>Induced antibody titers of ND-HB1 vaccine from day zero up to twenty-eight; 4 (blue), 23 (yellow), and 30 (gray) indicate the temperature storage conditions of the vaccines.</p>
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<p>Induced antibody titers of Newcastle Thermostable I2 vaccine from day zero up to twenty-eight days; 4 (blue), 23 (yellow), 30 (gray), and customer vaccine (bright yellow) indicate the temperature storage conditions of the vaccines.</p>
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<p>Gel electrophoresis of the virulent strain of Newcastle disease virus was detected using polymerase chain reaction (PCR). Legend: S1–S4: brain tissue from control chickens that died after challenge; S5, S7 and S9: trachea swabs from control chickens that died after the challenge; S6 and S8: spleen samples from vaccinated and challenged chickens.</p>
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17 pages, 7845 KiB  
Article
Production of Long-Fiber Pulp from Enset Plant Residues by Soda Pulping
by Hanna Berhanu Lemma, Friedrich Steffen, Abubeker Yimam Ali and Bodo Saake
Molecules 2024, 29(20), 4874; https://doi.org/10.3390/molecules29204874 (registering DOI) - 14 Oct 2024
Viewed by 257
Abstract
This paper evaluates the modification of fiber morphology and the strength property development of paper from Enset fiber as a function of soda pulping conditions and refining energy. Soda pulping was conducted at pulping temperatures between 160 and 180 °C. The NaOH charge [...] Read more.
This paper evaluates the modification of fiber morphology and the strength property development of paper from Enset fiber as a function of soda pulping conditions and refining energy. Soda pulping was conducted at pulping temperatures between 160 and 180 °C. The NaOH charge was 16, 20, and 24% based on the initial raw material. The beating of pulp was conducted using a Jokro mill. The refining of pulp was conducted in a laboratory refiner at different refining intensities. The mild Jokro mill beating was not effective on Enset fiber pulp. On the other hand, the laboratory refiner effectively refined the pulp. The fiber morphology was altered in the way of improving the paper formation and strength. The beating degree of the pulp was increased to about 49 °SR. The tensile index was enhanced to around 80 Nm/g using a refining energy input of 250 kwh/t. From the results, it can be concluded that Enset fiber pulp is suitable for packaging papers due to its high strength level. On the other hand, Enset fiber can be a potential raw material for specialty papers like filter paper and tea bags because of its high porosity. Full article
(This article belongs to the Special Issue Lignocellulosic Biomass III)
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<p>The pulp yield (<b>a</b>), kappa number (<b>b</b>), and carbohydrate composition (<b>c</b>) of the soda pulps from the pulping of Enset fiber at different temperatures and different NaOH charges.</p>
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<p>The pulp yield (<b>a</b>), kappa number (<b>b</b>), and carbohydrate composition (<b>c</b>) of the soda pulps from the pulping of Enset fiber at different temperatures and different NaOH charges.</p>
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<p>Fiber length distribution data for the pulps made at 160 °C (<b>a</b>), 170 °C (<b>b</b>), and 180 °C (<b>c</b>) at a 16% NaOH charge at beating times of 0–30 min.</p>
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<p>Fiber length distribution data for the pulps made at 160 °C (<b>a</b>), 170 °C (<b>b</b>), and 180 °C (<b>c</b>) at a 16% NaOH charge at beating times of 0–30 min.</p>
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<p>The pulp yield, kappa number (<b>a</b>), and carbohydrate composition (<b>b</b>) of the soda pulps from pulping at different NaOH charges using a paddle digester.</p>
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<p>The average fiber length (<b>a</b>), fiber fines (<b>b</b>), CWT (<b>c</b>), and fibrillation (<b>d</b>) of the soda pulps from pulping at different NaOH charges depending on the refining energy.</p>
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<p>Fiber length distribution of the soda pulps from pulping at different NaOH charges depending on the refining energy: (<b>a</b>) 0 kWh/t and (<b>b</b>) 250 kWh/t.</p>
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<p>The beating degree (<b>a</b>) and strength properties of the soda pulps from pulping at different NaOH charges depending on the refining energy: (<b>b</b>) tensile index; (<b>c</b>) tear index; and (<b>d</b>) burst index.</p>
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26 pages, 3516 KiB  
Article
Early Cervical Cancer Diagnosis with SWIN-Transformer and Convolutional Neural Networks
by Foziya Ahmed Mohammed, Kula Kekeba Tune, Juhar Ahmed Mohammed, Tizazu Alemu Wassu and Seid Muhie
Diagnostics 2024, 14(20), 2286; https://doi.org/10.3390/diagnostics14202286 - 14 Oct 2024
Viewed by 272
Abstract
Introduction: Early diagnosis of cervical cancer at the precancerous stage is critical for effective treatment and improved patient outcomes. Objective: This study aims to explore the use of SWIN Transformer and Convolutional Neural Network (CNN) hybrid models combined with transfer learning to classify [...] Read more.
