Geoderma 261 (2016) 204–221
Contents lists available at ScienceDirect
Geoderma
journal homepage: www.elsevier.com/locate/geoderma
Digital mapping of soil carbon in a viticultural region of Southern Brazil
Benito R. Bonfatti a,b,c, Alfred E. Hartemink b,⁎, Elvio Giasson a, Carlos G. Tornquist a, Kabindra Adhikari b
a
b
c
Universidade Federal do Rio Grande do Sul, UFRGS, Faculdade de Agronomia, Av. Bento Gonçalves, 7712, Porto Alegre, RS 91540-000, Brazil
University of Wisconsin — Madison, Department of Soil Science, FD Hole Soils Lab, 1525 Observatory Drive, Madison, WI 53706, USA
CAPES Foundation, Ministry of Education of Brazil, Brasília, DF 70040-020, Brazil
a r t i c l e
i n f o
Article history:
Received 4 March 2015
Received in revised form 21 July 2015
Accepted 23 July 2015
Available online xxxx
Keywords:
Soil carbon
Subtropical soils
Vineyard
Carbon stocks
Inceptisols
Ultisols
a b s t r a c t
There is a need for soil C assessment in the soils of tropical and subtropical areas. We have aimed to quantify the
spatial extent of SOC concentration and stocks under different land use and soil types in an 8118 ha area in
southern Brazil. Common soils are Inceptisols, Ultisols and Mollisols, and the dominant land use is forest and
vineyard. SOC data were modeled by 5 depths deriving values from spline functions. Regression kriging was
used to model SOC concentration for each depth to 100 cm, and for producing a soil depth map. Uncertainty
was estimated by empirical approach, using sequential Gaussian geostatistical simulation of the residuals. The
Projected Natural Vegetation Soil Carbon (PNVSC) approach was used to evaluate changes in soil carbon due
to land use change. Bulk density was estimated by pedotransfer functions. SOC stocks were calculated using
the SOC prediction, bulk density and the soil depth map, and the stocks were corrected by cumulative mass coordinates. The models for SOC concentration prediction explained about 44% of the variance at 30–60 cm depth
and with slightly lower values for other depths. Important covariates for prediction were Soil Order (Entisols),
coordinate X, Aspect and the DEM. The model for the prediction of soil depth explained 43% of variance and important covariates were Soil Order (Entisol, Mollisol, Ultisol), Valley Depth and TWI. Soils under forest accumulated more carbon in the top 30 cm whereas soils under pasture had higher SOC levels with depth. Soils under
arable crops and vineyard had the lowest SOC concentration. SOC concentration decreases by depth, as well as
prediction intervals of uncertainty, until 60 cm depth. The SOC stocks (0–100 cm) varied between 104 t C/ha
in vineyards on Alfisols, and 280 t C/ha in pasture areas on Oxisols. The PNVSC analysis showed that most soils
had lost SOC compared to when they were projected to be under forest.
Published by Elsevier B.V.
1. Introduction
Assessing the amount and distribution of soil organic carbon (SOC)
levels is important as it provides information about soil fertility, rates
of sequestration of carbon, recovery of degraded soil, or the impact of
land use changes. Mapping the SOC concentration and stocks is challenging because of the considerable variation and dynamics. Spatial
and temporal SOC changes are affected by natural and anthropic factors
including management practices and land use changes.
Several recent studies have predicted and mapped SOC (Adhikari
et al., 2014; Padarian et al., 2012; Kirsten et al., 2015; Malone et al.,
2009; Mendonça-Santos et al., 2010; Ross et al., 2013; Zhang and
Shao, 2014) and the estimation is based on relation between covariates
(land use, soil type, slope, aspect, etc.) and SOC levels. Different covariates were found in models to explain SOC distribution. Thompson and
Kolka (2005) found that more than 71% of SOC variation could be
⁎ Corresponding author.
E-mail address: hartemink@wisc.edu (A.E. Hartemink).
http://dx.doi.org/10.1016/j.geoderma.2015.07.016
0016-7061/Published by Elsevier B.V.
explained by slope, aspect, curvature, topographic wetness index and
overland flow distance. Wiesmeier et al. (2014) found that the most
important factors to predict SOC stocks were land use, soil type, soil
moisture and climate. Adhikari et al. (2014) predicting SOC concentration, at different soil depths, reported that the importance of variables
differed by depth. Minasny et al. (2013) synthesized a large number of
digital SOC mapping studies and concluded that different covariates
could explain the variation of SOC depending on the complexity of the
landscape.
The majority of SOC inventory assessments to date focused the
0–20 cm or 0–30 cm surface layers, whereas considerable amounts of
SOC may be present deeper in the soil profile (Lal, 2005; Rumpel and
Kögel-Knabner, 2011; Minasny et al., 2013; Boddey et al., 2010). Sisti
et al. (2004) studied SOC stocks down to 100 cm depth with zero tillage
and conventional tillage and found, in rotations with vetch planted as a
winter green-manure crop, significantly higher soil carbon and nitrogen
concentrations under zero tillage, with most of the differences occurring
at 30–85 cm depth. Angers and Eriksen-Hamel (2008) showed different
interpretation of SOC stocks when considering different depths, in no till
and full-inversion tillage. Full-inversion tillage could accumulate more
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
carbon at the bottom of the plow layer, but the SOC does not completely
offset the gain under no till in the surface horizon. The authors highlight
the importance of taking into account the whole profile to understand
the distribution of SOC stocks.
Land use has major impacts on SOC concentration and stocks. However, these effects are also affected by soil class and depth (Hartemink
and McSweeney, 2014; Nieder and Benbi, 2008). Changes in land use
impacts the SOC levels and modifies soil characteristics. Several studies
explained the changes of SOC with land use change. Conant et al.
(2001), reviewing 115 studies, found that conversion from native land
(mostly rain forest) to pasture increased soil C content for nearly 70%
of the studies. Guo and Gifford (2002), compiling 74 publications,
found that SOC stocks declined after land use changed from pasture to
plantation (− 10%), native forest to plantation (− 13%), native forest
to crop (−42%), and pasture to crop (−59%). However, the SOC stocks
increased when the native forest was converted to pasture (+8%), crop
to pasture (+19%), crop to plantation (+18%), and crop to secondary
forest (+ 53%). Cerri and Andreux (1990) showed that C levels after
50 years of sugarcane cultivation, in São Paulo, Brazil, were 46% of the
levels under primary forest.
Although there is a considerable body of research on the digital mapping of SOC in temperate regions, few studies have been conducted in
the tropical and subtropical areas. Examples include Berhongaray et al.
(2013) estimating SOC stocks in Argentine Pampas, Cheng et al.
(2004) predicting SOC concentration in a subtropical area in China,
Vasques et al. (2010) estimating SOC stocks in a subtropical watershed
in Florida. Digital soil mapping has been used in Brazil (Giasson et al.,
2006; Mendonça-Santos and Santos, 2007) and examples of SOC predictions include the studies by Mendonça-Santos et al. (2010) whom used
regression-kriging for evaluate the SOC stocks in Rio de Janeiro State,
and de Souza et al. (2014) using regression-kriging to predict SOC and
clay content in Rio Doce Basin (Minas Gerais State). There have been
other studies (e.g., Cerri et al., 2007; Tornquist et al., 2009b) where ecosystem models such as Century or Rothamsed C Model were applied to
estimate SOC dynamics in the upper soil layers from different areas in
Brazil.
