Cancer Biology & Therapy
ISSN: 1538-4047 (Print) 1555-8576 (Online) Journal homepage: https://www.tandfonline.com/loi/kcbt20
Sequence mutations and amplification of PIK3CA
and AKT2 genes in purified ovarian serous
neoplasms
Kentaro Nakayama, Naomi Nakayama, Robert J. Kurman, Leslie Cope,
Gudrun Pohl, Yardena Samuels, Victor E. Velculescu, Tian-Li Wang & Ie-Ming
Shih
To cite this article: Kentaro Nakayama, Naomi Nakayama, Robert J. Kurman, Leslie Cope,
Gudrun Pohl, Yardena Samuels, Victor E. Velculescu, Tian-Li Wang & Ie-Ming Shih (2006)
Sequence mutations and amplification of PIK3CA and AKT2 genes in purified ovarian serous
neoplasms, Cancer Biology & Therapy, 5:7, 779-785, DOI: 10.4161/cbt.5.7.2751
To link to this article: https://doi.org/10.4161/cbt.5.7.2751
Published online: 01 Jul 2006.
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[Cancer Biology & Therapy 5:7, 779-785, July 2006]; ©2006 Landes Bioscience
Research Paper
Sequence Mutations and Amplification of PIK3CA and AKT2 Genes
in Purified Ovarian Serous Neoplasms
Kentaro Nakayama1,†
Naomi Nakayama1,†
Robert J. Kurman1-3
Leslie Cope2
Gudrun Pohl1
Yardena Samuels2
Victor E. Velculescu2
Tian-Li Wang2,3,*
Ie-Ming Shih1-3,*
ABSTRACT
Departments of 1Pathology, 2Oncology and 3Gynecology and Obstetrics; Johns
Hopkins Medical Institutions; Baltimore, Maryland USA
†These authors contibuted equally to this manuscript.
*Correspondence to:Ie-Ming Shih; Johns Hopkins Medical Institutions; 550 Orleans
Street, Room 305; Baltimore, Maryland 21231 USA; Tel.: 410.502.7774; Fax:
410.502.7943; Email: ishih@jhmi.edu/ Tian-Li Wang; Johns Hopkins Medical
Institutions; 1503 E. Jefferson Street, Room: B-315; Baltimore, Maryland 21231
USA; Tel.: 410.502.0863; Fax: 410.502.7943; Email: tlw@jhmi.edu
.D
ON
OT
DI
ST
RIB
UT
E
.
Sequence mutations and gene amplifications lead to activation of the PIK3CA-AKT2
signaling pathway and have been reported in several types of neoplasms including ovarian cancer. Analysis of such genetic alterations, however, is usually complicated by
contamination of normal cell DNA, artifacts associated with formalin-fixed tissues and the
sensitivity of the techniques employed. In this study, we analyzed the sequence mutations
in PIK3CA and AKT2 genes using purified tumor cells that were isolated from high-grade
ovarian serous carcinomas and serous borderline tumors (SBTs) and assessed gene amplification using a dual-color FISH on tissue microarrays. Somatic sequence mutations in the
kinase domain of AKT2 were not detected in any of the 65 ovarian tumors analyzed.
Mutations of PIK3CA were rare, occurring only in one (2.3%) of 44 high-grade serous
carcinomas and in only one (4.8%) of 21 SBTs. Dual-color FISH demonstrated that PIK3CA
and AKT2 were not amplified in SBTs but amplified in 13.3% and 18.2% high-grade
carcinomas, respectively. High-level amplification (>3 fold) was more frequently observed
in AKT2 than in PIK3CA. Unlike mutations in ERBB2, KRAS and BRAF which are mutually
exclusive in SBTs, coamplification of PIK3CA and AKT2 was present in five high-grade
carcinomas including the OVCAR3 cells. Amplification in either of the genes occurred in
27% high-grade serous carcinomas. In conclusion, the methods we employed provide
unambiguous evidence that somatic sequence mutations of PIK3CA and ATK2 are rare in
ovarian serous tumors but amplification of both genes may play an important role in the
development of high-grade ovarian serous carcinoma.