Introduction: Early diagnosis of cervical cancer at the precancerous stage is critical for effective treatment and improved patient outcomes. Objective: This study aims to explore the use of SWIN Transformer and Convolutional Neural Network (CNN) hybrid models combined with transfer learning to classify precancerous colposcopy images. Methods: Out of 913 images from 200 cases obtained from the Colposcopy Image Bank of the International Agency for Research on Cancer, 898 met quality standards and were classified as normal, precancerous, or cancerous based on colposcopy and histopathological findings. The cases corresponding to the 360 precancerous images, along with an equal number of normal cases, were divided into a 70/30 train–test split. The SWIN Transformer and CNN hybrid model combines the advantages of local feature extraction by CNNs with the global context modeling by SWIN Transformers, resulting in superior classification performance and a more automated process. The hybrid model approach involves enhancing image quality through preprocessing, extracting local features with CNNs, capturing the global context with the SWIN Transformer, integrating these features for classification, and refining the training process by tuning hyperparameters. Results: The trained model achieved the following classification performances on fivefold cross-validation data: a 94% Area Under the Curve (AUC), an 88% F1 score, and 87% accuracy. On two completely independent test sets, which were never seen by the model during training, the model achieved an 80% AUC, a 75% F1 score, and 75% accuracy on the first test set (precancerous vs. normal) and an 82% AUC, a 78% F1 score, and 75% accuracy on the second test set (cancer vs. normal). Conclusions: These high-performance metrics demonstrate the models’ effectiveness in distinguishing precancerous from normal colposcopy images, even with modest datasets, limited data augmentation, and the smaller effect size of precancerous images compared to malignant lesions. The findings suggest that these techniques can significantly aid in the early detection of cervical cancer at the precancerous stage. Full article
(This article belongs to the Special Issue Machine Learning in Obstetrics and Gynecology Diagnosis)
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<p>(<b>a</b>) Colposcopy images from each of the normal, precancerous, and cancer groups. (<b>b</b>) Provisional diagnosis vs. cancer status: The provisional diagnosis during colposcopy, which relies on the clinician’s initial visual and clinical assessment, is important for categorizing cervical lesions as normal, precancerous, or cancerous. An analysis of the provided dataset highlights specific provisional diagnoses associated with each final cancer status. For cases ultimately confirmed as normal, the most frequent provisional diagnosis was “Type 1 Transition Zone (TZ); normal.” In precancerous cases, “Types 1, 2, and 3 TZ; HSIL” and “Type 1 TZ; LSIL” were commonly noted. For cancer cases, “Type 3 TZ; suspicion of invasive squamous cell carcinoma” was the predominant provisional diagnosis.</p>
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<p>Histopathology vs. cancer diagnosis: A histopathological analysis was used to determine the final diagnosis of cervical lesions identified during colposcopy. In normal cases, histopathology was often not performed, suggesting that the colposcopy assessment alone was sufficient. When histopathology was performed, findings such as CIN1 or the absence of dysplasia supported the normal diagnosis. Precancerous cases were characterized by moderate to severe dysplasia (CIN2, CIN3), low-grade squamous intraepithelial lesions (LSILs), and high-grade squamous intraepithelial lesions (HSILs), indicating varying degrees of abnormality with potential progression to cancer. Cancer cases were confirmed by histopathological evidence of invasive adenocarcinoma, squamous cell carcinoma, or adenocarcinoma in situ. These findings highlight the role of histopathology in accurately diagnosing and categorizing cervical lesions, guiding appropriate patient management and treatment strategies.</p>
