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36 pages, 29976 KiB  
Article
Continuity, Resilience, and Change in Rural Settlement Patterns from the Roman to Islamic Period in the Sicani Mountains (Central-Western Sicily)
by Angelo Castrorao Barba, Carla Aleo Nero, Giuseppina Battaglia, Luca Zambito, Ludovica Virga, Alessandra Messina, Marco Cangemi and Giuseppe Bazan
Land 2024, 13(3), 400; https://doi.org/10.3390/land13030400 - 21 Mar 2024
Cited by 2 | Viewed by 2115
Abstract
This study aims to analyze the dynamics of change in settlement models from the Roman, late antique, and Byzantine periods, focusing on how these transformations influenced the formation of Islamic societies in the rural landscapes of western Sicily. The study is centered around [...] Read more.
This study aims to analyze the dynamics of change in settlement models from the Roman, late antique, and Byzantine periods, focusing on how these transformations influenced the formation of Islamic societies in the rural landscapes of western Sicily. The study is centered around the territory of Corleone in the Sicani Mountains (central-western Sicily). This region, strategically located between the significant cities of Palermo on the Tyrrhenian Sea and Agrigento on the Strait of Sicily, has been pivotal in the communication network spanning from the Roman era to the Middle Ages and beyond. The area has been subject to extensive surveys and excavations, revealing diverse dynamics of continuity, resilience, and innovation in settlement patterns from the Roman to the Islamic periods. Beyond presenting the results of archaeological fieldwork, this study employs GIS-based spatial and statistical analyses and utilizes a range of topographic (elevation, slope, aspect, topographic position index (TPI), and distance to water sources) and ecological factors (vegetation series). These analyses aim to assess the evolving relationships and site positioning within the territory over time. Combining archaeological data with topographic and ecological landscape analysis, this integrated approach elucidates the complex transition dynamics from the Roman settlement system to the Islamic age’s landscape formation in western Sicily’s rural areas. The study thereby contributes to a deeper understanding of the intricate interplay between historical developments and environmental factors in shaping rural settlement patterns. Full article
(This article belongs to the Special Issue Resilience in Historical Landscapes)
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Figure 1
<p>Location of the study area and topographic map from the Italian Geographic Military Institute [<a href="#B57-land-13-00400" class="html-bibr">57</a>] and sites relevant for settlement dynamics across the ages: Roman (blue); Byzantine (green); Byzantine–Islamic (red); Islamic (purple).</p>
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<p>The right peak of the southwest side of Montagna Vecchia, where the medieval settlement was located.</p>
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<p>Map of the density of ceramic fragments per m<sup>2</sup> in the two topographic units (UT1 and UT2) identified in the Contrada Zuccarone site (CRL29).</p>
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<p>Hellenistic and Roman pottery from the Contrada Zuccarone site (CRL29_UT1). 10A, N.I. 66: worn rims referable due to their texture (numerous volcanic inclusions of Tyrrhenian origin) and typology to MGS amphorae and probably dating back to between the 4th and 3rd centuries BCE [<a href="#B79-land-13-00400" class="html-bibr">79</a>]. 13B, N.I. 94: fragment of an African Red Slip A cup, Hayes 8B form, with an undecorated strip (2nd century CE) [<a href="#B80-land-13-00400" class="html-bibr">80</a>]. 6A, N.I. 48: a fragment of rim of plate lid with cinerish patina of Hayes 196 form/Bonifay types 11.5 (2nd–5th century) [<a href="#B80-land-13-00400" class="html-bibr">80</a>,<a href="#B81-land-13-00400" class="html-bibr">81</a>]. 12B, N.I. 88: almond-shaped rim and vertical body of a North African cooking pot (casserole) related to the Hayes 197 form (4th–5th century) [<a href="#B80-land-13-00400" class="html-bibr">80</a>]. 8A, N.I. 56: a fragment of the rim of a cooking pan of Pantellerian ware (4th–5th century) [<a href="#B82-land-13-00400" class="html-bibr">82</a>,<a href="#B83-land-13-00400" class="html-bibr">83</a>]. 15B, N.I. 108: a fragment of a rim of an African Red Slip D cup with “nailed” decoration on the external body of a Hayes 81 A/Bonifay type 43–44 form (half/second half of 5th century) [<a href="#B80-land-13-00400" class="html-bibr">80</a>,<a href="#B81-land-13-00400" class="html-bibr">81</a>]. 3A, N.I. 26: a fragment of a rim of Hayes 81A/Bonifay type 43–44 form (half/second half of 5th century) [<a href="#B80-land-13-00400" class="html-bibr">80</a>,<a href="#B81-land-13-00400" class="html-bibr">81</a>].</p>
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<p>Islamic pottery from the Contrada Zuccarone site (CRL29_UT2). N.I. 292–295: painted amphorae/jugs. N.I. 297: Islamic glazed pottery.</p>
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<p>(<b>a</b>) Topographic units identified in the Case Scalilli–Gole del Drago site (CRL23); (<b>b</b>) the rocky plateau at the top of the isolated relief at the Case Scalilli–Gole del Drago site.</p>
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<p>Roman pottery from the Case Scalilli–Gole del Drago site (CRL23). UT7, N.I. 136: a small cup in <span class="html-italic">terra sigillata</span>, approximately 15 BCE—50 CE [<a href="#B92-land-13-00400" class="html-bibr">92</a>]. UT7, N.I. 132: a cup in African red slip A with everted rim and subhorizontal brim, Hayes 32 form [<a href="#B80-land-13-00400" class="html-bibr">80</a>] (1st–2nd century CE). UT7, N.I. 167: a bowl in African Red Slip F [<a href="#B93-land-13-00400" class="html-bibr">93</a>] with an indistinct rim and vertical body may be similar to Hayes 50 (mid-5th century CE) [<a href="#B80-land-13-00400" class="html-bibr">80</a>]. UT7, N.I. 124: an amphora Africana IIIA (4th century) [<a href="#B56-land-13-00400" class="html-bibr">56</a>].</p>
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<p>Shards of Medieval pottery from the Case Scalilli–Gole del Drago site (CRL23). UT 14, N.I. 187; UT 15, N.I. 188; UT 15, N.I. 288: glazed pottery. UT 15, N.I. 291; UT 14, N.I. 286; UT 14, N.I. 287; UT 15, N.I. 290: painted amphorae/jugs. UT 15, N.I., 289: lamp. UT 14, N.I. 185; and UT 14, N.I. 186: glazed pottery with furrowed decoration.</p>