Previously published online as a Cancer Biology & Therapy E-publication:
http://www.landesbioscience.com/journals/cbt/abstract.php?id=2751
KEY WORDS
ACKNOWLEDGEMENTS
LA
ND
ES
This study was supported by the US
Department of Defense grant (OC04-0060)
and the National Cancer Institute grant (RO1
CA103937). The authors thank Dr. May J.
Yen for preparation of the figure illustrations.
NOTES
INTRODUCTION
Ovarian cancer is the most lethal gynecologic malignancy and serous tumors are the
most common type of ovarian cancer.1,2 Ovarian serous neoplasms are heterogeneous and
can be divided into high- and low-grade tumors that are characterized by distinctive
molecular, histopathological and clinical features.3-6 High-grade tumors are the usual type
of ovarian serous carcinoma. They are aggressive and have a high mortality rate. Low-grade
tumors are composed mainly of serous borderline tumors (SBTs) and invasive low-grade
serous carcinomas. SBTs may progress to invasive low-grade carcinomas which are indolent
neoplasms with a better outcome than high-grade serous carcinomas. Mutations of KRAS
and BRAF occur in approximately two thirds of low-grade serous tumors but are rare in
high-grade serous carcinomas.5-8 In contrast, somatic TP53 mutations are detected in greater
than 60% of high-grade serous carcinoma and only rarely (8%) in low-grade serous tumors.9
Furthermore, both high-grade carcinomas and low-grade tumors are characterized by
distinctive gene expression profiles.10-12 Based on these findings, a dualistic model of ovarian
serous carcinogenesis in which high-grade and low-grade ovarian serous tumors develop
along distinctly different molecular pathways has been proposed.3
Activating mutations and amplification of genes in kinase signaling pathways play a
critical role in tumorigenesis. Moreover, the mutated kinase proteins can potentially
provide new targets for a kinase inhibitor or antibody-based therapy. In this study, we
focused on somatic mutations and gene amplifications of the phosphoinositide 3-kinase
(PIK3CA)-AKT2 signaling pathway because PIK3CA gene and its downstream gene,
AKT2, are thought to be important in ovarian cancer development and therefore are
potential molecular targets for new therapeutics.8,13-16 The PI3K-AKT2 signaling pathway
regulates diverse cellular functions including cellular proliferation, survival and migration.17-19
Somatic mutations within the PIK3CA kinase domains have been reported in colorectal,
brain, ovarian and breast cancers.20-24 In addition, increased PIK3CA and AKT2 gene
copy numbers have been detected in pancreatic, ovarian, cervical, head and neck, and lung
BIO
SC
mutation, amplification, FISH, digital karyotyping, ovarian cancer
IEN
CE
Received 02/27/06; Accepted 03/26/06
©
20
06
Supplemental information can be found at:
http://www.landesbioscience.com/journals/cbt/
supplement/nakayama5-7-supp.pdf
www.landesbioscience.com
Cancer Biology & Therapy
779
Mutation Profiles of PIK3CA and AKT2 in Ovarian Cancer
carcinomas.13,14,25-27 Although molecular genetic analysis has been
performed in ovarian cancer,23,28,29 none of the reports employed
purified tumor samples to determine sequence mutations and fluorescence in situ hybridization (FISH) analysis on surgical specimens
to assess gene copy number. Finally, simultaneous analyses of copy
number changes in both PIK3CA and AKT2 have not been performed
on the same tumor tissues. In order to clarify the mutational profiles
of PIK3CA and AKT2 genes in surgical specimens, we obtained
genomic DNA from purified high-grade serous carcinomas and
SBTs in which the high purity of tumor cells was confirmed by
cytokeratin staining and identification of heterozygous somatic
mutations in control genes. We also analyzed DNA copy number
changes of PIK3CA and AKT2 genes in the same archival tumor
specimens using a dual-color FISH which is an accurate method of
assessing gene amplification especially for those with a low-level gain.