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<p>An architectural flowchart illustrating the integrated process where the SWIN Transformer architecture and CNN are combined into a hybrid model for the binary classification of colposcopy images. This diagram highlights the seamless interaction between the two components, demonstrating how they work together to enhance the accuracy of image classification. The CNN and SWIN Transformer processes are parallel, and both outputs are integrated before classification. This flowchart includes specific steps within the SWIN Transformer architecture (swin_base_patch4_window7_224), such as patch partitioning, embedding, window-based self-attention, and merging, before integrating with the CNN outputs. After integration, the process flows through classification, post-processing, and final output generation. Detailed steps and the Python code are available at <a href="https://github.com/Foziyaam/SWIN-Transformer-and-CNN-for-Cervical-Cancer" target="_blank">https://github.com/Foziyaam/SWIN-Transformer-and-CNN-for-Cervical-Cancer</a>.</p>
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<p>Summary statistics—overall case diagnosis distribution: This summary statistics provides an overview of the distribution of colposcopy cases by diagnosis, Swede score distribution, and HPV status distribution, encapsulating the key aspects of the clinical findings. The distribution of overall case diagnoses indicates a predominance of non-cancer cases, with a significant portion of precancerous and some cancer cases.</p>
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<p>Distribution of cancer diagnoses by HPV status and transformation zone. These are 196 cases, since one of the cases does not have HPV test results.</p>
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<p>Correlation between Swede scores and cancer diagnosis. (<b>a</b>) Normal cases have the lowest-to-no Swede scores and precancerous moderate, while cancer cases have very high Swede scores. (<b>b</b>) Swede scores were significantly correlated with cancer diagnosis (r = 0.3 and <span class="html-italic">p</span> = 2e−05) and negatively correlated with normal diagnosis (r = 0.2 and <span class="html-italic">p</span> = 9e−04) while there was no significant correlation with the precancerous diagnosis.</p>
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<p>(<b>a</b>) Training loss across epochs; fivefold cross-validation metrics (red curve is the smoothing of the actual curve—the black line): (<b>b</b>) validation ROC curve for the validation set; (<b>c</b>) confusion matrix for the validation set. Validation sensitivity, 0.86; specificity, 0.90; positive predictive value (precision), 0.92; negative predictive value, 0.81; accuracy, 0.87; F1 score, 0.88; and AUC, 0.94.</p>
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<p>Performance of the trained model on the first test data (precancerous vs. normal): (<b>a</b>) ROC curve for test set 1 (precancerous versus normal); (<b>b</b>) confusion matrix for the performance of the model on test set 1 (precancerous vs. normal group). The values of the model’s performance metrics include sensitivity, 0.75; specificity, 0.75; positive predictive value, 0.76; negative predictive value, 0.74; accuracy, 0.75; F1 score, 0.75; and AUC, 0.80. The performance was tested using the same hyperparameters that were used for training: batch size = 32, epochs = 30, learning rate = 5e−05, weight decay = 5e−02, and gamma = 0.8.</p>
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<p>Performance of the second test set (images from cancer and normal cases): (<b>a</b>) ROC curve for test set 2 (cancer versus normal); (<b>b</b>) confusion matrix for the performance of the model on test set 2 (cancer vs. normal). Values of the important metrics include sensitivity, 0.72; specificity, 0.80; positive predictive value, 0.85; negative predictive value, 0.65; accuracy, 0.75; F1, 0.78; and AUC, 0.82. The same hyperparameters were used for this evaluation as well.</p>
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11 pages, 3085 KiB  
Article
Partial Sequence Analysis of Commercial Peste des Petits Ruminants Vaccines Produced in Africa
by Boubacar Barry, Yebechaye Tessema, Hassen Gelaw, Cisse Rahamatou Moustapha Boukary, Baziki Jean de Dieu, Melesse Ayelet Gelagay, Ethel Chitsungo, Richard Rayson Sanga, Gbolahanmi Akinola Oladosu, Nick Nwankpa and S. Charles Bodjo
Vet. Sci. 2024, 11(10), 500; https://doi.org/10.3390/vetsci11100500 - 13 Oct 2024
Viewed by 898
Abstract
Peste des petits ruminants virus (PPRV), which is the only member of the Morbillivirus caprinae species and belongs to the genus Morbillivirus within the Paramyxoviridae family, causes the highly contagious viral sickness “Peste des petits ruminants (PPR).” PPR is of serious economic significance [...] Read more.