The present study aimed to analyze the distribution of soil C in the
grape growing region of Vale dos Vinhedos, in Rio Grande do Sul State,
Brazil. The objectives were as follows: (i) to quantify and understand
the spatial variation of SOC concentration by depth through digital
soil mapping, and to assess the uncertainty, (ii) to quantify and
map SOC stocks, and (iii) to estimate SOC changes due to land use
change.
205
2. Materials and methods
2.1. Study area
The study was conducted in the Vale dos Vinhedos (Vineyard Valley)
which is a wine production region in northeastern Rio Grande do Sul
State (Fig. 1). The study area covered 8118 ha. The climate is classified
as Cfb, subtropical with a mild summer, mean annual temperatures of
17.2 °C and 1736 mm annual rainfall (EMBRAPA, 2008). The dominant
lithology is effusive rocks mostly from the Mesozoic Era (IBGE, 1986).
Lower sequence comprises mostly basalts and diabase dikes, whereas
the upper sequence has predominantly acid effusive rocks such as rhyolite and dacites.
Average soil depth is 150 cm (range from 25 to N250 cm) and many
soils are stony and rocky (average 4.5% of fragments N 20 mm in diameter). In the study area, Inceptisols cover about 44%, Ultisols 29% and
Mollisols almost 15% (Fig. 2). Mollisols are mostly present at lower elevations close to valley bottoms in the northern part of the study area.
Soils in the western part of the study area are mainly Argissolos (Ultisols
and Alfisols), Chernossolos (Mollisols), and Neossolos (Entisols and
Mollisols). The eastern part has more rugged terrain and the dominant
soils are Neossolos (Entisols) and Cambissolos (Inceptisols), with association of Argissolos (Ultisols and Alfisols), Latossolos (Oxisols) and
Nitossolos (Oxisols and Ultisols) (Flores et al., 2012).
Forest (44%) and vineyard (31%) are the dominant land use in the
study area. Deciduous forest is the main vegetation in plateau rugged
areas, and Araucaria forest in flatter areas (IBGE, 1986).
2.2. Soil and environmental data
The soil data were obtained from the soil survey project “Os Solos do
Vale dos Vinhedos” (Flores et al., 2012). Sample points were selected
along predefined paths representing different landscape units (Flores
et al., 2012). Sampling was done with 163 total pedons, comprising
580 soil horizons. The soils were analyzed following Brazilian standard
methods (Santos et al., 2006): SOC analysis by Walkley–Black wet
oxidation.
Additionally, in 2014, samples were obtained from 10 pedons (34
horizons) for an estimate of soil bulk density of the Flores et al. (2012)
soil survey, allocated by contrasting land uses (vineyard, forest/planted
forest, pasture, arable crops, and fallow) and soil classes. The 10 measured bulk density were used to evaluate three pedotransfer functions,
which were chosen based on studies that include data from subtropical
Fig. 1. Study area (Vale dos Vinhedos) in Rio Grande do Sul, Brazil (8118 ha) and location of the 163 pedons and 10 bulk density pedon sampling points.
206
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Fig. 2. Land use and soil taxonomy map of Vale dos Vinhedos in Rio Grande do Sul, Brazil. Percentages of different land use and soil order classes in parentheses.
soils. Table 1 lists measured bulk density, pedotransfer functions, and
validation using root mean square error (RMSE).
Based on the lower value of RMSE (0.11), the simplified equation of
Benites et al. (2007) — Eq. (2) in Table 1 — was chosen to extrapolate the
bulk density for the whole dataset, producing 163 bulk density estimates. This function was developed from a large compilation of pedons
from the Brazilian soil survey database maintained by EMBRAPA
(Empresa Brasileira de Pesquisa Agropecuária) that include pedons in
Rio Grande do Sul State (Tornquist et al., 2009a; Benites et al., 2007).
Once the bulk density was calculated, the values were splined to derive
bulk density for the 5 GlobalSoilMap standard depths. These values
were then attributed to each map unit of Flores et al. (2012) soil map
(scale 1:10.000) considering the reference soil profiles, extrapolating
then to the whole study area.
On SOC concentration and soil depth predictions the following data
layers from Flores et al. (2012) were used: 5 × 5 m grid resolution DEM,
a soil map (scale 1:10,000) and orthorectified aerial imagery. The DEM
was upscaled to 15 m grid cell size. The original soil legend of the
Flores et al. (2012) survey, published according to the Brazilian soil classification (SiBCS), was converted to Soil Taxonomy (12th ed, 2014)
using pedon data (clay content, pH, thickness, carbon content, texture,
color, clay skins and drainage) and additional guidance from the correlation table proposed by Anjos et al. (2012).
A land use map was made using the orthorectified mosaic of aerial
images from November 2005 (Flores et al., 2012). Initially, a supervised
classification was performed after the images were filtered 3 times
(3 × 3, 5 × 5, 7 × 7) using the mean. The supervised classification identified land uses for approximately 50% of the area particularly in the forested areas. Land use in the other half area was delimited manually. The
final land use map contains 8 classes namely vineyard, forest, planted
forest, pasture, arable crops, fallow, building and water bodies. Building
and water bodies were masked.
A set of terrain attributes was derived from the DEM including Slope,
Aspect, Valley Depth, Topographic Wetness Index, Overland Distance to
Channel Network and others. A map with 13 landform classes was made
in LandMapR software using the DEM (MacMillan, 2003). The covariates used for predicting the SOC levels and soil depth are presented in
Table 2.
2.3. Prediction models
Following GlobalSoilMap specification (Arrouays et al., 2014) until
1 m depth, equal area splines were used to harmonize the SOC concentration and bulk density data for 5 depth intervals: 0–5, 5–15, 15–30,
30–60, and 60–100 cm. The smoothing parameter lambda chosen was
0.1 (Malone et al., 2009).
Table 1
Bulk density (t/m3) for different land use and soil depths (cm), obtained from field measurements (10 soil pits) and pedotransfer functions.
Measured values
Depth 1
Depth 2
Depth 3
Depth 4
Depth 5
Vineyard
Vineyard
Vineyard
Vineyard
Forest
Forest
Planted Forest
Pasture
Arable Crops
Fallow
1.17 (11 cm)
1.14 (7 cm)
1.13 (9 cm)
1.16 (13 cm)
0.97 (25 cm)
1.02 (20 cm)
1.09 (15 cm)
1.15 (10 cm)
1.10 (7 cm)
1.29 (40 cm)
1.20 (20 cm)
1.17 (16 cm)
1.21 (34 cm)
1.35 (35 cm)
1.07 (44 cm)
1.08 (45 cm)
1.27 (50 cm)
1.16 (33 cm)
1.55 (30 cm)
1.33 (59 cm)
1.22 (35 cm)
–
1.22 (60 cm)
1.17 (60 cm)
1.13 (63 cm)
1.28 (75 cm)
1.40 (82 cm)
1.25 (51 cm)
1.44 (45 cm)
1.21 (94 cm)
–
–
1.25 (81 cm)
–
1.23 (85 cm)
–
1.33 (124 cm)
–
1.28 (73 cm)
1.16 (118 cm)
–
–
–
–
–
–
–
–
–
–
Pedotransfer functionsa
(1) pm ¼ 1:35 þ 0:0045 sand þ 6 10
100
pb ¼ OMð%Þ
100−OMð%Þ
Þþð
Þ
ðp
p
OM
−5
2
ð44:7−sandÞ þ 0:060 log depth
Reference
RMSE
Tranter et al. (2007)
0.16
Benites et al. (2007)
Benites et al. (2007)
0.11
0.13
m
(2) pb = 1.5688 − 0.0005 ∗ clay − 0.009 ∗ OC
30–30 cm : pb ¼ 1:5544−0:0004 clay−0:01 OC þ 0:0067 SB
(3)
30–100 cm : pb ¼ 1:5674−0:0005 clay−0:006 OC þ 0:0076 SB
OC (g/kg): organic carbon; SB (cmolc/kg) — sum of basic cations (Ca2+, Mg2+ and K+); clay (g/kg).
a
pb = bulk density (g/cm3); pm: mineral bulk density (g/cm3); pOM = organic matter bulk density = 0.224 g/cm3; sand (dag/kg); depth (cm).