MATERIALS AND METHODS
Tissue samples and tumor cell isolation. High-grade (conventional)
ovarian serous carcinomas and ovarian serous borderline tumors
(SBTs) [atypical proliferative serous tumors and intraepithelial
(micropapillary) low-grade serous carcinomas] were obtained from
the Department of Pathology at the Johns Hopkins Hospital between
2000 and 2005. All high-grade ovarian tumors were advanced stage
(FIGO stage III and IV). Acquisition of tissue specimens was approved
by the institutional review board at the Johns Hopkins Hospital.
For sequencing analysis, tumor cells from 65 serous tumors (44
high-grade serous carcinomas and 21 serous borderline tumors) were
isolated using the following protocol illustrated in Figure 1. Frozen
section examination was performed by a surgical pathologist (IS) on
all specimens to confirm the diagnosis before tissue harvesting. For
high-grade carcinomas, fresh tumor tissues were washed in cold
phosphate buffered saline (PBS), minced to ~1 mm3 fragments and
digested with collagenase A (10 mg/ml) with mild agitation at 37˚C
for 40 min. Single tumor cells or small tumor cell clusters (<10 cells)
were collected from the top portion of centrifuge tubes after the
large incompletely digested tissue fragments descended to the bottom
of the tube. The tumor cells were washed with PBS and then isolated
using magnetic beads coated with an Ep-CAM antibody (Dynal,
Oslo, Norway). The tumor cells were either directly harvested for
genomic DNA isolation or cultured in RPMI1640 containing 10%
fetal bovine serum for three days to expand the tumor cell population
for those samples with only limited amounts of tumor tissue. For SBTs,
the fresh tumor fragments were harvested directly into centrifuge
tubes containing 0.05% trypsin and 200 µg/ml EDTA in HBSS
(Invitrogen) without mincing and collagenase digestion. This
approach allowed epithelial (tumor) cells that covered the surface of
papillary structures of borderline tumors to detach from the basement
membrane without digesting the underlying stromal cells, thus
minimizing possible stromal cell contamination. After incubation at
37˚C for 20 min, the SBT fragments were agitated at room temperature for 1 min to allow complete separation of epithelial cells from
the tissue fragments. The epithelial cells were washed with culture
medium twice and cultured for 3 days. Purity of the tumor cells was
confirmed by immunostaining with an anti-cytokeratin antibody,
CAM 5.2 (Becton Dickinson, San Jose, CA). The genomic DNA
from normal uterus or colonic mucosa from the same patient was
also obtained for all cases.
For dual-color FISH analysis, formalin-fixed, paraffin-embedded
tissues were used. A total of 124 specimens consisting of 74 high-grade
780
Figure 1. Tumor cell purification from surgical specimens in a serous borderline tumor SBT) and a high-grade (HG) ovarian serous carcinoma.
serous carcinomas, 37 SBTs and 13 normal ovaries were arranged
onto tissue microarrays for FISH analysis. Three representative cores
(1.5 mm diameter) from each tumor block were placed on the tissue
microarrays.
Mutational analysis. Nucleotide sequencing was used to analyze
the mutational status of PIK3CA and AKT2 in tumor cells isolated
from the ovarian serous tumors. In addition, KRAS, BRAF, ERBB2
and TP53 genes were also analyzed in the same panel for comparison.
In this study, we focused on analyzing the exons that have been
reported to harbor the majority of mutations for each of the genes.
The primer sequences and the PCR protocol have been previously
described.6,9,20,30-35 Supplement Table 1 listed PCR and sequencing
primers of all the exons that were sequenced in this study. PCR
products were purified and sequenced at Agencourt Bioscience
(Beverly, MA).
Fluorescence in situ hybridization (FISH). For the PIK3CA
locus, bacterial artificial chromosome clones containing the target
(RP11-245C23) and referenced (RP11-69N24) chromosomal
regions hybridized to 3q26.32 and 3q13.11, respectively. For the
AKT2 locus, bacterial artificial chromosome clones containing the
target (CTC-425O23) and referenced (RP11-75H6 and
CTD-3195E18) chromosomal regions hybridized to 19q13.2 and
the reference probe to 19p13.13, respectively. The bacterial artificial
chromosome clones were purchased from Bacpac Resources
(Children’s Hospital Oakland, CA) and Invitrogen.