Peste des petits ruminants virus (PPRV), which is the only member of the Morbillivirus caprinae species and belongs to the genus Morbillivirus within the Paramyxoviridae family, causes the highly contagious viral sickness “Peste des petits ruminants (PPR).” PPR is of serious economic significance for small ruminant production, particularly in Africa. Control of this critical disease depends highly on successful vaccination against the PPRV. An in-depth understanding of the genetic evolution of the live-attenuated PPR vaccine Nigeria 75/1 strain used in Africa is essential for the successful eradication of this disease by 2030. Therefore, this study investigated the possible genetic evolution of the PPR vaccine produced by various African laboratories compared with the master seed available at AU-PANVAC. RT-PCR was performed to amplify a segment of the hypervariable C-terminal part of the nucleoprotein (N) from commercial batches of PPR vaccine Nigeria 75/1 strain. The sequences were analyzed, and 100% nucleotide sequence identity was observed between the master seed and vaccines produced. The results of this study indicate the genetic stability of the PPR vaccine from the Nigeria 75/1 strain over decades and that the vaccine production process used by different manufacturers did not contribute to the emergence of mutations in the vaccine strain. Full article
(This article belongs to the Section Veterinary Microbiology, Parasitology and Immunology)
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<p>Gel electrophoresis results of RT-PCR with PPR vaccine samples (1 to 45) from 10 Manufacturers, (1–10) from Manufacturer 01 (NVI), (11–12) from Manufacturer 02 (KEVEVAPI), (13–20) from Manufacturer 03 (LANAVET), (21–24) from Manufacturer 04 (MCI), (25–30) from Manufacturer 05 (ISRA), (31–37) from Manufacturer 06 (LCV), (38–40) from Manufacturer 07 (BVI), (41–42) from Manufacturer 08 (HESTER Tanzania), (43) from Manufacturer 09 (NVRI), (44) from Manufacturer 10 (NAPHL), and (45) the master seed (master seed, Vero 78), MW: 100 bp molecular weight marker, PC: AU-PANVAC PPR vaccine positive control, P: positive control, and N: negative control. The required band amplification with primers NP3 and NP4 is at 351 bp.</p>
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<p>(<b>a</b>) Multiple sequence alignment of 287-bp sequence in the C-terminus region, corresponding to nucleotides 1283 to 1522 of the N gene generated with PPR vaccine samples using Clustal Omega &lt; EMBL-EBI. Data have shown sequence homology of 100%. (<b>b</b>) Multiple sequence alignment of 287-bp sequence in the C-terminus region, corresponding to nucleotides 1253 to 1570 of the N gene generated with PPR vaccine samples using Clustal Omega &lt; EMBL-EBI. Data have shown a sequence homology of 100.</p>
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<p>(<b>a</b>) Multiple sequence alignment of 287-bp sequence in the C-terminus region, corresponding to nucleotides 1283 to 1522 of the N gene generated with PPR vaccine samples using Clustal Omega &lt; EMBL-EBI. Data have shown sequence homology of 100%. (<b>b</b>) Multiple sequence alignment of 287-bp sequence in the C-terminus region, corresponding to nucleotides 1253 to 1570 of the N gene generated with PPR vaccine samples using Clustal Omega &lt; EMBL-EBI. Data have shown a sequence homology of 100.</p>
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<p>Alignment of the generated consensus partial sequence of N gene (287 bp: nucleotides 1283 to 1448) with two published sequences of PPR virus Nigeria 75/1 strain (Genbank KY628761 and Diallo, 1994) using Clustal Omega &lt; EMBL-EBI.</p>
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19 pages, 1954 KiB  
Article
Spatial–Temporal Patterns in the Enteric Pathogen Contamination of Soil in the Public Environments of Low- and Middle-Income Neighborhoods in Nairobi, Kenya
by Fanta D. Gutema, Bonphace Okoth, John Agira, Christine S. Amondi, Phylis J. Busienei, Sheillah Simiyu, Blessing Mberu, Daniel Sewell and Kelly K. Baker
Int. J. Environ. Res. Public Health 2024, 21(10), 1351; https://doi.org/10.3390/ijerph21101351 - 12 Oct 2024
Viewed by 441
Abstract
Public spaces in countries with limited societal development can be contaminated with feces containing pathogenic microbes from animals and people. Data on contamination levels, spatial distribution, and the diversity of enteric pathogens in the public settings of low- and middle-income neighborhoods are crucial [...] Read more.