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<p>Earrings (<b>a</b>,<b>b</b>) and painted ceramic jugs (<b>c</b>,<b>d</b>) from grave goods of the Byzantine period (6th–7th century) from the Palastanga area in the Corleone area (reworked from Dannheimer [<a href="#B97-land-13-00400" class="html-bibr">97</a>] to Metaxas [<a href="#B98-land-13-00400" class="html-bibr">98</a>]).</p>
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<p>Byzantine striped/combed tiles from the Costa Rubina (CRL40), Contrada Casale (CRL44), and Case Bingo (CRL47) sites.</p>
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<p>(<b>a</b>) Topographic location of the sites of Casale di Sotto (CRL3) and Casale di Sopra (CRL4); (<b>b</b>) map of the fortification line of Casale di Sopra; (<b>c</b>) the fortification wall of Casale di Sopra; (<b>d</b>) topographic units of concentration of pottery inside the wall of Casale di Sopra.</p>
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<p>Islamic amphoras from Casale di Sopra (CRL4). UT 2, N.I. 281: painted amphora. UT 1, N.I. 2; UT 2, N.I. 239–240; UT 4 N.I. 242; and UT 5, N.I. 244: amphoras.</p>
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<p>Medieval glazed pottery from Casale di Sopra (CRL4): UT 3, N.I. 243; UT 3, and N.I. 241.</p>
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<p>Shards of Islamic painted amphoras and cooking pots from the Masseria Magione (CRL7) and Contrada Carrubba (CRL49) sites. CRL 7, N.I. 282; CRL 7, N.I. 283; CRL 7, N.I. 284; CRL 49, N.I. 261; and CRL 49, N.I. 262: painted amphorae/jugs. CRL 7, N.I. 194: amphora. CRL 7, N.I. 192: cooking pot.</p>
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<p>Maps of GIS-based spatial analyses of key environmental variables: (<b>a</b>) elevation [m], (<b>b</b>) slope (°), (<b>c</b>) aspect (°), (<b>d</b>) TPI, (<b>e</b>) water distance [m], and (<b>f</b>) vegetation series. Red circles are archaeological sites.</p>
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<p>Boxplots representing the distribution of key environmental variables across different periods at archaeological sites. Each plot corresponds to a unique variable: (<b>a</b>) elevation [m], (<b>b</b>) slope (°), (<b>c</b>) aspect (°), (<b>d</b>) TPI, and (<b>e</b>) water distance [m]. The boxplots are categorized by the Roman (1), Byzantine (2), and Islamic (3) periods and illustrate the range, interquartile range, median, and potential outliers within each period.</p>
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<p>PCA biplot depicting the distribution of archaeological sites categorized by period. Each point represents a site positioned according to the first two principal components (PC1 and PC2) derived from environmental variables. The red arrows indicate the direction and strength of the variables’ association with the principal components. Sites are visually distinguished by period: Roman (1), Byzantine (2), and Islamic (3).</p>
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<p>Frequency of surface assigned to a different vegetation series in the surrounding area of each archaeological site.</p>
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13 pages, 1514 KiB  
Article
Citral-Enriched Fraction of Lemon Essential Oil Mitigates LPS-Induced Hepatocyte Injuries
by Roberta Gasparro, Marzia Pucci, Elisa Costanzo, Ornella Urzì, Vincenza Tinnirello, Marta Moschetti, Alice Conigliaro, Stefania Raimondo, Valeria Corleone, Simona Fontana and Riccardo Alessandro
Biology 2023, 12(12), 1535; https://doi.org/10.3390/biology12121535 - 17 Dec 2023
Cited by 1 | Viewed by 1733
Abstract
Lemon essential oil (LEO) is known for its aromatic and healthy properties; however, less consideration is given to the biological properties of the fractions obtained from LEO. This study aims to evaluate the ability of a citral-enriched fraction obtained from LEO (Cfr-LEO) to [...] Read more.
Lemon essential oil (LEO) is known for its aromatic and healthy properties; however, less consideration is given to the biological properties of the fractions obtained from LEO. This study aims to evaluate the ability of a citral-enriched fraction obtained from LEO (Cfr-LEO) to counteract lipopolysaccharide (LPS)-mediated inflammation, oxidative stress, and epithelial–mesenchymal transition (EMT) in healthy human hepatocytes. Human immortalized hepatocytes (THLE-2 cell line) were pretreated with Cfr-LEO and subsequently exposed to LPS at various time points. We report that the pretreatment with Cfr-LEO counteracts LPS-mediated effects by inhibiting inflammation, oxidative stress, and epithelial–mesenchymal transition in THLE-2. In particular, we found that pretreatment with Cfr-LEO reduced NF-κB activation and the subsequent proinflammatory cytokines release, ROS production, and NRF2 and p53 expression. Furthermore, the pretreatment with Cfr-LEO showed its beneficial effect in counteracting LPS-induced EMT. Taken together, these results support Cfr-LEO application in the nutraceutical research field not only for its organoleptic properties, conferred by citral enrichment, but also for its biological activity. Our study could lay the basis for the development of foods/drinks enriched with Cfr-LEO, aimed at preventing or alleviating chronic conditions associated with liver dysfunction. Full article
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<p>Graphical representation of the experimental design.</p>
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<p>(<b>A</b>) Hepatocyte cell viability after exposure to Cfr-LEO. THLE-2 viability was measured with MTT assay after 24 and 48 h of treatment with different concentrations of Cfr-LEO (0.005%, 0.01%, 0.02%, and 0.05%). The values were plotted as the percentage of cell viability versus untreated cells (CN). Values are the mean ± SD of two biological replicates. (<b>B</b>,<b>C</b>) Anti-inflammatory effects of Cfr-LEO on LPS-stimulated THLE-2. (<b>B</b>) The effect of Cfr-LEO on inflammatory cytokines expression was assessed with qRT-PCR analysis. THLE-2 cells were treated for 2 h with 0.01% and 0.02% Cfr-LEO and then exposed to LPS 100 ng/mL for 6 h. Values are reported as fold change versus cells treated with LPS alone and are the mean ± SD of three biological replicates. (<b>C</b>) IL-6 protein level was measured with ELISA in the conditioned medium of THLE-2 cells treated for 2 h with 0.01% Cfr-LEO and then exposed to LPS 100 ng/mL for 6 h. Values are plotted as fold change versus cells treated with LPS alone (LPS). Values are the mean ± SD of three biological replicates. The statistical significance was calculated versus the LPS-treated cells (LPS) by using Student’s <span class="html-italic">t</span>-test. (<b>D</b>,<b>E</b>) Effects of the Cfr-LEO pretreatment on the LPS-induced NF-κB activation. (<b>D</b>) Western blot showing the level of phosphorylated p65 subunit of