Cancer Biology & Therapy
2006; Vol. 5 Issue 7
Mutation Profiles of PIK3CA and AKT2 in Ovarian Cancer
Table 1
Mutational status of kinase genes in ovarian serous tumors
Case No.
Tumor
PIK3CA
AKT2
ERBB2
KRAS
BRAF
1
SBT
WT
WT
12 bp ins**
WT
WT
2
SBT
WT
WT
WT
WT
T1976A:V600E
3
SBT
WT
WT
WT
G35T:G12V
WT
4
SBT
WT
WT
WT
G35A:G12D
WT
5
SBT
WT
WT
WT
G35A:G12D
WT
6
SBT
WT
WT
WT
WT
T1976A:V600E
7
SBT
WT
WT
WT
WT
WT
8
SBT
WT
WT
WT
WT
WT
9
SBT
WT
WT
WT
WT
WT
10
SBT
WT
WT
WT
WT
T1976A:V600E
11
SBT
A3140G:H1047R
WT
WT
G35T:G12V
WT
12
SBT
WT
WT
WT
G38T:G13V
WT
13
SBT
WT
WT
WT
WT
WT
14
SBT
WT
WT
WT
G35T:G12V
WT
15
SBT
WT
WT
WT
WT
WT
16
SBT
WT
WT
WT
WT
T1976A:V600E
17
SBT
WT
WT
12 bp ins
WT
WT
18
SBT
WT
WT
WT
WT
T1976A:V600E
19
SBT
WT
WT
WT
WT
WT
20
SBT
WT
WT
WT
WT
WT
21
SBT
WT
WT
WT
G35T:G12V
WT
22–63
HG1-42
WT
WT
WT
WT
WT
64
HG43
WT
WT
WT
WT
T1976A:V600E
65
HG44
A3140G:H1047R
WT
WT
WT
WT
SBT, serous borderline tumor; HG, high-grade serous carcinoma. *12 bp insertion at 2313–2324.
The method for FISH on tissue sections has been detailed in a
previous report.36 Target and reference probes were labeled with
biotin and digoxigenin, respectively. To detect biotin-labeled and
digoxigenin-labeled signals, slides were first incubated with
FITC-avidin (Vector, Burlingame, CA) and anti-digoxigenin sheep
Fab fragment (Roche, Indianapolis, IN); then incubated with a
biotinylated anti-avidin antibody (Vector, Burlingame, CA) and
TRITC-conjugated rabbit anti-sheep F(ab)2 (Jackson
ImmunoResearch, West Grove, PA); followed by incubation with
FITC-avidin and TRITC-conjugated goat anti-rabbit F(ab)2
(Jackson ImmunoResearch). Two investigators (TLW and IS) who
were not aware of the tumor grade and clinical information evaluated
the FISH signals. Approximately 100 tumor cells were examined for
each specimen. Gain of DNA copy number of a gene was defined as
the ratio of the gene probe signal to the control probe signal exceeding
1.5. High-level of amplification was defined as a signal ratio greater
than 3.
www.landesbioscience.com
RESULTS
Our method for tumor cell purification yielded a sample in which
tumor cells comprised greater than 99% of the sample for all
high-grade carcinomas and SBTs based on immunostaining for
cytokeratin. Both high-grade carcinoma and SBT cells formed cohesive
epithelial nests in short term primary cultures (Fig. 1). The mutational
status of PIK3CA, AKT2, ERBB2, KRAS and BRAF in all 65 purified
ovarian serous tumors is summarized in Table 1. Somatic mutations
of PIK3CA were identified in one (2.3%) of 44 high-grade serous
carcinomas and in one (4.8%) of 21 SBTs. Both mutations were
heterozygous and were located at A3140G of a kinase domain (Fig. 2
and Table 1). Neither SBTs nor high-grade serous carcinomas
demonstrated a somatic mutation in the AKT2 kinase domain. Since
mutations of both kinase genes in either high-grade carcinomas or
SBTs were so infrequent, we used TP53 gene as a positive control for
high-grade serous carcinomas because TP53 mutation is the most
frequent molecular genetic change known so far in high-grade ovarian
Cancer Biology & Therapy
781
Mutation Profiles of PIK3CA and AKT2 in Ovarian Cancer
Table 2
DNA copy number changes of the PIK3CA locus
in ovarian tumors based on FISH analysis
PIK3CA Locus
OSE
SBT
HG
No gain or amplified
Low gain (1.5–3 fold)
High gain (> 3 fold)
polyploidy
13
0
0
0
37
0
0
0
52
7
1
14
Total
13
37
74
OSE, ovarian surface epithelium from normal ovaries; SBT, serous borderline tumor; HG, high-grade serous
carcinoma.