Public spaces in countries with limited societal development can be contaminated with feces containing pathogenic microbes from animals and people. Data on contamination levels, spatial distribution, and the diversity of enteric pathogens in the public settings of low- and middle-income neighborhoods are crucial for devising strategies that minimize the enteric infection burden. The objective of this study was to compare spatial–temporal differences in the detection rate and diversity of enteric pathogens in the public spaces of low- and middle-income neighborhoods of Nairobi, Kenya. TaqMan array card (TAC) molecular assays were employed to analyze soil samples for 19 enteropathogens, along with a selective bacterial culture for pathogenic Enterobacteriaceae. An observational assessment was conducted during every site visit to document the hygienic infrastructure and sanitation conditions at the sites. We detected at least one pathogen in 79% (127/160) and ≥2 pathogens in 67.5% (108/160) of the soil samples tested. The four most frequently detected pathogens were EAEC (67.5%), ETEC (59%), EPEC (57.5%), and STEC (31%). The detection rate (91% vs. 66%) and mean number of enteric pathogens (5 vs. 4.7) were higher in low-income Kibera than in middle-income Jericho. The more extensive spatial distribution of pathogens in Kibera resulted in increases in the detection of different enteric pathogens from within-site (area < 50 m2) and across-site (across-neighborhood) movements compared to Jericho. The pathogen detection rates fluctuated seasonally in Jericho but remained at sustained high levels in Kibera. While better neighborhood conditions were linked with lower pathogen detection rates, pathogenic E. coli remained prevalent in the public environment across both neighborhoods. Future studies should focus on identifying how the sources of pathogen contamination are modified by improved environmental sanitation and hygiene and the role of these contaminated public environments in enteric infections in children. Full article
(This article belongs to the Section Environmental Health)
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<p>A map showing selected public domain sites in the Kibera and Jericho neighborhoods in Nairobi County, Kenya.</p>
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<p>Distribution of the number of pathogens detected across sampling sites in Jericho and Kibera, Nairobi, Kenya (N = 160).</p>
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<p>Probability of exposure to one or more new types of enteric pathogens from public soil if someone moves between locations within one residential site (area &lt; 50 m<sup>2</sup>) versus between neighborhood sites in Jericho and Kibera.</p>
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<p>Probability of exposure to one or more new types of enteric pathogens in public soil if someone moves between neighborhoods from Jericho to Kibera versus Kibera to Jericho.</p>
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<p>Seasonal trends in the detection of EAEC, ETEC, EPEC, and STEC in public soil in Jericho and Kibera, Nairobi, Kenya. EAEC = enteroaggregative <span class="html-italic">E. coli</span>; ETEC = enterotoxigenic <span class="html-italic">E. coli</span>; EPEC = enteropathogenic <span class="html-italic">E. coli</span>; and STEC = Shiga toxin-producing <span class="html-italic">E. coli</span>.</p>
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22 pages, 448 KiB  
Article
Multiscale Change Point Detection for Univariate Time Series Data with Missing Value
by Tariku Tesfaye Haile, Fenglin Tian, Ghada AlNemer and Boping Tian
Mathematics 2024, 12(20), 3189; https://doi.org/10.3390/math12203189 - 11 Oct 2024
Viewed by 311
Abstract
This paper studies the autoregressive integrated moving average (ARIMA) state space model combined with Kalman smoothing to impute missing values in a univariate time series before detecting change points. We estimate a scale-dependent time-average variance constant that depends on the length of the [...] Read more.
This paper studies the autoregressive integrated moving average (ARIMA) state space model combined with Kalman smoothing to impute missing values in a univariate time series before detecting change points. We estimate a scale-dependent time-average variance constant that depends on the length of the data section and is robust to mean shifts under serial dependence. The consistency of the proposed estimator is shown under the assumption allowing heavy tailedness. Integrating the proposed estimator with the moving sum and wild binary segmentation procedures to determine the number and locations of change points is discussed. Furthermore, the performance of the proposed methods is evaluated through extensive simulation studies and applied to the Beijing multi-site air quality dataset to impute missing values and detect mean changes in the data. Full article
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<p>Histogram plots of estimated change points obtained from various methods under model (6), with true change points at 200, 400, 600, and 800.</p>
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<p>Daily average concentrations of PM2.5, plotted together with the change points detected by MOSUM.TAVC (<b>left</b>) and WBS2.TAVC (<b>right</b>) are denoted by blue vertical lines and estimated means are given by red horizontal lines.</p>
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10 pages, 306 KiB  
Article
Respiratory Symptoms and Paper Dust Exposure among Workers in the Paper Industry in Ethiopia: A Comparative Cross-Sectional Study
by Ararso Tafese, Abera Kumie, Bente E. Moen, Teferi Abegaz, Wakgari Deressa, Samson Wakuma Abaya and Magne Bråtveit
Int. J. Environ. Res. Public Health 2024, 21(10), 1331; https://doi.org/10.3390/ijerph21101331 - 8 Oct 2024
Viewed by 397
Abstract
Chronic respiratory symptoms are a health concern in the paper industry. This study evaluates the association between personal inhalable paper dust exposure and chronic respiratory symptoms among workers in this industry. In total, 270 workers from the paper industry and 267 from a [...] Read more.