NF-κB (p-NF-κB p65) and total p65 subunit of NF-κB (NF-κB p65) in THLE-2 cells treated for 30 min with 100 ng/mL LPS alone (LPS 100 ng/mL) or pretreated for 2 h with 0.01% Cfr-LEO (pre Cfr-LEO 0.01% + LPS 100 ng/mL). GAPDH was used as the loading control. CN: untreated cells used as control. The values reported in the densitometric analysis are the mean (±SD) of the analyzed protein normalized vs. loading control from at least two independent experiments. (<b>E</b>) Representative micrographs from confocal fluorescence microscopy of THLE-2 cells treated for 30 min with 100 ng/mL LPS alone (LPS 100 ng/mL) or pretreated for 2 h with 0.01% Cfr-LEO (pre Cfr-LEO 0.01% + LPS 100 ng/mL). THLE-2 cells were stained for NF-κB (red) and were labeled with Hoechst to observe the nucleus (blue) and with Actin Green for the cytoskeleton (green). CN: untreated cells used as control. The values reported in the densitometric analysis are the mean (±SD) of the analyzed micrographs from at least two observations. Colored dots represent the number of replicates for each condition. ns = not significant, * <span class="html-italic">p</span> ≤ 0.05, ** <span class="html-italic">p</span> ≤ 0.01, and *** <span class="html-italic">p</span> ≤ 0.001.</p>
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<p>Antioxidant effects of Cfr-LEO on LPS-stimulated THLE-2. (<b>A</b>) The antioxidant effects of Cfr-LEO were evaluated with a DCFDA—Cellular ROS assay kit probe. The hepatocytes were treated for 6 h with 100 ng/mL LPS alone (LPS) or pretreated for 2 h with 0.01% Cfr-LEO (pre Cfr-LEO 0.01% + LPS 100 ng/mL). The intensity of the green fluorescence is proportional to the amount of ROS present in the sample. Values of mean fluorescence intensity reported in the histogram were obtained by analyzing images with the Image J software and are the mean ± SD of three independent experiments. Values are plotted as fold change versus cells treated with LPS alone (LPS 100 ng/mL). Nuclei were labeled with Hoechst (blue). (<b>B</b>,<b>C</b>) Western blot analysis of NRF2 and p53 treated for 6 h with 100 ng/mL LPS alone (LPS 100 ng/mL) or pretreated for 2 h with 0.01% Cfr-LEO (pre Cfr-LEO 0.01% + LPS 100 ng/mL). GAPDH was used as the loading control. The values reported in the densitometric analysis are the mean (±SD) of the analyzed protein normalized vs. loading control from at least three independent experiments. CN: untreated cells used as control. Colored dots represent the number of replicates for each condition. ns = not significant * <span class="html-italic">p</span> ≤ 0.05 and ** <span class="html-italic">p</span> ≤ 0.01.</p>
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<p>Analysis of the EMT inhibition properties of Cfr-LEO. (<b>A</b>,<b>B</b>) Western blot analysis of N-cadherin and vimentin in THLE-2 pretreated with Cfr-LEO (0.02%) and treated with LPS (1000 ng/mL) for 24 h. β-actin and GAPDH were used as the loading controls. The values reported in the densitometric analysis are the mean (±SD) of the analyzed protein normalized vs. loading control from at least three independent experiments. CN: untreated cells used as control. Colored dots represent the number of replicates for each condition. * <span class="html-italic">p</span> ≤ 0.05.</p>
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11 pages, 642 KiB  
Article
Efficacy and Safety of Intravenous Ferric Carboxymaltose Treatment of Iron Deficiency Anaemia in Patients with Corpus Atrophic Gastritis: A Retrospective Study
by Ludovica Dottori, Daniil Corleone Tsar'kov, Emanuele Dilaghi, Giulia Pivetta, Silvia Scalamonti, Irene Ligato, Gianluca Esposito, Bruno Annibale and Edith Lahner
Nutrients 2023, 15(19), 4199; https://doi.org/10.3390/nu15194199 - 28 Sep 2023
Cited by 2 | Viewed by 1851
Abstract
Corpus Atrophic Gastritis (CAG) is characterised by iron malabsorption leading to iron deficiency anaemia (IDA), which rarely responds to oral therapy. Ferric carboxymaltose (FCM), shown to be a safe and effective intravenous iron therapy in other diseases, has not been investigated yet in [...] Read more.
Corpus Atrophic Gastritis (CAG) is characterised by iron malabsorption leading to iron deficiency anaemia (IDA), which rarely responds to oral therapy. Ferric carboxymaltose (FCM), shown to be a safe and effective intravenous iron therapy in other diseases, has not been investigated yet in CAG. Thus, we aimed to assess the safety and efficacy of FCM in CAG-related IDA. A retrospective study on 91 patients identified CAG as the only cause of IDA treated with FCM. Twenty-three were excluded for incomplete follow-up. Sixty-eight were evaluated for safety and efficacy, while three were evaluated for safety only due to infusion interruption for side effects. Haemoglobin and iron storage were evaluated pre-infusion (T0), at 4 weeks (T4) and 12 weeks (T12) after infusion. An eventual IDA relapse was analysed. Two cases reported mild side effects. Haemoglobin significantly increased at T4, and T12, reaching +3.1 g/dL. Ferritin increased at T4, decreasing at T12, while transferrin saturation increased progressively until reaching a plateau. IDA relapsed in 55.4% of patients at a mean of 24.6 months. The only factor associated with relapse was female gender [OR (95% CI): 6.6 (1.5–28.6)]. FCM proved to be safe and effective in treating CAG-related IDA, ensuring quick and long-lasting recovery. Full article
(This article belongs to the Section Micronutrients and Human Health)
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<p>Flow chart.</p>
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<p>(<b>A</b>) Haemoglobin levels (g/dL) at baseline (T0) and at 4 weeks (T4) and 12 weeks (T12) after treatment; (<b>B</b>) ferritin levels (ng/mL) at baseline (T0) and at 4 weeks (T4) and 12 weeks (T12) after treatment; and (<b>C</b>) transferrin saturation level (%) at baseline (T0) and at 4 weeks (T4) and 12 weeks (T12) after treatment.</p>
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19 pages, 6046 KiB  
Article
Roadmapping the Transition to Water Resource Recovery Facilities: The Two Demonstration Case Studies of Corleone and Marineo (Italy)
by Giorgio Mannina, Luigi Badalucco, Lorenzo Barbara, Alida Cosenza, Daniele Di Trapani, Vito Armando Laudicina, Sofia Maria Muscarella and Dario Presti
Water 2022, 14(2), 156; https://doi.org/10.3390/w14020156 - 7 Jan 2022
Cited by 14 | Viewed by 2359
Abstract
The current exploitation of freshwater, as well as the significant increase in sewage sludge production from wastewater treatment plants (WWTPs), represent nowadays a critical issue for the implementation of sustainable development consistent with the circular economy concept. There is an urgent need to [...] Read more.