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
207
Table 2
Variables used in the prediction of SOC content (g/kg) and soil depth of the study area in Vale dos Vinhedos in Rio Grande do Sul, Brazil.
Variables
Data descriptions
Type
Mean (min–max)
Soil carbon
Digital elevation model — 15 m
Coordinate X
Coordinate Y
Slope
Aspect
Analytical hillshading
TWI
LS factor
Vertical distance to channel network
Valley depth
Slope height
Normalized height
Mid slope position
Flow direction
MRVBF
Overland flow distance to channel network
Direct insolation
Soil order
Land use
Convexity
Topographic position index (TPI)
Mass balance index (MBI)
Plan curvature
Vector ruggedness measure (VRM)
LandMapR
Elevation above mean sea level
UTM latitude
UTM longitude
Local hill slope gradient
Slope aspect
Angle between the surface and the incoming light beams
Topographic wetness index
Slope length factor
Altitude above channel network
Relative position of the valley
Vertical distance from the base of the slope to the crest
Height position within a reference area
Cover the warmer zones of slopes
Direction of the flow
Identifies the depositional areas
Distance from non-channel cells to channel cells
Potential incoming solar radiation
Soil order map
Land use map
Terrain surface convexity
Compare elevation of each cell to the neighborhood
Balance between soil mass deposited and eroded
Curvature in a horizontal plane
Measures terrain ruggedness
Landform classification
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Numeric
Categorical
Categorical
Numeric
Numeric
Numeric
Numeric
Numeric
Categorical
541.49 (206.15–723.05)
445052 (438242–451863)
6770978 (6765083–6776873)
13.85 (0–81.01)
180 (0–360)
0.93 (0–2.74)
3.12 (0.27–8.76)
3.71 (0–95.9)
26.86 (0–259.84)
24.48 (0.36–275.18)
24.91 (0.03–309.36)
0.49 (0–1)
0.52 (0–1)
35.06 (1–255)
0.21 (0–4.92)
204.24 (0–1385)
3.29 (0–5.71)
6 classes
6 classes
0.51 (0.26–0.78)
−0.05 (−11.14 to 21.97)
0.16 (−0.81 to 1.61)
0 (−0.16 to 0.31)
0.01 (0–0.12)
12 classes
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
The splined data were randomly split into 75% (122 pedons) for
training the model, and 25% (41 pedons) for validation. The training
data were used to predict SOC concentrations and all the pedons were
used to predict soil depth. Four different regression models were tested:
Multiple Linear Regression (MLR), Stepwise Multiple Linear Regression
(SMLR), Cubist, and Random Forest.
In MLR, each independent variable is weighted by the regression to
ensure maximal prediction from the set of independent variables
(Hair et al., 2009). The weights denote relative contribution of the independent variables and facilitate to know the influence of each variable.
However, correlation among independent variables needs to be considered. In SMLR, each variable is considered to be included prior to developing the equation. The independent variable with the greatest
contribution is added first, followed by the variables selected based on
their incremental contribution over the variables already in the equation (Hair et al., 2009). The Cubist model is based on the M5 algorithm
of Quinlan (1992). The M5 algorithm builds tree-based models, which
may have multivariate linear models at their leaves (Quinlan, 1992). It
first partitions the data into subsets within which their characteristics
are similar with respect to the target variable and the covariates.
There are several rules arranged in hierarchy. The Random Forest is an
ensemble learning method for classification (and regression) that operate by constructing a multitude of decision trees at training time which
are later aggregated to give one single prediction for each observation in
a dataset. For regression, the prediction is the average of the individual
tree outputs (Breiman, 2001; Malone, 2013).
Based on similarity of results with the original values (Fig. 3), MLR
proved to be the most robust model to predict SOC concentration and
it was chosen to model SOC concentration and soil depth. Then, two
sets of MLR models were implemented, one set for the SOC concentration (5 models, one for each depth) and one for the soil depth. Residual
values (the difference between predicted and observed) were calculated for each model, and spatial relation was modeled with variograms.
Kriging of the residuals was performed for the entire area, and the
results were added to MLR estimation. The relative importance of
the variables for each model was estimated based on absolute value of
t-statistics. The final results for SOC concentration maps were refined
replacing negative values by zero.
The soil depth map had values ranges between 0 and 250 cm. The
map was sliced into 5 layers: 0–5 cm, 5–15 cm, 15–30 cm, 30–60 cm,
Soil depth
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
60–100 cm, creating 5 sets of thickness data. The thickness data were
used to calculate SOC stocks, by each depth intervals.
The gravel and stone contents were obtained from the 163 pedons
(Flores et al., 2012) and the distribution by depth was estimated by
equal area splines. The values were extrapolated to the entire area
through reference profiles of soil map units (Flores et al., 2012).
To calculate SOC stocks in t/ha, SOC concentrations in mass fraction
were multiplied by bulk density previously calculated and mapped
(Section 2.2) and thickness for each depth, and corrected for gravel
and stone contents, according to the following equation:
SOC
h g i
ton
g
thickness
½
cm
=10
¼
SOC
BD
3
ha
kg
cm
gravels ½%
1−
:
100
ð1Þ
To compare SOC stocks in soils under different land use and soil
types, the results needed to be corrected by mass, avoiding carbon
stock variation due to bulk density changes. The cumulative mass approach should be preferred as the basis for carbon stock accounting on
a fixed mass per unit area (Minasny et al., 2013). The approach from
Gifford and Roderick (2003) was used to calculate the cumulative
mass and SOC stocks down to 1 m profile. This approach corrects SOC
stocks using a reference cumulative mass. Soil mass of the forest areas
were chosen as reference, as represent mass of soils under natural vegetation, and were calculated by the measured bulk density splined and
the respective thickness. The reference mass by interval depth were
4.95 g/cm2 for 0–5 cm, 9.9 g/cm2 for 5–15 cm, 15.15 g/cm2 for 15–
30 cm, 33.6 g/cm2 for 30–60 cm and 47.6 g/cm2 for 60–100 cm. For
the whole area, the soil mass for each depth was calculated by the
bulk density maps and the thickness layers derived from the soil
depth map. Then, the reference soil mass, the soil mass for each depth
of the entire study area, and the previously calculated SOC stocks were
each one cumulatively summed.
The cumulative corrected SOC stocks to the entire area, for each
depth, were calculated through the equation applied to each pixel as
follows:
cs ðt Þ ¼ cs ðza Þ þ
cs ðzb Þ−cs ðza Þ
ðms ðt Þ−ms ðza ÞÞ
ms ðzb Þ−ms ðza Þ
ð2Þ
208
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Fig. 3. a) Example of distribution of predicted × observed values, depth 30 to 60 cm, and b) validation of SOC concentration prediction for all depth intervals, by 4 different
methods.