Chronic respiratory symptoms are a health concern in the paper industry. This study evaluates the association between personal inhalable paper dust exposure and chronic respiratory symptoms among workers in this industry. In total, 270 workers from the paper industry and 267 from a water bottling factory participated. Chronic respiratory symptoms were assessed using a standardized questionnaire, modified from the American Thoracic Society. A job exposure matrix, based on cross-sectional personal measurements of inhalable paper dust, was used to estimate the exposure–response relationship between cumulative dust exposure and chronic respiratory symptoms. There was a higher prevalence of chronic coughs (27.4% vs. 7.5%), breathlessness (25.6% vs. 11%), coughs with sputum (21.1% vs. 1.1%), and wheezing (25.6% vs. 5%) among paper workers compared to those in the water bottling industry. A Poisson regression analysis revealed that the prevalence ratios for chronic coughs (APR = 3.3 and 95% CI: 2.0–5.4), breathlessness (APR = 2.2 and 95% CI: 1.4–3.4), and wheezing (APR = 4.3 and 95% CI: 2.3–7.7) were significantly higher in paper workers than in water bottling workers. Among paper workers, a significant exposure–response relationship was observed between cumulative dust exposure and chronic coughs after adjusting for age, sex, history of respiratory illnesses, work in other dusty industries, and use of biofuels. As there were only four ever-smokers, smoking was not included in the regression analysis. The results show a significant association between dust exposure and coughing, highlighting the need for control measures to prevent the development of respiratory symptoms among workers. Full article
(This article belongs to the Section Environmental Health)
31 pages, 1685 KiB  
Review
Biochemical Defence of Plants against Parasitic Nematodes
by Birhanu Kahsay Meresa, Jasper Matthys and Tina Kyndt
Plants 2024, 13(19), 2813; https://doi.org/10.3390/plants13192813 - 8 Oct 2024
Viewed by 663
Abstract
Plant parasitic nematodes (PPNs), such as Meloidogyne spp., Heterodera spp. and Pratylenchus spp., are obligate parasites on a wide range of crops, causing significant agricultural production losses worldwide. These PPNs mainly feed on and within roots, impairing both the below-ground and the above-ground [...] Read more.
Plant parasitic nematodes (PPNs), such as Meloidogyne spp., Heterodera spp. and Pratylenchus spp., are obligate parasites on a wide range of crops, causing significant agricultural production losses worldwide. These PPNs mainly feed on and within roots, impairing both the below-ground and the above-ground parts, resulting in reduced plant performance. Plants have developed a multi-component defence mechanism against diverse pathogens, including PPNs. Several natural molecules, ranging from cell wall components to secondary metabolites, have been found to protect plants from PPN attack by conferring nematode-specific resistance. Recent advances in omics analytical tools have encouraged researchers to shed light on nematode detection and the biochemical defence mechanisms of plants during nematode infection. Here, we discuss the recent progress on revealing the nematode-associated molecular patterns (NAMPs) and their receptors in plants. The biochemical defence responses of plants, comprising cell wall reinforcement; reactive oxygen species burst; receptor-like cytoplasmic kinases; mitogen-activated protein kinases; antioxidant activities; phytohormone biosynthesis and signalling; transcription factor activation; and the production of anti-PPN phytochemicals are also described. Finally, we also examine the role of epigenetics in regulating the transcriptional response to nematode attack. Understanding the plant defence mechanism against PPN attack is of paramount importance in developing new, effective and sustainable control strategies. Full article
(This article belongs to the Special Issue Biochemical Defenses of Plants)
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<p>Plant-parasitic nematodes release pheromones that act as nematode-associated molecular patterns that can be detected by plants, such as Arabidopsis, activating defence mechanisms. The receptor-like kinase NEMATODE-INDUCED LRR-RLK1 (NILR1), located in the plasma membrane of Arabidopsis, detects the nematode-released pheromone ascaroside #18 (asc#18). Consequently, the kinase-active cytoplasmic region of NILR1 interacts with its co-receptor BAK1 and phosphorylates each other. When BAK1 is activated, it interacts with and phosphorylates BIK1, which then phosphorylates the plasma membrane-localised RBOHD/F enzymes, leading to a burst of reactive oxygen species (ROS) in the cytoplasm and apoplast. RBOHD/F-aided ROS generation, causing defence activation, also occurs when root-knot nematodes migrate in the root system. The role of ROS becomes more intricate when root tissues are damaged due to cyst nematode infection. More details can be found in a recent review [<a href="#B36-plants-13-02813" class="html-bibr">36</a>]. Upon asc#18 detection, mitogen-activated protein kinase 3 (MPK3/6) functions downstream of BIK1, but MAPK cascades that link BIK1 and MPK3/6 are less understood. Plant epigenetics events play a major role in