The current exploitation of freshwater, as well as the significant increase in sewage sludge production from wastewater treatment plants (WWTPs), represent nowadays a critical issue for the implementation of sustainable development consistent with the circular economy concept. There is an urgent need to rethink the concept of WWTPs from the conventional approach consisting in pollutant removal plants to water resource recovery facilities (WRRFs). The aim of this paper is to provide an overview of the demonstration case studies at the Marineo and Corleone WRRFs in Sicily (IT), with the final aim showing the effectiveness of the resources recovery systems, as well as the importance of plant optimization to reduce greenhouse gas (GHG) emissions from WRRFs. This study is part of the H2020 European Project “Achieving wider uptake of water-smart solutions—Wider-Uptake”, which final aim is to demonstrate the water-smart solution feasibility in the wastewater sector. The main project goal is to overcome the existing barriers that hamper the transition to circularity through the implementation of a governance analysis tool. The preliminary actions in the two demonstration cases are first presented, while, subsequently, the water-smart solutions to be implemented are thoroughly described, highlighting their roles in the transition process. The achieved preliminary results underlined the significant potential of WRRF application, a great chance to demonstrate the feasibility of innovative solutions in the wastewater sector to overcome the existing social, administrative and technical barriers. Full article
(This article belongs to the Section Wastewater Treatment and Reuse)
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<p>Panoramic view of the Corleone (<b>a</b>) and Marineo (<b>b</b>) WWTPs (source <a href="https://earth.google.com/web/" target="_blank">https://earth.google.com/web/</a> accessed on 20 July 2020).</p>
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<p>CAS-OSA full-scale plant configuration.</p>
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<p>Modified orthophoto of the combined basin under study (<b>a</b>), particularly of the Wider-Uptake Shed (<b>b</b>), and the deviation lines for nutrient adsorption (<b>c</b>) and PHA production (<b>d</b>).</p>
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<p>PHA pilot plant configuration. (<b>a</b>) Sequencing batch fermentation reactor (F-SBR), (<b>b</b>) Ultrafiltration membrane, (<b>c</b>) selection sequencing batch reactor (S-SBR) and (<b>d</b>) accumulation sequencing batch reactor (A-SBR).</p>
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<p>Nutrient recovery plant operating scheme.</p>
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<p>Schematic representation of the Marineo WWTP.</p>
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<p>Schematic representation of the Corleone WWTP.</p>
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<p>General flow chart for the governance assessment. Relationship between the various levels, key points and existing barriers.</p>
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<p>Influent and effluent COD concentration for the Corleone (<b>a</b>) and Marineo (<b>b</b>) WWTPs during the years 2015–2020.</p>
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<p>The trend of influent (IN, <a href="#sec1-water-14-00156" class="html-sec">Section 1</a>) and effluent (out, <a href="#sec3-water-14-00156" class="html-sec">Section 3</a>) measured the COD, removal efficiency (EtaCOD) and legislative limit (<b>a</b>); the trend of influent (IN) and effluent (out) measured the TSS and legislative limit (<b>b</b>) and measured the mixed liquor (<a href="#sec2-water-14-00156" class="html-sec">Section 2</a>) TSS (ML_TSS) and VSS (ML_VSS) (<b>c</b>) Corleone WWTP.</p>
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<p>The trend of influent (IN, <a href="#sec1-water-14-00156" class="html-sec">Section 1</a>) and effluent (out, <a href="#sec3-water-14-00156" class="html-sec">Section 3</a>) measured the COD, removal efficiency (EtaCOD) and legislative limit (<b>a</b>); the trend of influent (IN) and effluent (out) measured the TSS and legislative limit (<b>b</b>) and measured the mixed liquor (<a href="#sec2-water-14-00156" class="html-sec">Section 2</a>) TSS (ML_TSS) and VSS (ML_VSS) (<b>c</b>) Marineo WWTP.</p>
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<p>Settling velocity curve (<b>a</b>) and STA application results (<b>b</b>) for Corleone WWTP, and settling velocity curve (<b>c</b>) and STA application results (<b>d</b>) for Marineo WWTP.</p>
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<p>Amount of NH<sub>4</sub><sup>+</sup> adsorbed, released and retained by the different treatments (<b>a</b>). Percentage of ammonium recovered from the ammonium solution (process efficiency) compared to the ammonium exchange capacity of treated clinoptilolite (<b>b</b>).</p>
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<p>Suspended solids concentrations in the monitored period.</p>
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22 pages, 2536 KiB  
Article
Food and Religion in Sicily—A New Green Tourist Destination by an Ancient Route from the Past
by Claudio Bellia, Valeria Scavone and Marzia Ingrassia
Sustainability 2021, 13(12), 6686; https://doi.org/10.3390/su13126686 - 12 Jun 2021
Cited by 19 | Viewed by 3636
Abstract
The Francigena Way (Via Francigena) is a long international itinerary that was awarded recognition as a Culture Route of the Council of Europe. It starts in Canterbury (UK), touches 13 European regions and ends in Rome. An ancient track of this [...] Read more.
The Francigena Way (Via Francigena) is a long international itinerary that was awarded recognition as a Culture Route of the Council of Europe. It starts in Canterbury (UK), touches 13 European regions and ends in Rome. An ancient track of this route is in Sicily (Southern Italy), and its name is Magna Via Francigena (Great Francigena Way). This track is a pilgrimage route that connects two ancient port cities, Palermo and Agrigento, passing through internal rural territories that now deal with the exodus of population from rural to urban areas. The route passes through the Sicilian territory named “Upper-Belìce corleonese”, a rural area around the city of Corleone (a little village known worldwide for the sad Mafia events) that includes a number of municipalities. In the past, this religious pilgrimage was a fundamental part of the expression of faith for Christians and now still represents for Sicilians a strong symbol of Christian identity. In recent decades, pilgrimage tourism around the world has grown significantly each year. The aim of the study is to know the pilgrims’ motivations for choosing the Magna Via Francigena pilgrimage as a vacation and any possible similarities between pilgrimage tourism and food and wine tourism, in the wider context of sustainable and slow tourism. The Policy Delphi method was applied to collect the opinions of the stakeholders involved. The study highlighted the strong link between religious motivations and local enogastronomy, culture, art and nature. Results will support policy-making in the development of integrated territorial tourist marketing strategies. Full article
(This article belongs to the Section Sustainable Agriculture)
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<p>Policy Delphi method adopted.</p>
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<p>Route of the <span class="html-italic">Magna Via Francigena</span> in Sicily (from Palermo to Agrigento). Source: <a href="http://www.viefrancigenedisicilia.it/" target="_blank">www.viefrancigenedisicilia.it/</a>.</p>
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<p>Percentage of appreciation of the relevant variables according to the stakeholders.</p>
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14 pages, 1055 KiB  
Article
Preliminary Results of CitraVes™ Effects on Low Density Lipoprotein Cholesterol and Waist Circumference in Healthy Subjects after 12 Weeks: A Pilot Open-Label Study
by Stefania Raimondo, Dragana Nikolic, Alice Conigliaro, Gianluca Giavaresi, Bruna Lo Sasso, Rosaria Vincenza Giglio, Roberta Chianetta, Mauro Manno, Samuele Raccosta, Valeria Corleone, Giovanni Ferrante, Roberto Citarrella, Manfredi Rizzo, Giacomo De Leo, Marcello Ciaccio, Giuseppe Montalto and Riccardo Alessandro
Metabolites 2021, 11(5), 276; https://doi.org/10.3390/metabo11050276 - 27 Apr 2021
Cited by 20 | Viewed by 3204
Abstract
Appropriate monitoring and control of modifiable risk factors, such as the level of low-density lipoprotein cholesterol (LDL-C) and other types of dyslipidemia, have an important role in the prevention of cardiovascular diseases (CVD). Recently, various nutraceuticals with lipid-lowering effects have gained attention. In [...] Read more.