Figure 2. Chromatograms of PIK3CA and ERBB2 mutational status in two
representative serous borderline tumors (case number 11 and 17). Case 11
shows a heterozygous somatic mutation at the nucleotide 3140 (A to G).
Case 17 demonstrates a heterozygous 12 bp in-frame insertion mutation at
the nucleotide of 2313–2324.
serous carcinomas.3,9,35 Two kinase genes including KRAS and
BRAF were used as controls for SBTs because they are the most
common mutations in SBTs.37 As ERBB2 may regulate the KRAS
signaling pathway, we also analyzed the mutational status of this
gene in SBTs. Among 44 high-grade carcinomas, 34 (77%) tumors
harbored TP53 nonsynonymous mutations or deletions and the
majority of the mutations were homozygous changes (data not
shown). Somatic mutations of either ERBB2, KRAS and BRAF
occurred in 9.5%, 33% and 24% of SBTs, respectively. Most KRAS
mutations were located at codon 12 and all BRAF mutations at codon
600, the hot spots of mutations for both genes. ERBB2 mutations
occurred as a 12-bp insertion at the nucleotide 2313-2324 (Fig. 2
and Table 1). The mutations of ERBB2, KRAS and BRAF mutations
were not shared in any of the SBTs. The high frequency of somatic
mutations detected in those control genes with an unambiguous
chromatogram tracing indicated that the purified samples used in
this study had a high fraction of tumor cells and that the rare
mutation of PIK3CA and lack of mutation in the AKT2 genes were
not likely to be an artifact due to sample preparation or methods of
PCR and nucleotide sequencing.
In addition to somatic sequence mutations, gene amplification
provides another mechanism to activate a kinase oncogenic pathway.
Accordingly, we performed dual-color FISH to determine the amplification status of PIK3CA and AKT2 in both high-grade serous carcinomas and SBTs. Dual-color FISH was used because this method
provides high sensitivity and specificity in counting gene copy number. PIK3CA and AKT2 gene copy numbers were assessed in the
same tumor tissues to determine if there was a correlation of DNA
copy number gain between both genes. FISH was first performed in
the OVCAR3 ovarian cancer cell line and 6 representative
high-grade serous carcinoma tissues in which the DNA copy
782
number changes in PIK3CA and AKT2 had been detected by digital
karyotyping.38 The latter is a genome-wide technology to assess gene
copy number by counting sequencing tags that represent different
genomic loci.39 Digital karyotyping analysis showed that all samples
lacked a discrete gain or amplification (< 5 Mb) in the 3q PIK3CA
locus including the OVCAR3 cells which demonstrated a two-fold
gain along the whole 3q arm (Fig. 3 and supplementary Fig. 1).
Dual-color FISH was performed on the metaphase OVCAR3 cells
and demonstrated a low level gain (~2 fold) at the PIK3CA locus in
OVCAR3 cells (Fig. 3) which was consistent with a previous
report.25 We correlated the PIK3CA gene copy number and mRNA
expression levels and found only a marginal correlation (p = 0.04).
Among those cases with gain of the PIK3CA region, four specimens
showed downregulation of PIK3CA mRNA as compared to ovarian
surface epithelial cultures. In contrast to this low level gain of
PI3KCA, digital karyotyping showed a discrete 10 fold amplification
spanning ~3 Mb of the AKT2 locus in the OVCAR3 cells (Fig. 2)
and a 5 fold amplification in the other carcinoma tissues (Park et al,
unpublished data). FISH analysis of this region showed a homogenously staining region (HSR) in tumor cells in both cases (Fig. 3). In
the remainder of the cases, both target and reference probes showed
equal signals in both PIK3CA and AKT2 loci. The analysis correlating digital karyotyping and FISH results validated the FISH method
to determine DNA copy number of PIK3CA and AKT2 in archival
paraffin tissues.