the plant–nematode interaction. DNA methylation is decreased by the plant but increased by the nematode. Small interference RNA (siRNA) expression is heavily increased in the plant upon nematode infection. siRNAs could lead to DNA methylation or could be the result of the demethylation of transposable elements. The expression of microRNAs (miRNAs) is likely misused by the nematode to inhibit transcription factors (TFs) involved in defence activation and promote the formation of nematode feeding sites. The Arrow is a positive relation, and the perpendicular line is a negative relation. Blue line: expected plant response; black line: expected nematode response; grey line: unrevealed response. APX, ascorbate peroxidase; BAK1, BRASSINOSTEROID-INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1; BIK1, BOTRYTIS-INDUCED KINASE1; CAT, catalase; P, phosphorylation. This illustration was created with <a href="http://www.BioRender.com" target="_blank">www.BioRender.com</a> accessed on August 2024.</p>
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<p>Chemical structure of metabolites. Both glycine betaine (<b>A</b>) and glutathione (<b>B</b>) are non-enzymatic antioxidants that could be produced in plants in response to nematode infection.</p>
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<p>Chemical structure of monoterpenoids: carvone (<b>a</b>), cuminaldehyde (<b>b</b>) and α-Terpinene (<b>c</b>), which have strong nematicidal activity.</p>
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<p>Chemical structure of benzaldehyde (<b>a</b>), salicylaldehyde (<b>b</b>), 3-hydroxybenzaldehyde (<b>c</b>), 4-hydroxybenzaldehyde (<b>d</b>), 2,3-dihydroxybenzoic acid (<b>e</b>), 3,4-dihydroxybenzoic acid (<b>f</b>) and 3,5-dihydroxybenzoic acid (<b>g</b>), which showed toxicity to plant parasitic nematodes.</p>
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14 pages, 4453 KiB  
Article
Analysis of Mycorrhization Trends and Undesired Fungi Species in Three- and Six-Year-Old Tuber aestivum Plantations in Hungary
by Akale Assamere Habtemariam, Péter Cseh, Balázs Péter, Ádám Heller, Peter Pitlik, Sára Brandt, Péter László and Zoltán Bratek
J. Fungi 2024, 10(10), 696; https://doi.org/10.3390/jof10100696 - 7 Oct 2024
Viewed by 434
Abstract
Tuber aestivum is a key truffle species with significant ecological and economic value. Despite its importance, plantation success can be influenced by soil pH, host plants, and undesired fungi. This study examines how soil pH and host plants influence mycorrhization trends in T. [...] Read more.
Tuber aestivum is a key truffle species with significant ecological and economic value. Despite its importance, plantation success can be influenced by soil pH, host plants, and undesired fungi. This study examines how soil pH and host plants influence mycorrhization trends in T. aestivum plantations across six plant species in eight Hungarian settlements, using root sampling and DNA analysis to assess plantations at three and six years of age. Tuber aestivum achieved over 30% mycorrhization, with Carpinus betulus showing the highest levels. DNA analysis identified eight undesired mycorrhizal fungi, with Suillus spp. (42.9%) and Scleroderma spp. (31.4%) being the most prevalent. The study found that T. aestivum preferred a soil pH of around 7.6, while undesired fungi thrived in slightly acidic conditions. Additionally, soil pH significantly and positively influenced T. aestivum mycorrhization; however, factors such as plantation age also contributed to mycorrhization trends. While mycorrhization by undesired fungi decreased with higher soil pH, it increased as plantations matured from three to six years. These findings highlight the need for the effective management of soil pH and the control of undesired fungi to optimize T. aestivum mycorrhization, emphasizing the importance of targeted strategies and further research for sustainable truffle cultivation. Full article
(This article belongs to the Special Issue New Perspectives on Tuber Fungi)
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<p>The distribution and locations of eight truffle plantation settlements across Hungary.</p>
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<p>The levels of (<b>a</b>) <span class="html-italic">Tuber aestivum</span> mycorrhization and (<b>b</b>) contamination in six plant species from three-year-old plantations. Means that do not share the same letter are statistically significantly different from each other.</p>
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<p>The levels of (<b>a</b>) <span class="html-italic">T. aestivum</span> and (<b>b</b>) undesired mycorrhizations across 12 plantations.</p>
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<p>The levels of (<b>a</b>) <span class="html-italic">Tuber aestivum</span> mycorrhization and (<b>b</b>) undesired fungi across four plant species in three- and six-year-old plantations. Means that do not share a letter are significantly different.</p>
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<p>The levels of <span class="html-italic">T. aestivum</span> and undesired mycorrhization in different three- and six-year-old plantations.</p>