Appropriate monitoring and control of modifiable risk factors, such as the level of low-density lipoprotein cholesterol (LDL-C) and other types of dyslipidemia, have an important role in the prevention of cardiovascular diseases (CVD). Recently, various nutraceuticals with lipid-lowering effects have gained attention. In addition to the plant-derived bioactive compounds, recent studies suggested that plant cells are able to release small lipoproteic structures named extracellular vesicles (EVs). The interaction between EVs and mammalian cells could lead to beneficial effects through anti-inflammatory and antioxidant activities. The present study aimed to assess the safety of the new patented plant-based product citraVes™, containing extracellular vesicles (EVs) from Citrus limon (L.) Osbeck juice, and to investigate its ability to modulate different CV risk factors in healthy subjects. A cohort of 20 healthy volunteers was recruited in a prospective open-label study. All participants received the supplement in a spray-dried formulation at a stable dose of 1000 mg/day for 3 months. Anthropometric and hematobiochemical parameters were analyzed at the baseline and after the follow-up period of 1 and 3 months. We observed that the supplement has an effect on two key factors of cardiometabolic risk in healthy subjects. A significant change in waist circumference was found in women after 4 (85.4 [79.9, 91.0] cm, p < 0.005) and 12 (85.0 [80.0, 90.0] cm, p < 0.0005) weeks, when compared to the baseline value (87.6 [81.7, 93.6] cm). No difference was found in men (baseline: 100.3 [95.4, 105.2] cm; 4 weeks: 102.0 [95.7, 108.3] cm; 12 weeks: 100.0 [95.3, 104.7] cm). The level of LDL-C was significantly lower at 12 weeks versus 4 weeks (p = 0.0064). Our study evaluated, for the first time, the effects of a natural product containing plant-derived EVs on modifiable risk factors in healthy volunteers. The results support the use of EV extracts to manage cardiometabolic risk factors successfully. Full article
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<p>(<b>A</b>) The chromatographic analyses of the compounds identified in the supplement. (<b>B</b>) Quantitative data of the compounds quantified in the supplement. (<b>C</b>) DLS analysis of vesicles contained in the supplement.</p>
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<p>Flowchart of the study enrollment process. Due to the slightly, although not clinically significant, increase in values of waist circumference, triglycerides levels, and blood pressure during the follow-up period, one screened subject was excluded from analyses.</p>
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11 pages, 561 KiB  
Article
Hepatic and Extrahepatic Colorectal Metastases Have Discordant Responses to Systemic Therapy. Pathology Data from Patients Undergoing Simultaneous Resection of Multiple Tumor Sites
by Luca Vigano, Pio Corleone, Shadya Sara Darwish, Nicolò Turri, Simone Famularo, Lorenzo Viggiani, Lorenza Rimassa, Daniele Del Fabbro, Luca Di Tommaso and Guido Torzilli
Cancers 2021, 13(3), 464; https://doi.org/10.3390/cancers13030464 - 26 Jan 2021
Cited by 7 | Viewed by 2158
Abstract
Background: Systemic therapy is the standard treatment for patients with hepatic and extrahepatic colorectal metastases. It is assumed to have the same effectiveness on all disease foci, independent of the involved organ. The present study aims to compare the response rates of hepatic [...] Read more.
Background: Systemic therapy is the standard treatment for patients with hepatic and extrahepatic colorectal metastases. It is assumed to have the same effectiveness on all disease foci, independent of the involved organ. The present study aims to compare the response rates of hepatic and extrahepatic metastases to systemic therapy. Methods: All consecutive patients undergoing simultaneous resection of hepatic and extrahepatic metastases from colorectal cancer after oxaliplatin- and/or irinotecan-based preoperative chemotherapy were analyzed. All specimens were reviewed. Pathological response to chemotherapy was classified according to tumor regression grade (TRG). Results: We analyzed 45 patients undergoing resection of 134 hepatic and 72 extrahepatic metastases. Lung and lymph node metastases had lower response rates to chemotherapy than liver metastases (TRG 4–5 95% and 100% vs. 67%, p = 0.008, and p = 0.006). Peritoneal metastases had a higher pathological response rate than liver metastases (TRG 1–3 66% vs. 33%, p < 0.001) and non-hepatic non-peritoneal metastases (3%, p < 0.001). Metastases site was an independent predictor of pathological response to systemic therapy. Conclusions: Response to chemotherapy of distant metastases from colorectal cancer varies in different organs. Systemic treatment is highly effective for peritoneal metastases, more so than liver metastases, while it has a very poor impact on lung and lymph node metastases. Full article
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<p>Per-lesion analysis of the pathological response to chemotherapy according to the metastasis site.</p>
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16 pages, 1636 KiB  
Article
Biological Properties of a Citral-Enriched Fraction of Citrus limon Essential Oil
by Marzia Pucci, Stefania Raimondo, Chiara Zichittella, Vincenza Tinnirello, Valeria Corleone, Gioacchino Aiello, Marta Moschetti, Alice Conigliaro, Simona Fontana and Riccardo Alessandro
Foods 2020, 9(9), 1290; https://doi.org/10.3390/foods9091290 - 14 Sep 2020
Cited by 18 | Viewed by 3454
Abstract
Lemon essential oil (LEO) is a well-known flavoring agent with versatile biological activities. In the present study, we have isolated and characterized four citral-enriched fractions of winter LEO. We reported that in murine and human macrophages the pre-treatment with a mix of these [...] Read more.