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
209
Fig. 4. Histograms and variograms of residuals (observed–predicted), from SOC concentration and depth predictions.
where cs(t) is the value of cumulative SOC stocks corrected by mass;
cs(za) and ms(za) are the value of cumulative SOC stocks and mass, respectively, from the lower boundary of the layer above it; cs(zb) and
ms(zb) are the cumulative SOC stocks and mass of the lower boundary
of the current layer; ms(t) is the cumulative soil mass from the lower
depth of the reference layer.
The SOC stocks for each interval depth was calculated by subtracting
the cumulative SOC stocks of the lower and upper limit from respective
layer.
values. RMSE correspond to root mean square error, ME to the mean
error, and CCC to the Lin's Concordance Correlation Coefficient. The R2
was obtained directly from the model in R, whereas other parameters
were calculated as follows:
ME ¼
1 Xn
^zðxi Þ−zðxi Þ
1¼1
n
RMSE ¼
2.4. Prediction evaluation
CCC ¼
The SOC concentration models were validated with 25% of the data,
and the soil depth model with the whole dataset, using 4 statistical parameters: RMSE, ME, R2 and CCC. The R2 is the coefficient of determination of linear regression, between the observed values and predicted
ð3Þ
rffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffiffi
1 Xn
2
½zðxi Þ−^zðxi Þ
i¼1
n
2 ρ σ ^zðxi Þ σ
σ ^2zðx Þ
i
ð4Þ
zðxi Þ
2
þ σ 2zðxi Þ þ ð^zðxi Þ−zðxi ÞÞ
ð5Þ
where n is the number of the validation sample points, z(xi) is the observed value, ẑ(xi) is the predicted value, σ 2zðxi Þ and σ ^2zðxi Þ are the
210
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Table 3
Descriptive statistics of training, validation, and estimated SOC content and soil depth.
SOC content
Training data
n = 122 points
Validation data
n = 44 points
Estimates
n = 312,790 pixels
0–5 cm
Mean
Median
Min
Max
27.5
23.8
4.6
93.5
24.7
22.7
7.0
61.0
31.5
31.1
0
103.8
5–15 cm
Mean
Median
Min
Max
27.5
23.5
4.7
95.3
24.8
23.0
7.0
61.6
31.6
31.2
0
108.6
15–30 cm
Mean
Median
Min
Max
23.3
19.9
4.6
90.3
21.9
20.7
7.0
59.6
26.5
25.9
0
176
30–60 cm
Mean
Median
Min
Max
12.2
10.1
0
59.5
10.7
9.4
0
40.9
13.1
12.5
0
60.1
60–100 cm
Mean
Median
Min
Max
7.7
6.1
0
59.5
6.4
5.9
0
26.2
9.1
8.6
0
59.5
Soil depth
Mean
Median
Min
Max
n = 163 points
149.4
150
25
250
n = 163 points
149.4
150
25
250
2.6. SOC changes
n = 312,790 pixels
148.7
150
0
250
variances, and ρ is the correlation coefficient between the predictions
and observations. The impact of each variable was measured by the absolute value of t-statistics for each model parameter obtained through
MLR.
2.5. Uncertainty and probability maps
Estimating uncertainty is complex considering all the sources of uncertainty. There are a number of approaches to estimate the uncertainty
and Malone et al. (2011) and Shrestha and Solomatine (2006) suggest
the empirical approach. In this approach, the residuals between
modeled outputs and corresponding observed data are used to formulate prediction intervals (PIs). The uncertainty is expressed in the form
of two quantiles of the underlying distribution of model error (residuals). The PI takes into account all sources of uncertainty and circumvents attempts to separate out the contribution of each source of
uncertainty (Malone et al., 2011; Shrestha and Solomatine, 2006;
Solomatine and Shrestha, 2009). The methodology is independent of
the prediction model structure, as it requires only the model outputs.
Table 4
Validation of the Multiple Linear Regression and regression kriging for predicting SOC content (g/kg) and soil depth (cm).
Soil depth
0–5
5–15
15–30
30–60
60–100
Depthb
Multiple Linear Regression
2a
R
RMSE
0.33
0.33
0.34
0.44
0.34
0.43
13.23
13.36
12.37
6.62
4.77
34.78
a
Regression kriging
a
CCC
R2a
RMSEa
MEa
CCCa
4.89
4.80
3.76
3.04
2.26
0
0.38
0.38
0.43
0.49
0.41
0.59
0.34
0.33
0.35
0.48
0.41
–
12.82
13.00
12.00
5.80
4.44
–
4.09
3.97
3.10
2.44
1.87
–
0.39
0.39
0.45
0.58
0.52
–
ME
a
We used the empirical approach estimating PIs through the residuals of SOC predictions. Between several methods for modeling the distribution of residuals, we chose sequential Gaussian geostatistical
simulations because it is more related to the spatial method used for
SOC prediction.
Firstly, the residuals from MLR prediction of SOC, at each 5 standard
depth, were simulated with 100 iterations and then the outputs were
added back to the predicted SOC concentration. For each predicting
pixel, we considered the two percentiles, lower 5% and upper 95%, covering the 90% PI, as suggested in GlobalSoilMap specifications (Arrouays
et al., 2014). Lower and upper limits were mapped (Fig. 5) and the uncertainty models were evaluated on the 25% validation dataset (Fig. 9).
With the 100 values of SOC concentration, we applied Eq. (1) for
produced SOC stocks and Eq. (2) to correct by cumulative mass. The
results were used to produce maps of probability of total SOC stock
(0–100 cm) that exceed a threshold of 184 t C/ha. The value of
184 t C/ha is based on the averaged SOC stocks under forest for the entire study area. Areas with high probability of exceeding this limit are
likely to have the same SOC stocks as under forest. The number of
times that pixels values exceeded the threshold, between 100, was
counting and recording for producing the maps. The following probabilities were considered for mapping: 20%, 40%, 60% and 80%.
a
R2 = coefficient of determination, RMSE = root mean square error, ME = mean error,
CCC = Lin's Concordance Correlation Coefficient.
b
Depth model used the whole data samples, and the validation was made based on
training data.
SOC changes due to land use changes were estimated using
Projected Natural Vegetation Soil Carbon (PNVSC) approach (Waring
et al., 2014). PNVSC is considered a projected SOC that could be present
today if the area was under natural vegetation.
The PNVSC maps were elaborated re-applying the equations produced by MLR models for SOC concentration (Section 2.3), nevertheless
with the coefficients for land use types other than forest set to zero. The
produced maps are hypothetically representing soil carbon which could
be observed today if the whole study area remained under natural
vegetation. The predicted SOC concentration can now to be compared
with PNVSC by Eq. (6) to estimate SOC changes due to land use change
(e.g. Adhikari and Hartemink, 2015):
SOC changes ¼ SOC predicted –PNVSC:
ð6Þ
Negative SOC change indicates that the soil has less SOC compared to
the projected natural vegetation (forest) whereas positive SOC change
indicate that the soils have accumulated SOC.
3. Results
3.1. SOC prediction and model comparison
While comparing four prediction methods using the training data,
Cubist and Random Forest showed a high R2 (N0.92) and CCC (N0.8)
for SOC prediction at all depths, compared to MLR and SMLR with
lower values (R2 b 0.51 and CCC b 0.64). Similarly, both Cubist and
Random Forest had lower RMSE (b6.4 g/kg) than MLR and SMLR
(RMSE N 6.7), when comparing all the soil depths.
However, when using the validation samples (25% of pedons), MLR
had a higher R2 and CCC and a lower RMSE than the other models
(Fig. 3b). Comparing the distribution of observed and predicted values
(Fig. 3a), MLR had less spread of points. The MLR model suffered from
the higher bias (ME) compared to all other methods. RMSE did not differ
much between methods with Cubist showing the highest RMSE at all
depths.