Using the same probes, we performed dual-color FISH on a panel
of paraffin tissues from different types of ovarian serous tumors and
normal ovaries that were arranged in tissue microarrays. Based on the
FISH analysis, we did not identify gain of PIK3CA gene copy number in 37 SBTs and 13 cases of surface epithelium from normal
ovaries (Table 2). In contrast, PIK3CA amplification was detected in
8 of the 60 (13.3%) high-grade serous carcinomas in addition to 14
other cases with a polyploid pattern (same increased number of signals between PIK3CA and control probes) as these tumors were not
considered to have amplification specific to PIK3CA. Among the
amplified cases, only one showed a high level of amplification manifested as HSR and the other six cases were of low level gains (1.5-3
fold). FISH analysis also demonstrated that AKT2 did not amplify
in any of the normal ovarian surface epithelial samples and SBTs
(Table 3). In contrast, AKT2 amplification was observed in 12 of 66
(18.2%) high-grade serous carcinomas, the majority of which
demonstrated high-level amplification as manifested by HSR. In
addition, there were 8 cases showing a polyploid pattern (Table 3).
Performing FISH analysis on the same tissues allowed us to assess the
relationship of PIK3CA and AKT2 amplification in high-grade ovarian serous carcinomas. Four high-grade serous carcinomas and the
OVCAR3 cell line showed coamplification of PIK3CA and AKT2.
Cancer Biology & Therapy
2006; Vol. 5 Issue 7
Mutation Profiles of PIK3CA and AKT2 in Ovarian Cancer
Figure 3. Digital karyotyping and dual-color FISH
analysis of the PIK3CA and AKT2 copy number in
OVCAR3 cells. Digital karyotyping of OVCAR3 cell
line shows a two-fold increase in the entire 3q arm that
harbors PIK3CA. FISH probes are designed to hybridize
to the PIK3CA locus (red arrow) and a reference
chromosomal region (green arrow). The centromeres
are indicated by triangles. FISH analysis demonstrated
an increase in the signals of PIK3CA with a ratio of
PIK3CA/reference probe signal counts of 2. In contrast,
the AKT2 region which is located on chromosome 19q
is highly amplified in OVCAR3 cells and FISH shows a
homogenously stained region pattern in tumor cells.
Amplification in either PIK3CA and/or AKT2 occurred in 16 of 59
(27%) nonpolyploid cases.
DISCUSSION
In this study, we performed a comprehensive mutational analysis
of exons 1, 9 and 20 of PIK3CA and the kinase domain of AKT2 in
purified ovarian serous neoplasms including high-grade (conventional) serous carcinomas and serous borderline tumors (SBTs). In
contrast to previous studies which analyzed nonpurified
tumors,23,28,29 only purified tumor samples from surgical specimens
were analyzed for sequence mutations in this study. Purified tumor
cells are far superior for mutational analysis as DNA contamination
from normal cells and the PCR/sequencing artifacts from formalin-fixed paraffin- embedded tissue are minimized. In addition,
dual-color FISH provides a clear assessment of DNA copy number
gains of PIK3CA and AKT2 in the same tumor tissues thereby allowing a determination of the relationship of amplification between
both genes. Our findings demonstrate that compared to high-grade
serous carcinomas, SBTs are characterized by mutations in the
ERBB2-KRAS-BRAF signaling pathway while high-grade ovarian
serous carcinomas have an increased gene copy number of the
PIK3CA-AKT2 signaling pathway. These results shed new light on
the pathogenesis of serous carcinoma of the ovary and may have
important therapeutic implications.