Lemon essential oil (LEO) is a well-known flavoring agent with versatile biological activities. In the present study, we have isolated and characterized four citral-enriched fractions of winter LEO. We reported that in murine and human macrophages the pre-treatment with a mix of these fractions (Cfr-LEO) reduces the expression of the pro-inflammatory cytokines TNF-α, IL-1β, and IL-6 induced by LPS. In addition, Cfr-LEO counteracts LPS-induced oxidative stress, as shown by the increase in the GSH/GSSG ratio in comparison to cells treated with LPS alone. Overall, the results reported here encourage the application of EO fractions, enriched in citral, in the nutraceutical industry, not only for its organoleptic properties but also for its protective action against inflammation and oxidative stress. Full article
(This article belongs to the Special Issue Chemistry of Essential Oils and Food Flavours)
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<p>Evaluation of macrophage cell viability after Cfr-LEO and LEO exposure. (<b>a</b>) RAW264.7 and (<b>b</b>) THP-1 M0 cell viability was measured by MTT assay after 24 and 48 h of treatment with different concentrations of Cfr-LEO (0.005%, 0.01%, 0.02%, 0.05%). The values were plotted as the percentage of cell viability versus untreated cells (cn). Values are the mean ± SD of two biological replicates, each carried out in technical quadruplicates. The statistical significance of the differences between two groups (cells treated with 0.05% of Cfr-LEO <span class="html-italic">Vs</span> cn) was analyzed using a two-tailed Student’s <span class="html-italic">t</span>-test. (<b>c</b>) RAW264.7 and (<b>d</b>) THP-1 M0 cell viability were measured by MTT assay after 24 and 48 h of treatment with different concentrations of LEO (0.005%, 0.01%, 0.02%, 0.05%). The values were plotted as the percentage of cell viability versus untreated cells (cn). Values are the mean ± SD of two biological replicates, each carried out in technical triplicates. The statistical significance of the differences between the two groups (cells treated with LEO <span class="html-italic">Vs</span> cn) was analyzed using a two-tailed Student’s <span class="html-italic">t</span>-test.</p>
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<p>Evaluation of murine macrophage cytotoxicity after Cfr-LEO and LEO exposure. (<b>a</b>) RAW264.7 cell cytotoxicity was measured by CellTox Green Cytotoxicity Assay after 24 and 48 h of treatment with different concentrations of Cfr-LEO (0.005%, 0.01%, 0.02%, 0.05%). Values are plotted as Relative Fluorescence Unit (RFU). Values are the mean ± SD of two biological replicates, each carried out in technical duplicates. The statistical significance of the differences between two groups (cells treated with 0.05% of Cfr-LEO <span class="html-italic">Vs</span> cn) was analyzed using a two-tailed Student’s <span class="html-italic">t</span>-test. (<b>b</b>) The effects of Cfr-LEO treatment (0.01%, 0.02%) on Bcl-2, Bax and Bad transcription were assessed by qRT-PCR. Data are represented as Bcl-2/Bax and Bcl-2/Bad ratio. Values are the mean ± SD of two biological replicates. (<b>c</b>) RAW264.7 cell cytotoxicity was measured by CellTox Green Cytotoxicity Assay after 24 and 48 h of treatment with different concentrations of LEO (0.005%, 0.01%, 0.02%, 0.05%). Values are plotted as Relative Fluorescence Unit (RFU). Values are the mean ± SD of two biological replicates, each carried out in technical triplicates. The statistical significance of the differences between two groups (cells treated with 0.05% LEO <span class="html-italic">Vs</span> cn) was analyzed using a two-tailed Student’s <span class="html-italic">t</span>-test. (<b>d</b>) The effects of LEO treatment (0.01%, 0.02%) on Bcl-2, Bax, and Bad transcription were assessed by qRT-PCR. Data are represented as Bcl-2/Bax (two biological replicates) and Bcl-2/Bad (three biological replicates) ratio.</p>
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<p>Evaluation of human macrophage cytotoxicity after Cfr-LEO and LEO exposure. (<b>a</b>) THP-1 M0 cell cytotoxicity was measured by CellTox Green Cytotoxicity Assay after 24 and 48 h of treatment with different concentrations of Cfr-LEO (0.005%, 0.01%, 0.02%, 0.05%). Values are plotted as the Relative Fluorescence Unit (RFU). Cn: untreated cells. Values are the mean ± SD of two biological replicates, each carried out in technical duplicates. (<b>b</b>) THP-1 M0 cell cytotoxicity was measured by CellTox Green Cytotoxicity Assay after 24 and 48 h of treatment with different concentrations of LEO (0.005%, 0.01%, 0.02%, 0.05%). Values are plotted as the Relative Fluorescence Unit (RFU). Cn: untreated cells. Values are the mean ± SD of two biological replicates, each carried out in technical triplicates.</p>
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<p>Anti-inflammatory effects of Cfr-LEO and LEO on LPS-activated macrophages. The anti-inflammatory effects of Cfr-LEO and LEO treatment on IL6, IL1b, and TNFα transcription levels were assessed by qRT-PCR analyses. (<b>a</b>) RAW264.7 cells were treated for 2 h with Cfr-LEO (0.005%, 0.01%, 0.02%) and then exposed to LPS for 6 h. Values are the mean ± SD of three biological replicates. (<b>b</b>) THP-1 M0 were treated for 2 h with Cfr-LEO (0.005%, 0.01%) and then exposed to LPS for 6 h. Values are reported as Fold change versus cells treated with LPS (dashed line). Values are the mean ± SD of three biological replicates for IL6 and TNFα of five biological replicates for IL1β. The statistical significance of the differences between two groups (cells treated with LPS <span class="html-italic">Vs</span> cells pre-treated with Cfr-LEO + LPS) was analyzed using a two-tailed Student’s <span class="html-italic">t</span>-test. (<b>c</b>) RAW264.7 cells were treated for 2 h with LEO (0.005%, 0.01%, 0.02%) and then exposed to LPS for 6 h. (<b>d</b>) THP-1 M0 were treated for 2 h with LEO (0.005%, 0.01%) and then exposed to LPS for 6 h. Values are reported as Fold change versus cells treated with LPS (dashed line). Values are the mean ± SD of three to six biological replicates The statistical significance of the differences between two groups (cell treated with LPS <span class="html-italic">Vs</span> cells pre-treated with LEO + LPS) was analyzed using a two-tailed Student’s <span class="html-italic">t</span>-test. (<b>e</b>) IL6 and TNFα protein levels were measured by ELISA in the conditioned medium of RAW264.7 cells treated for 2 h with Cfr-LEO (0.01%) and then exposed to LPS for 6 h. Values are plotted as Fold change versus cell treated with LPS. Values are the mean ± SD of three biological replicates. The statistical significance of the differences between the two groups (cells treated with LPS <span class="html-italic">Vs</span> cells pre-treated with Cfr-LEO + LPS) was analyzed using a one-tailed Student’s <span class="html-italic">t</span>-test.</p>
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<p>Anti-oxidant effect of Cfr-LEO. The anti-oxidant effects of Cfr-LEO treatment (0.005%, 0.01%) was evaluated by GSH/GSSG-Glo Assay. THP-1 M0 were treated for 2 h with Cfr-LEO (0.005%, 0.01%) and then exposed to LPS for 6 h. Values are expressed as the GSH/GSSG ratio, calculated as follows: GSH/GSSG ratio = (Net total glutathione RLU−Net GSSG RLU)/(Net GSSG RLU/2). Values are the mean ± SD of 2 independent experiments.</p>
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23 pages, 5666 KiB  
Article
Historical Suitability and Sustainability of Sicani Mountains Landscape (Western Sicily): An Integrated Approach of Phytosociology and Archaeobotany
by Giuseppe Bazan, Claudia Speciale, Angelo Castrorao Barba, Salvatore Cambria, Roberto Miccichè and Pasquale Marino
Sustainability 2020, 12(8), 3201; https://doi.org/10.3390/su12083201 - 15 Apr 2020
Cited by 19 | Viewed by 3970
Abstract
Since 2015, the ongoing project “Harvesting Memories” has been focused on long-term landscape dynamics in Sicani Mountains (Western Sicily). Archaeological excavations in the case study site of Contrada Castro (Corleone) have investigated a settlement which was mainly occupied during the Early Middle Ages [...] Read more.