Based on R2 and CCC values, and considering the RMSE not so different between methods, MLR was the best model to estimate the SOC
concentration. The high bias indicates that MLR might overestimate
the predicted values and, therefore, it should be considered when
interpreting the results. Based on these findings, we assumed that
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
MLR could be the appropriate method for SOC concentration and soil
depth prediction.
After the predictions were made by the MLR models, the distribution
of prediction residuals and their spatial dependence was analyzed and
plotted (Fig. 4). Spatially, the residuals were poorly auto-correlated for
the top three depths (0–5, 5–15, and 15–30 cm), whereas a better
spatial structure was observed below 30 cm soil depth. Residuals of
soil depth prediction were normally distributed with no spatial autocorrelation as suggested by the pure nugget effect of the variogram.
3.2. Evaluation of MLR model for SOC and soil depth prediction
Descriptive statistics of training data, validation data, and the estimates are shown in Table 3. The mean SOC concentration for the validation are slightly lower than for training data. The estimated data have
higher mean, median and maximum values than the training data
which suggests that the MLR model can overestimate SOC concentration. The bias of MLR is depicted in Fig. 3b and in Table 4, showing higher
values at 0–5 cm soil depth and decreasing until depth 60–100 cm. For
the soil depth, the mean of estimated data were similar to training data.
Validation results of the MLR model is shown in Table 4. The R2 between predicted and measured values differed by depth and was
highest at 30–60 cm, with value of 0.44, and CCC of 0.49. For all other
depths, R2 was between 0.33 and 0.34, and values of CCC were between
0.38 and 0.43. The RMSE and ME decreased with increasing soil depth.
When the residuals were added to the MLR predictions, the R2 and
CCC increased and RMSE and ME decreased (Table 4).
For the soil depth prediction model, CCC of 0.59, R2 of 0.43, and RMSE
of about 34.8 cm were observed. The high values of R2 and CCC were
probably due to the use of same samples for model training and
validation.
211
3.3. Spatial predictions and variable importance
In general, SOC levels differed by depth, soil order and by land use
type. SOC concentration decreased below 15 cm depth (Table 5 and
Fig. 5). The mean values (Table 5) vary between 5.8 g C/kg, from vineyard areas in Alfisols at 60–100 cm depth, and 43.9 g C/kg, from pasture
areas in Entisols at 15–30 cm depth. Entisols have the highest mean SOC
concentration, 39.1 g C/kg at 5–15 cm depth and Alfisols the lowest,
7.1 g C/kg at depth 60–100 cm (Table 7). Similarly, forest has the highest
mean SOC concentration, 36.1 g C/kg at 5–15 cm depth, and arable crops
the lowest, 6.7 g C/kg, at depth 60–100 cm.
The importance of the variables for SOC concentration prediction
differed by depth. The relative importance of the 15 main variables in
SOC concentration and the soil depth model is presented in Fig. 6. Up
to 30 cm soil depth, the most important variable was Soil Order
(Entisols), coordinate X, Aspect and DEM. Below that soil depth the important variables were as follows: Overland Flow Distance to Channel
Network, Aspect, Soil Order (Entisols and Oxisols), coordinate Y, and
Normalized Height. Overall, the Entisols soil order was a good predictor.
Descriptive statistics of soil depth data and its prediction are shown
in Table 3, and the predicted map in Fig. 7. Soils shallower than 70 cm
occupied 1% of area (81 ha) and most of them were Entisols (65%)
and Mollisols (33%). Soils deeper than 200 cm occupied 5% of area
(439 ha) and most of them were Ultisols (54%) and Mollisols (20%).
Soils between 70 and 200 cm occupied the largest area (94%) and
most of them were Inceptisols (43%), Ultisols (28%), and Mollisols
(16%). The deepest soils were Ultisols (169 cm), followed by Oxisols
(158 cm), Inceptisols (150 cm), Alfisols (142 cm), Mollisols (134 cm)
and Entisols (110 cm). Soil depth increased in the northern part of the
study area and it varied mainly with slope as shallower soils were
found on steeper slopes.
Table 5
Predicted SOC content (g/kg) by soil order and land use types, from the study area in Vale dos Vinhedos in Rio Grande do Sul, Brazil.
Soil order
Land use
0–5 cm
5–15 cm
15–30 cm
30–60 cm
60–100 cm
Alfisol
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
26.1 (±1.4)
27.2 (±5.1)
28.1 (±5.4)
18.8 (±6.2)
–
20.5 (±5.3)
41.3 (±0.7)
37.9 (±8.7)
43.1 (±8.7)
39.5 (±8.2)
30.8 (±5.3)
31.5 (±6.9)
29.2 (±4.9)
33.6 (±6.3)
37.0 (±7.0)
33.2 (±6.4)
24.9 (±4.1)
27.4 (±7.0)
27.5 (±9.3)
33.7 (±7.4)
37.0 (±8.5)
32.4 (±11.3)
19.7 (±3.2)
29.4 (±8.9)
32.1 (±4.8)
38.6 (±3.3)
40.2 (±6.9)
34.2 (±4.6)
–
33.5 (±4.7)
21.6 (±6.7)
27.7 (±5.8)
30.8 (±7.1)
25.5 (±6.9)
17.5 (±3.7)
21.6 (±6.9)
26.0 (±1.4)
26.7 (±5.2)
27.9 (±5.5)
19.0 (±6.1)
–
20.2 (±5.4)
41.7 (±0.7)
38.0 (±8.9)
43.7 (±8.9)
40.4 (±8.3)
31.2 (±5.4)
31.7 (±7.1)
29.3 (±5.0)
33.2 (±6.3)
37.0 (±7.1)
33.7 (±6.4)
25.0 (±4.2)
27.3 (±7.1)
27.5 (±9.4)
33.4 (±7.7)
37.3 (±8.7)
32.6 (±11.5)
19.9 (±3.2)
29.3 (±9.1)
32.2 (±5.0)
38.3 (±3.5)
40.1 (±6.9)
34.4 (±4.7)
–
33.5 (±4.7)
21.8 (±6.7)
27.5 (±5.9)
31.0 (±7.3)
26.1 (±7.0)
17.7 (±3.7)
21.7 (±7.1)
19.3 (±2.2)
17.5 (±5.8)
18.8 (±5.7)
18.3 (±5.7)
–
13.7 (±5.5)
36.1 (±0.7)
33.1 (±9.1)
40.9 (±10.4)
43.9 (±8.2)
31.1 (±5.6)
29.1 (±7.8)
24.8 (±5.5)
25.1 (±6.4)
29.7 (±7.0)
34.2 (±6.3)
23.4 (±4.2)
21.9 (±6.9)
22.0 (±8.4)
25.2 (±8.8)
31.4 (±9.0)
31.4 (±10)
19.8 (±4.1)
23.5 (±9.3)
33.4 (±5.5)
34.9 (±4.7)
37.1 (±6.1)
39.9 (±4.9)
–
33.7 (±4.4)
19.6 (±6.1)
22.4 (±6.4)
26.3 (±7.8)
29.0 (±6.6)
19.5 (±3.6)
19.3 (±7.4)
10.2 (±2.4)
10.5 (±5.2)
8.7 (±4.8)
12.0 (±5.0)
–
7.9 (±4.5)
16.2 (±1.2)
17.3 (±5.0)
16.9 (±6.4)
24.7 (±4.5)
16.8 (±6.9)
13.8 (±5.3)
13.4 (±4.9)
13.8 (±5.7)
14.2 (±6.1)
21.8 (±5.3)
17.6 (±4.2)
12.2 (±5.6)
10.6 (±4.5)
12.9 (±5.0)
11.1 (±5.3)
17.3 (±3.0)
12.6 (±3.3)
11.7 (±5.4)
28.8 (±3.6)
29.8 (±3.0)
28.5 (±4.7)
34.6 (±3.7)
–
29.9 (±3.3)
11.9 (±5.1)
13.5 (±4.4)
12.5 (±5.2)
19.5 (±3.7)
16.1 (±3.2)
11.3 (±4.7)
7.8 (±1.6)
7.9 (±4.2)
8.5 (±4.2)
9.2 (±4.6)
–
5.8 (±3.8)
13.0 (±1.0)
11.0 (±4.3)
11.9 (±5.4)
15.4 (±3.7)
9.2 (±5.5)
7.9 (±4.2)
7.8 (±3.8)
8.9 (±5.8)
11.8 (±6.0)
15.3 (±4.6)
12.0 (±4.3)
7.8 (±4.9)
5.7 (±3.5)
6.8 (±4.0)
7.5 (±3.7)
9.8 (±2.4)
7.3 (±2.5)
6.4 (±3.8)
9.1 (±2.8)
13.5 (±2.2)
12.2 (±3.6)
13.4 (±3.3)
–
11.8 (±2.7)
5.6 (±3.4)
8.6 (±3.8)
9.8 (±4.6)
12.5 (±3.0)
9.9 (±2.6)
6.8 (±3.9)
Entisol
Inceptisol
Mollisol
Oxisol
Ultisol
212
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Fig. 5. Prediction of SOC content (g/kg) and lower (5%) and upper limit (95%) for five soil depths of Vale dos Vinhedos in Rio Grande do Sul, Brazil.