The low frequency (3%) of mutations of PIK3CA in both
purified high-grade serous carcinomas and SBTs confirms what has
been reported previously.23,28 These data and the lack of somatic
mutations in the AKT2 kinase domain in all the samples tested
indicates that activating sequence mutations of the PIK3CA-AKT2
pathway most likely do not play a significant role in the development
of ovarian serous tumors. We also analyzed the copy number
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changes of PIK3CA and AKT2 in ovarian serous
tumors using dual-color FISH, a method thought
to provide a more sensitive and specific assessment
of gene copy number in tissues. We found a low
level gain (1.5-3 fold increase) in PIK3CA in the
majority of PIK3CA amplified specimens. This is
consistent with a previous report using FISH that
showed a low copy number gain (1.5–2.5 fold) of
PIK3CA in the majority of ovarian cancer cell
lines.25 These results differ from another study
reporting high level amplification (>7 fold) in
24.5% of ovarian cancers based on genomic
real-time PCR.23 The discrepancy is probably due
to the different methods used to measure the
PIK3CA copy number. It is generally acknowledged
that FISH analysis which is based on directly counting probe signals
provides the most sensitive and specific method of assessing gene
copy number, especially for samples with low copy number
gains.40-42 In contrast, analysis of DNA copy number using genomic
real-time PCR can be complicated by the primer selection, the presence
of genomic repeats/pseudogenes that can lead to spurious results
because of inappropriate primer set, as well as background noise
inherent in real-time PCR. The frequency of high copy number gain
in the PIK3CA gene is much lower than in the AKT2 gene which is
known to be a frequently amplified oncogene in ovarian cancer.13
The molecular genetic findings in this report imply that amplification
of the genes in the PIK3CA-AKT2 pathway may play an important
role in the development of ovarian high-grade serous carcinoma.
However, it is also likely that PIK3CA contributes to tumor development through another downstream mediator, other than AKT2,
because amplification of AKT2 and gain of PIK3CA were found in a
small set of 4 high-grade carcinomas and in the OVCAR3 cell line.
The low level gains of PIK3CA may not have significant biological
significance as the increased DNA copy number of PIK3CA only
marginally correlates with its RNA copy number. In this study, we
have shown overexpression of PIK3CA in some of ovarian high-grade
serous carcinomas, a finding similar to a previous report demonstrating that PIK3CA protein (p110α) overexpression could be
detected in of ovarian carcinomas.43
The identification of a 12 bp in-frame insertion mutation of
ERBB2 in this study is of interest since sequence mutations have not
been reported in ovarian neoplasms although amplification of
ERBB2 has been extensively studied in ovarian carcinomas. The
frequency and type of ERBB2 insertion mutation in SBTs are similar
to those reported in lung adenocarcinomas31 but are different from
gastric, colorectal and breast carcinomas.44 Although the number of
tumors with ERBB2 mutations in this study was small, the mutually
Cancer Biology & Therapy
783
Mutation Profiles of PIK3CA and AKT2 in Ovarian Cancer
Table 3
DNA copy number changes of the AKT2 locus
in ovarian tumors based on FISH analysis
AKT2 locus status
OSE
SBT
HG
No gain or amplified
13
34
54
Low gain (1.5-3 fold)
0
0
4
8*
High gain (> 3 fold)
0
0
Polyploidy
0
3
8
Total
13
37
74
OSE, ovarian surface epithelium from normal ovaries; SBT, serous borderline tumor; HG, high-grade
serous carcinoma. *Cases show high-level amplification as manifested by homogenous staining region.
exclusive pattern among ERBB2, KRAS and BRAF mutations suggests
that each of the kinase genes has a similar effect in the development
of SBTs.
In conclusion, our findings indicate that amplification of genes
in the PIK3CA-AKT2 pathway occurs in high-grade ovarian serous
carcinomas and somatic mutations in the ERBB2-KRAS-BRAF
pathway occur in SBTs. These findings provide further support for
the dualistic model of ovarian serous tumorigenesis which proposes
that low-grade serous carcinomas arise from a well characterized
precursor, namely SBTs, whereas high grade serous carcinoma arises
along an entirely different pathway in which morphologically
characterized precursor lesions have not yet been identified.3,37 As
small molecule kinase inhibitors show promise for the treatment of
tumors with specific kinase activation,15,45,46 the findings in this
study have potential clinical application for target-based therapy in
patients with different types of ovarian serous neoplasms.
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