Since 2015, the ongoing project “Harvesting Memories” has been focused on long-term landscape dynamics in Sicani Mountains (Western Sicily). Archaeological excavations in the case study site of Contrada Castro (Corleone) have investigated a settlement which was mainly occupied during the Early Middle Ages (late 8th–11th century AD). This paper aims to understand the historical suitability and sustainability of this area analysing the correlation between the current dynamics of plant communities and the historical use of woods detected by the archaeobotanical record. An integrated approach between phytosociology and archaeobotany has been applied. The vegetation series of the study area has been used as a model to understand the ecological meaning and spatial distribution of archaeobotanical data on charcoals from the Medieval layers of the Contrada Castro site. The intersection between the frequency data of the archaeobotanical record and the phytosociological analysis have confirmed the maintenance of the same plant communities during the last millennium due to the sustainable exploitation of wood resources. An integrated comparison between the structure and composition of current phytocoenoses with archaeobotanical data allowed us to confirm that this landscape is High Nature Value (HNV) farmland and to interpret the historical vegetation dynamics linked to the activities and economy of a rural community. Full article
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<p>(<b>A</b>) Case study area and distribution of High Nature Value (HNV) farmland in Sicily (Source: European Environment Agency [<a href="#B46-sustainability-12-03201" class="html-bibr">46</a>]). (<b>B</b>) Location of archaeological site (Contrada Castro) on topographic base map by the Italian Geographic Military Institute (aut. n. 4848 27/07/1998). The U.T.M. grid, in purple, has an interval of 1000 metres. (<b>C</b>) Topographical map of the location of the archaeological excavation in Contrada Castro (Redrawn from: Regional Geographical Information System of Sicily—[<a href="#B47-sustainability-12-03201" class="html-bibr">47</a>]).</p>
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<p>Sicani Mountains landscape: Farmland in Contrada Giardinello (<b>a</b>) and olive groves (<b>b</b>) near Pizzo Castro (Corleone). The area depicted in these photos is free of anthropic elements (buildings, roads, electric lines, etc.). Photos by Pasquale Marino.</p>
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<p>Sicani Mountains landscape: Farmland in Contrada Giardinello (<b>a</b>) and olive groves (<b>b</b>) near Pizzo Castro (Corleone). The area depicted in these photos is free of anthropic elements (buildings, roads, electric lines, etc.). Photos by Pasquale Marino.</p>
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<p>The hill-top plateau of the archaeological site of Contrada Castro (Corleone, Palermo, Sicily). Drone photo by Filippo Pisciotta.</p>
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<p>Dynamical and catenal contacts among forest associations of the Sicani Mountains.</p>
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<p>Mean coverage curves of the associations of Sicani Mountain forests and shrubs. The same color indicates associations belonging to the same vegetation series. The points show the incidence of identified taxa in the total volume of medieval wood charcoals (Phase 1: late 8th–9th century AD; Phase 2: 10th–11th century AD). In the x axis, the numbers indicate the taxa of <a href="#sustainability-12-03201-t002" class="html-table">Table 2</a> (phytosociological record) and the names are related to the taxa of <a href="#sustainability-12-03201-t003" class="html-table">Table 3</a> (archaeobotanical record).</p>
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13 pages, 2158 KiB  
Article
Is Caretta Caretta a Carrier of Antibiotic Resistance in the Mediterranean Sea?
by Rosa Alduina, Delia Gambino, Alessandro Presentato, Antonino Gentile, Arianna Sucato, Dario Savoca, Serena Filippello, Giulia Visconti, Giulia Caracappa, Domenico Vicari and Marco Arculeo
Antibiotics 2020, 9(3), 116; https://doi.org/10.3390/antibiotics9030116 - 10 Mar 2020
Cited by 46 | Viewed by 6150
Abstract
Sea turtles can be considered a sentinel species for monitoring the health of marine ecosystems, acting, at the same time, as a carrier of microorganisms. Indeed, sea turtles can acquire the microbiota from their reproductive sites and feeding, contributing to the diffusion of [...] Read more.
Sea turtles can be considered a sentinel species for monitoring the health of marine ecosystems, acting, at the same time, as a carrier of microorganisms. Indeed, sea turtles can acquire the microbiota from their reproductive sites and feeding, contributing to the diffusion of antibiotic-resistant strains to uncontaminated environments. This study aims to unveil the presence of antibiotic-resistant bacteria in (i) loggerhead sea turtles stranded along the coast of Sicily (Mediterranean Sea), (ii) unhatched and/or hatched eggs, (iii) sand from the turtles’ nest and (iv) seawater. Forty-four bacterial strains were isolated and identified by conventional biochemical tests and 16S rDNA sequencing. The Gram-negative Aeromonas and Vibrio species were mainly found in sea turtles and seawater samples, respectively. Conversely, the Gram-positive Bacillus, Streptococcus, and Staphylococcus strains were mostly isolated from eggs and sand. The antimicrobial resistance profile of the isolates revealed that these strains were resistant to cefazolin (95.5%), streptomycin (43.2%), colistin and amoxicillin/clavulanic acid (34.1%). Moreover, metagenome analysis unveiled the presence of both antibiotic and heavy metal resistance genes, as well as the mobile element class 1 integron at an alarming percentage rate. Our results suggest that Caretta caretta could be considered a carrier of antibiotic-resistant genes. Full article
(This article belongs to the Special Issue Antibiotics and Environment)
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<p>Percentage distribution of bacterial genera in organs, swabs, seawater, eggs and sand.</p>
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<p>Percentage of isolates resistant, intermediate or sensitive to antimicrobial agents. KZ, Cefazolin; S, Streptomycin; AMC, Amoxicillin/Clavulanic acid; CT, Colistin; CRO, Ceftriaxone; SXT, Sulfamethoxazole/Trimethoprim; TE, Tetracycline; ENR Enrofloxacin.</p>
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<p>Percentage distribution of resistant isolates from different origin. KZ, Cefazolin; S, Streptomycin; AMC, Amoxicillin/Clavulanic acid; CT, Colistin; CRO, Ceftriaxone; SXT, Sulfamethoxazole/Trimethoprim; TE, Tetracycline; ENR Enrofloxacin.</p>
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<p>Number of multiple resistant bacteria to antibiotics.</p>
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16 pages, 2848 KiB  
Article
B4GALT1 Is a New Candidate to Maintain the Stemness of Lung Cancer Stem Cells
by Claudia De Vitis, Giacomo Corleone, Valentina Salvati, Francesca Ascenzi, Matteo Pallocca, Francesca De Nicola, Maurizio Fanciulli, Simona di Martino, Sara Bruschini, Christian Napoli, Alberto Ricci, Massimiliano Bassi, Federico Venuta, Erino Angelo Rendina, Gennaro Ciliberto and Rita Mancini
J. Clin. Med. 2019, 8(11), 1928; https://doi.org/10.3390/jcm8111928 - 9 Nov 2019
Cited by 15 | Viewed by 4751
Abstract
Background: According to the cancer stem cells (CSCs) hypothesis, a population of cancer cells with stem cell properties is responsible for tumor propagation, drug resistance, and disease recurrence. Study of the mechanisms responsible for lung CSCs propagation is expected to provide better understanding [...] Read more.