Pedotransfer function estimated bulk density for all the pedons, with
average of 1.17 g/cm3 (0–5 cm), 1.18 g/cm3 (5–15 cm), 1.19 g/cm3
(15–30 cm), 1.26 g/cm3 (30–60 cm) and 1.27 g/cm3 (60–100 cm). The
values ranged between 0.54–1.4 g/cm3 (0–5 cm), 0.56–1.4 g/cm3
(5–15 cm), 1.19–1.4 g/cm3 (15–30 cm), 1.26–1.47 g/cm3 (30–60 cm)
and 1.27–1.47 g/cm3 (60–100 cm).
Fig. 8 shows SOC stock maps for each 5 depth, and the total stock for
0–100 cm. Overall, it appeared that the spatial distribution of SOC stocks
was similar to SOC concentration. Values were higher on the valley
banks and bottom valley, which were under forest and with reduced agricultural use. Total SOC stocks were highest in Oxisols (230–280 t C/ha)
and lower in Alfisols (104–143 t C/ha), as in Table 6. Soils under pasture
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
213
Fig. 6. Relative importance of the 15 variables used for predicting SOC content at each soil depth. The importance is calculated based on the absolute value of the t-statistics for each model
parameter (see Table 1 for a description of the variables).
areas had the highest SOC stocks (139–280 t C/ha) and soils under
planted forest areas the lowest SOC stocks (116–174 t C/ha). Oxisols
under pasture areas had the highest SOC stocks (280 t C/ha) and Alfisols
under vineyard the lowest (104 t C/ha).
3.4. Uncertainty and probability maps
For uncertainty of SOC concentrations prediction, calculated by empirical approach and mapped (Fig. 5), the averages for the lower limit of
Fig. 7. Soil depth of the study area in Vale dos Vinhedos in Rio Grande do Sul, Brazil.
214
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Fig. 8. Estimation of SOC stocks (t C/ha) of the study area in Vale dos Vinhedos in Rio Grande do Sul, Brazil.
prediction decreased from 10.5 g C/kg at 0–5 cm soil depth to 1.5 g C/kg
at 60–100 cm depth. The means for upper prediction limit decreased
from 53.8 g C/kg at 0–5 cm soil depth to 19.4 g C/kg at 60–100 cm soil
depth. A similar trend was found for the difference in the lower and
upper limits.
The uncertainty values of nine sample points, from the validation
dataset (25% of pedons), are shown in Fig. 9. The blue line represents estimated value, and red lines represent the low (left) and the upper limit
(right) for the 5 depths. Bars represent the splined SOC values, harmonized by depth of GlobalSoilMap. The prediction intervals are higher
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
215
Table 6
Calculated SOC stocks (t C/ha) by soil order and land use types for the study area in Vale dos Vinhedos in Rio Grande do Sul, Brazil.
Soil order
Land use
0–5 cm
5–15 cm
15–30 cm
30–60 cm
60–100 cm
Total
0–100 cm
Alfisol
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
Arable crops
Fallow
Forest
Pasture
Planted forest
Vineyard
13 (±1)
12 (±2)
11 (±3)
8 (±3)
–
9 (±2)
17 (±1)
14 (±4)
16 (±4)
14 (±4)
12 (±3)
12 (±3)
13 (±3)
14 (±3)
15 (±4)
14 (±4)
11 (±3)
11 (±3)
11 (±3)
12 (±3)
11 (±4)
11 (±3)
7 (±2)
11 (±4)
16 (±2)
19 (±2)
20 (±3)
17 (±3)
–
17 (±2)
10 (±3)
13 (±3)
14 (±3)
12 (±3)
8 (±2)
10 (±3)
25 (±2)
23 (±4)
23 (±5)
16 (±6)
–
17 (±5)
34 (±3)
28 (±8)
33 (±8)
28 (±8)
24 (±6)
23 (±6)
26 (±6)
29 (±7)
31 (±8)
29 (±8)
22 (±5)
23 (±7)
22 (±6)
24 (±6)
22 (±9)
23 (±6)
14 (±5)
21 (±8)
32 (±5)
38 (±3)
40 (±7)
33 (±5)
–
33 (±5)
21 (±6)
26 (±6)
28 (±7)
24 (±6)
17 (±4)
20 (±6)
30 (±3)
26 (±7)
27 (±7)
25 (±9)
–
20 (±7)
45 (±4)
40 (±10)
51 (±15)
49 (±12)
37 (±9)
35 (±9)
35 (±9)
35 (±9)
40 (±10)
46 (±10)
32 (±8)
30 (±9)
27 (±9)
29 (±9)
30 (±11)
34 (±8)
21 (±7)
27 (±12)
50 (±8)
53 (±7)
56 (±9)
59 (±9)
–
51 (±7)
29 (±8)
34 (±9)
38 (±10)
41 (±9)
28 (±6)
28 (±10)
40 (±7)
39 (±17)
36 (±14)
45 (±15)
–
30 (±14)
46 (±10)
51 (±16)
58 (±28)
71 (±28)
47 (±30)
42 (±22)
47 (±15)
48 (±18)
51 (±19)
73 (±18)
55 (±16)
42 (±17)
29 (±12)
42 (±18)
45 (±17)
51 (±12)
42 (±10)
38 (±18)
95 (±12)
100 (±10)
95 (±15)
113 (±14)
–
100 (±11)
43 (±16)
50 (±14)
49 (±16)
70 (±13)
56 (±10)
42 (±16)
34 (±9)
38 (±19)
39 (±19)
45 (±19)
–
29 (±18)
54 (±10)
37 (±18)
36 (±20)
50 (±23)
28 (±22)
28 (±18)
40 (±18)
43 (±27)
52 (±26)
72 (±22)
54 (±18)
38 (±21)
22 (±13)
30 (±19)
36 (±17)
36 (±18)
33 (±11)
27 (±16)
37 (±14)
59 (±10)
53 (±18)
58 (±15)
–
51 (±13)
31 (±16)
44 (±18)
47 (±21)
64 (±14)
53 (±13)
36 (±19)
143 (±18)
137 (±46)
135 (±43)
139 (±50)
–
104 (±40)
197 (±15)
170 (±39)
194 (±57)
212 (±54)
147 (±60)
140 (±44)
160 (±44)
170 (±55)
189 (±56)
235 (±55)
174 (±43)
144 (±49)
111 (±38)
137 (±44)
144 (±43)
155 (±36)
116 (±27)
124 (±49)
230 (±38)
268 (±30)
263 (±49)
280 (±40)
–
251 (±33)
135 (±44)
167 (±44)
176 (±50)
212 (±39)
162 (±29)
136 (±47)
Entisol
Inceptisol
Mollisol
Oxisol
Ultisol
in upper layers than in lower layers. Of the 41 validation samples the following number were within prediction intervals: 36 for 0–5 cm depth,
34 for 5–15 cm depth, 34 for 15–30 cm depth, 38 for 30–60 cm depth,
and 39 for 60–100 cm soil depth. More than 90% of the validation samples were within the prediction intervals derived from residuals with
higher spatial covariance (30–60 cm and 60–100 cm).