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<p>A scatter plot combined with a linear regression model illustrating the relationship between <span class="html-italic">T. aestivum</span> mycorrhization levels and soil pH in three- and six-year-old plantations.</p>
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<p>Scatter plots showing the mycorrhization levels of undesired fungi in <span class="html-italic">T. aestivum</span> plantations and their relationship with soil pH in three- and six-year-old plantations.</p>
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<p>Rooted maximum likelihood phylogenetic tree illustrating evolutionary relationships among ectomycorrhizal fungal lineages identified in this study using IQ-TREE. Significant bootstrap support (&gt;81) is as indicated above branches and bold letters denote sequences in this study.</p>
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<p>The frequency of morphologically identified ectomycorrhizal fruiting bodies in plantations.</p>
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24 pages, 3953 KiB  
Article
Quantifying Climate Change Variability for the Better Management of Water Resources: The Case of Kobo Valley, Danakil Basin, Ethiopia
by Mengesha Tesfaw, Mekete Dessie, Kristine Walraevens, Thomas Hermans, Fenta Nigate, Tewodros Assefa and Kasye Shitu
Climate 2024, 12(10), 159; https://doi.org/10.3390/cli12100159 - 6 Oct 2024
Viewed by 773
Abstract
Alterations in the hydrological cycle due to climate change are one of the key threats to the future accessibility of natural resources. This study used 12 GCM climate models from CMIP6 to evaluate future climate change scenarios by applying model performance measures and [...] Read more.
Alterations in the hydrological cycle due to climate change are one of the key threats to the future accessibility of natural resources. This study used 12 GCM climate models from CMIP6 to evaluate future climate change scenarios by applying model performance measures and trend analysis in Kobo Valley, Ethiopia. The models were ranked based on their ability to analyze the historical datasets. The result of this study showed that the outputs of the FIO-ESM-2-0 CIMP6 model had a good overall ranking for both precipitation and temperature. After bias correction of the model-based projections with the observed data, the average annual precipitation in the average scenario (SSP2-4.5) decreased by 4.4% and 13% in 2054 and 2084, respectively. Similarly, in the worst-case scenario (SSP5-8.5), by the end of 2054 and 2084, decreases of 4% and 12.8%, respectively, were predicted. The average annual maximum temperature under the SSP2-4.5 scenario increased by 1.5 °C in 2054 and by 2.1 °C in 2084. The average annual maximum temperature under the worst-case (SSP5-8.5) scenario increased by 1.7 °C in 2054 and by 3.2 °C in 2084. In the middle scenario (SSP4.5), the average annual minimum temperature increased by 2.2 °C in 2054 and by 3 °C in 2084. The average annual minimum temperature under the worst-case (SSP5-8.5) scenario increased by 2.6 °C in 2054 and by 4.3 °C in 2084. The seasonal variability in precipitation in the studied valley will decrease in the winter and increase in the summer. A decrease in precipitation combined with an increase in temperature will strengthen the risk of drought events in the future. Full article
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<p>Location map of Kobo Valley.</p>
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<p>Comparison between observed, satellite, and reanalysis products for precipitation (in mm).</p>
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<p>Comparison between the observed and reanalysis products for temperature (°C).</p>
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<p>Comparison between the observed and reanalysis products for temperature (°C).</p>
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<p>Comparison between the observed and reanalysis products for temperature (°C).</p>
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<p>Comparison between the observed and reanalysis products for PET (in mm).</p>
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<p>Comparison between the observed and reanalysis products for PET (in mm).</p>
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<p>Spatial distribution of climate variables in Kobo Valley.</p>
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<p>Spatial distribution of climate variables in Kobo Valley.</p>
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<p>Projected precipitation under middle and worst-case scenarios.</p>
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<p>Projected maximum temperature under the middle and worst-case scenarios.</p>
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<p>Projected minimum temperature under the middle and worst-case scenarios.</p>
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<p>Projected minimum temperature under the middle and worst-case scenarios.</p>
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<p>Projected PET under the middle and worst-case scenarios.</p>
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<p>Projected PET under the middle and worst-case scenarios.</p>
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