Background: According to the cancer stem cells (CSCs) hypothesis, a population of cancer cells with stem cell properties is responsible for tumor propagation, drug resistance, and disease recurrence. Study of the mechanisms responsible for lung CSCs propagation is expected to provide better understanding of cancer biology and new opportunities for therapy. Methods: The Lung Adenocarcinoma (LUAD) NCI-H460 cell line was grown either as 2D or as 3D cultures. Transcriptomic and genome-wide chromatin accessibility studies of 2D vs. 3D cultures were carried out using RNA-sequencing and Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq), respectively. Reverse transcription polymerase chain reaction (RT-PCR) was also carried out on RNA extracted from primary cultures derived from malignant pleural effusions to validate RNA-seq results. Results: RNA-seq and ATAC-seq data disentangled transcriptional and genome accessibility variability of 3D vs. 2D cultures in NCI-H460 cells. The examination of genomic landscape of genes upregulated in 3D vs. 2D cultures led to the identification of 2D cultures led to the identification of Beta-1,4-galactosyltranferase 1 (B4GALT1) as the top candidate. B4GALT1 as the top candidate. B4GALT1 was validated as a stemness factor, since its silencing caused strong inhibition of 3D spheroid formation. Conclusion: Combined transcriptomic and chromatin accessibility study of 3D vs. 2D LUAD cultures led to the identification of B4GALT1 as a new factor involved in the propagation and maintenance of LUAD CSCs. Full article
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<p>Graphical overview of the investigation. (<b>A</b>) 2D and 3D cell cultures were obtained from the stable NCI–H460 cell line obtained from the malignant pleural effusion of a lung adenocarcinoma (LUAD) patient. Total RNA was extracted and subjected to RNA-seq. Nuclei were isolated and processed to perform ATAC-seq. (<b>B</b>) Computational workflow developed to identify differentially expressed genes, pathways and biological processes in 3D compared to 2D cell cultures.</p>
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<p>Analysis of 2D vs. 3D culture transcriptomes. (<b>A</b>) Volcano plot of over-expressed or under-expressed genes in 3D transcriptome vs. 2D. (blue: significantly under-expressed transcripts; red: significantly over-expressed transcripts). (<b>B</b>) Functional enrichment for upregulated genes in 3D cultures.</p>
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<p>Analysis of DNA accessibility in 3D vs. 2D cultures. (<b>A</b>) ATAC-seq signal enrichment of normalized read counts at differential accessible sites in 3D vs. 2D (red = open; blue = closed). (<b>B</b>) Heatmap of differential chromatin accessibility sites (N = 404) showing the cell condition specificity of 2D and 3D ATAC-seq peaks. (<b>C</b>) Regulatory landscape of B4GALT1 locus. Peaks represent Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq) raw signals. (<b>D</b>) Reverse transcription polymerase chain reaction (RT-PCR) validation level of B4GALT1 upregulated in 3D cells compared to 2D culture in NCI-H460 (stable lung cell line) and BBIRE T-238, BBIRE T248 (primary lung cell lines). H3 reference gene have been used for normalization. Bars represent the mean of three biological replicates and technical replicates with their corresponding standard error of the mean (SEM). *** <span class="html-italic">p</span> &lt; 0.0002; * <span class="html-italic">p</span> &lt; 0.02; ** <span class="html-italic">p</span> &lt; 0.0085.</p>
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<p>Analysis of DNA accessibility in 3D vs. 2D cultures. (<b>A</b>) ATAC-seq signal enrichment of normalized read counts at differential accessible sites in 3D vs. 2D (red = open; blue = closed). (<b>B</b>) Heatmap of differential chromatin accessibility sites (N = 404) showing the cell condition specificity of 2D and 3D ATAC-seq peaks. (<b>C</b>) Regulatory landscape of B4GALT1 locus. Peaks represent Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq) raw signals. (<b>D</b>) Reverse transcription polymerase chain reaction (RT-PCR) validation level of B4GALT1 upregulated in 3D cells compared to 2D culture in NCI-H460 (stable lung cell line) and BBIRE T-238, BBIRE T248 (primary lung cell lines). H3 reference gene have been used for normalization. Bars represent the mean of three biological replicates and technical replicates with their corresponding standard error of the mean (SEM). *** <span class="html-italic">p</span> &lt; 0.0002; * <span class="html-italic">p</span> &lt; 0.02; ** <span class="html-italic">p</span> &lt; 0.0085.</p>
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<p>B4GALT1 gene expression and survival analysis in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) patients. (<b>A</b>) On the left panel is shown a Box Plot of B4GALT1 expression in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC). Each dot represents a patient. (red: cancer tissues; grey: healthy tissues). On the right panel is shown a survival curves depict the B4GALT1 prognostic value in LUAD (N = 239 high expression tissues +239 low expression tissues) and LUSC cohort (N = 241 high expression +241 low expression). Comparison of survival curves was performed using a log-rank (Mantel–Cox) test. HR = Hazard ration. Dotted lines represent the 95% of Confidence Interval. (<b>B</b>) Kaplan–Meier curves depict the cumulative prognostic value of B4GALT1 and SCD1 gene expressions in LUAD (N = 250 high expression tissues + 254 low expression tissues) and LUSC (N = 153 high expression tissues + 342 low expression tissues) Abbreviations: LUAD, lung adenocarcinoma; LUSC lung squamous cell carcinoma; num, number; T, tumor; N, normal.</p>
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<p>B4GALT1 gene expression and survival analysis in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) patients. (<b>A</b>) On the left panel is shown a Box Plot of B4GALT1 expression in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC). Each dot represents a patient. (red: cancer tissues; grey: healthy tissues). On the right panel is shown a survival curves depict the B4GALT1 prognostic value in LUAD (N = 239 high expression tissues +239 low expression tissues) and LUSC cohort (N = 241 high expression +241 low expression). Comparison of survival curves was performed using a log-rank (Mantel–Cox) test. HR = Hazard ration. Dotted lines represent the 95% of Confidence Interval. (<b>B</b>) Kaplan–Meier curves depict the cumulative prognostic value of B4GALT1 and SCD1 gene expressions in LUAD (N = 250 high expression tissues + 254 low expression tissues) and LUSC (N = 153 high expression tissues + 342 low expression tissues) Abbreviations: LUAD, lung adenocarcinoma; LUSC lung squamous cell carcinoma; num, number; T, tumor; N, normal.</p>
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<p>Knockdown of B4GALT1 RNA decreases the 3D structure formation and the expression of stemness markers. (<b>A</b>) Representative images of silencing of B4GALT1 reduction of 3D structure formation potential compared to the scramble of H460 cells. Scale bar = 100 µm. (<b>B</b>) Graphs show that silencing of B4GALT1 in 3D induces a decrease of volume and number of 3D spheroids. Number and volume of the 3D cells counted in each well after four days of culture. (<b>C</b>) Validation of B4GALT1 silencing in 3D cells, the results show a strongly decreases of stemness markers mRNA levels, such as Oct4, Sox2, Nanog, and SCD1. Expression of each gene was normalized to that of H3. (<b>D</b>) ALDH activity decrease substantially in 3D siB4GALT1 vs. Scramble cells. Experiments were performed in triplicate, and the background interference and the blank value were subtracted from the absorbance of the samples. In the bar plots, the mean ± standard error of mean (SEM) was shown from at least three independent experiments * <span class="html-italic">p</span>&lt; 0.05, **<span class="html-italic">p</span>&lt; 0.005, **** <span class="html-italic">p</span>&lt; 0.0001 (vs. scramble).</p>
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