For SOC stocks, the probability maps (Fig. 10) show areas where the
SOC stock exceeds the threshold value at 20, 40, 60 and 80% probabilities. The probability for SOC stocks exceeding the limit is highest in
the valley bottoms and in the eastern part of study area. There is an
80% probability of SOC stocks to exceed 184 t C/ha in about 13%
(1029 ha) of the area.
3.5. SOC changes
The mean values of SOC predictions and PNVSC values are given in
Table 7 where the data were aggregated by soil order and land use.
Areas where SOC has been lost as compared to the same soils under forest are given in bold. SOC has been lost at 0–5 and 5–15 cm soil depth for
all soil orders and land use types (except forest which was used as a reference). This loss is also observed at 15–30 cm and 60–100 cm depth,
except for Oxisols and pasture. At 30–60 cm soil depth SOC levels has
been increased in all soil orders and land use types. The maps of
PNVSC and SOC changes are given in Fig. 11.
4. Discussion
This study predicted SOC concentration and SOC stocks in a subtropical area under different land use and a range of soil orders. The impact
of land use on soil C was evaluated by comparing the SOC concentration
under current use with a projected SOC that could be present today if
the area was under natural vegetation. In this discussion, we shall
focus on the methods of prediction, the effect of the variables used for
prediction, and the distribution of SOC under different land uses and
soil types.
4.1. Prediction model
The different methods tested for regression showed that model
evaluation it's more reliable when using a separate validation dataset.
Predicted values might be very similar to observed values, when considering the training model. This model may overfit the data and the performance can be poor using validation data. Minasny and McBratney
(2013), observing the behavior of a random forest model, concluded
that it can easily overfit the data. In our study, the Cubist and Random
Forest models seem to overfit the data, whereas MLR produced estimation closer to validation data.
SOC concentrations were predicted based on regression kriging
Model (MLR and kriging of residuals). The prediction showed the variation in SOC concentration spatially and by depth, land use and soil order.
The model explained only part of the variation and when comparing the
estimated mean, median and maximum values, our estimation from the
model produced slightly higher SOC concentration than training data.
This can be explained by the biased estimate when using a nonprobability sample to calibrate the model or also some regions of the
feature space to be over or under-represented in the training data.
The values of validation parameters such as R2 and CCC were higher
for 30–60 cm soil depth and were lower at other depth intervals. The
216
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Fig. 9. Examples of uncertainty prediction intervals, for SOC levels, of 9 independent validation points. Predicted SOC values are shown in blue, and the lower (5%) and upper limit (95%) in
red. Bars represent the SOC values of validation points obtained from spline functions, and harmonized by GlobalSoilMap depths. (For interpretation of the references to color in this figure
legend, the reader is referred to the web version of this article.)
validation results, in Table 4, are comparable to most recent studies
predicting SOC. For example, on temperate areas, Adhikari et al.
(2014) found the model could explain 43% of variation in validation
data, whereas Malone et al. (2009) found R2 values of validation points
ranging between 20% and 27%. Other studies present similar results
(Brogniez et al., 2014; Collard et al., 2014; Forges et al., 2014;
Wiesmeier et al., 2014).
The soil depth model could explain 43% of the variation, using all
data for estimation and validation. The soil depth map followed the topographic variation, showing the deeper soils in valley bottom. The calculated bulk density varied between 0.54 and 1.47 g/cm3 and were
similar to the values found by Tornquist et al. (2009a), between 0.4
and 1.4 g/cm3.
4.2. Importance of predictor variables
The relative importance of each variable was evaluated by absolute
t-values. The t-value is model dependent, which means that if two or
more variables are correlated with SOC concentration, and also correlated with each other, then only one variable may appear with the high tvalue.
We noted that variable importance differed by soil depth. Up to
30 cm soil depth, the covariates Soil Order, coordinate X, Aspect and
DEM were good predictors. Soil Order (Entisols) contributed mainly
due its consistent higher SOC values (Table 5). There was a decrease
in SOC concentration towards the west (Fig. 5) and hence coordinate
X was important to identify this variation in east–west direction.
There was a higher SOC concentration in the soils of the north in the valley bottom, and coordinate Y identifies this variation. In correlation
analysis, it was noted that Y has a correlation of − 0.47 with X, which
is fairly high compared to other covariates. Both coordinates could explain the spatial variation of SOC concentration, although only X showed
high t-value, and to separate individual effect in prediction is not
straightforward (Hair et al., 2009). The north-facing slopes receive
more solar radiation, and as a result possibly enhanced SOC decomposition and lower SOC levels. This effect can be seen at slightly higher SOC
values in the northeast (slope south-facing) compared to the southwest
(slope north-facing). This variation could be identified by the Aspect
covariate.
At lower elevation, temperatures increases and likely the soils contain less carbon due to higher rates of decomposition. However, the elevation was a proxy for deposited material and areas at lower elevation
had deeper soils with more SOC. There was a relatively high and negative correlation (−0.55) between DEM and Valley Depth. Only DEM is
showed with high t-value, but both explain the SOC variation related
with elevation.
For the layers below 30 cm soil depth the covariates Overland Flow
Distance, Aspect, Soil Order, coordinate Y, and Normalized Height
were important predictors for SOC concentration. Overland flow distance to channel network indicate that the SOC concentration is higher
closer to channel network, possibly because of organic material deposits
under dense vegetation. Libohova et al. (2014) found that areas with
water accumulation for longer time periods stored 50–68% more total
SOC compared to drier areas. Noticeable influence of soil orders covariates (Entisol, Oxisol or Inceptisol) in SOC prediction was found up to
60 cm depth but not below this depth. The coordinate Y is consistent
with the valley bottom in north direction. The Normalized Height indicates the height relatively to the highest and lowest position within an
area (Dietrich and Böhner, 2008) and this covariate correlates with
Overland Flow Distance to Channel Network (0.63).
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
217
Fig. 10. Maps of different probabilities that the soil contain at least 184 ton SOC/ha in Vale dos Vinhedos in Rio Grande do Sul, Brazil.
For prediction of soil depth, Soil Order (Entisol, Mollisol and Ultisol)
and Valley Depth proved good predictors. The Entisols are shallower
soils (mean depth 110 cm) and Mollisols and Ultisols are the deeper
soils. Although Oxisols are also deep soils, it had no significant impact
on the soil depth model possibly because of the limited number of
samples.
4.3. SOC concentration and stocks
The SOC concentration predicted for soils under forest and pasture differed by depth. In the upper layers, soils under forest had
higher values whereas soils under pasture had more SOC with
depth (Tables 5 and 7). Forest has larger amounts of litter and
Table 7
Predicted SOC content and Projected Natural Vegetation Soil Carbon (PNVSC), by soil order and land use. Figures in bold indicate that SOC was lost based on the PNVSC approach (SOC
content predicted — PNVSC).
SOC and PNVSC (g/kg) — mean values (±standard deviation)
Soil order
0–5 cm
PNVSC
5–15 cm
PNVSC
15–30 cm
PNVSC
30–60 cm
PNVSC
60–100 cm
PNVSC
Alfisol
Entisol
Inceptisol
Mollisol
Oxisol
Ultisol
24.2 (±6.5)
38.7 (±9.7)
32.3 (±8.3)
35.0 (±9.2)
35.1 (±6.1)
26.4 (±8.1)
27.0 (±5.0)
42.1 (±6.6)
35.9 (±6.4)
36.6 (±6.0)
38.2 (±3.1)
29.7 (±5.8)
23.9 (±6.6)
39.1 (±10.0)
32.2 (±8.4)
35.2 (±9.4)
35.1 (±6.1)
26.5 (±8.2)
26.8 (±5.0)
42.6 (±6.7)
35.9 (±6.5)
36.8 (±6.1)
38.1 (±3.1)
29.9 (±5.8)
16.2 (±6.1)
36.4 (±11)
26.0 (±7.9)
29.3 (±9.7)
35.7 (±5.7)
23.0 (±8.1)
17.6 (±3.8)
38.5 (±5.9)
28.0 (±5.2)
29.9 (±5.3)
35.5 (±4.0)
24.8 (±4.9)
8.4 (±4.7)
15.9 (±6.2)
13.5 (±6.0)
11.4 (±5.3)
30.3 (±4.4)
12.4 (±5.1)
7.2 (±2.8)
15.5 (±4.8)
12.6 (±4.7)
11.0 (±3.5)
26.9 (±3.0)
11.3 (±3.5)
7.1 (±4.2)
10.5 (±5.3)
9.9 (±5.8)
7.3 (±3.8)
11.8 (±3.3)
8.5 (±4.4)
7.3 (±2.7)
10.8 (±4.0)
10.3 (±4.6)
7.8 (±2.6)
11.7 (±1.8)
8.9 (±3.0)
Land use
Arable Crops
Fallow
Forest
Pasture
Planted Forest
Vineyard
25.4 (±7.8)
30.9 (±7.2)
35.9 (±6.5)
30.1 (±8.5)
23.8 (±6.0)
26.0 (±7.9)
29.5 (±4.3)
32.2 (±3.9)
35.9 (±6.5)
32.8 (±4.2)
36.6 (±2.5)
33.9 (±4.8)
25.5 (±7.9)
30.7 (±7.3)
36.1 (±7.0)
30.5 (±8.6)
23.9 (±6.1)
26.0 (±8.0)
29.5 (±4.3)
32.3 (±3.9)
36.1 (±7.0)
32.8 (±4.2)
36.6 (±2.5)
33.9 (±4.9)
23.3 (±8.1)
24.2 (±7.4)
30.2 (±7.2)
32.3 (±8.1)
23.5 (±5.6)
21.8 (±8.0)
24.4 (±3.7)
25.9 (±3.5)
30.2 (±7.2)
26.3 (±3.8)
29.5 (±2.4)
26.6 (±4.5)
15.2 (±8.1)
13.7 (±5.1)
13.1 (±5.2)
21.1 (±5.8)
16.9 (±4.6)
12.0 (±5.5)
13.9 (±3.1)
11.8 (±3.1)
13.1 (±5.2)
12.7 (±2.8)
14.2 (±2.6)
11.4 (±3.9)
6.7 (±3.7)
8.6 (±4.7)
10.1 (±4.7)
13.3 (±4.1)
10.8 (±4.3)
7.4 (±4.4)
9.1 (±2.0)
9.3 (±3.0)
10.1 (±4.7)
9.5 (±2.1)
11.7 (±2.6)
8.9 (±3.3)
218
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Fig. 11. Maps of Projected Natural Vegetation Soil Carbon (PNVSC) and changes in SOC in Vale dos Vinhedos in Rio Grande do Sul, Brazil.
organic material, which is incorporated into the soil. Aboveground
input and relatively low rates of decomposition generally increases
topsoil SOC levels compared to grasslands (Don et al., 2011; Guo
and Gifford, 2002; Jobbágy and Jackson, 2000). For pasture, deep
roots contribute to the accumulation of SOC with depth (Guo and
Gifford, 2002).
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
219
Table 8
SOC stocks (t/ha) under different land use and in different soils in various parts of the world.
Location
Land use, soil type
Brazil — Distrito Federal
Brazil — Rio Grande do Sul
Tillage — 6 treatments
100 cm
3 different crop rotations in:
Zero till
100 cm
Conventional tillage
Rotations with intercropped or cover–crop legumes in:
Zero till
100 cm
Conventional tillage
Alfisols
30 cm
Entisols
Inceptisols
Mollisols
Oxisols
Ultisols
Mixed Ombrophyllous forest
30 cm
Forest on Arenosol
100 cm
Forest on Histosol
Cropland (mainly cereals and potatoes)
100 cm
Forest
Grazing
–
100 cm
Forest
100 cm
Pasture
Crops (82 row crops)
Forestland
100 cm
Grassland
Farmland
Forest
50 cm
Agriculture (tea, coffee, maize and banana)
Brazil — Rio Grande do Sul
Brazil — Rio Grande do Sul
Brazil
Brazil — Amazon
Spain — Canalda river basin
USA
USA
China
Rwanda — Rukarara river catchment
Soils under arable crops and vineyard had the lowest SOC concentration and stocks as a result of reduced organic matter input and enhanced decomposition (Elliott, 1986; Sanford, 2014; Schrumpf et al.,
2013), but SOC levels could improve with careful soil management
(Lal, 2006). Soil erosion may decrease SOC stocks in agricultural systems
(Don et al., 2011) whereas leaving the land fallow may increase SOC
levels depending on the length of the fallow. Hartemink (1998) found,
in Papua New Guinea, that SOC concentration changed from 51 g C/kg
to 36 g C/kg after 17 years of sugarcane cultivation.
Planted forests in Vale dos Vinhedos are mostly pinus or eucalyptus,
and the soils generally had a low SOC concentration and SOC stocks. It is
known that coniferous and broadleaf trees can have different carbon accumulation (Guo and Gifford, 2002) but we were not able to distinguish
these forest types. Planted broadleaf trees accumulate SOC levels comparable to natural forests. Soil C stocks under plantation forest could
be restored to the original level under native forest, but it may requires
several decades (Guo and Gifford, 2002; O'Brien and Jastrow, 2013). As
planted forests are harvested there may be considerable soil erosion and
loss of topsoil carbon (Hartemink, 2003).
The SOC concentration and stocks differed by soil order. Until 30 cm
soil depth, Entisols have a higher SOC concentration but with depth
Oxisols have the highest SOC concentration. Most Entisols (58%) are
under forest which explains some of the higher SOC concentrations.
Oxisols are deeper soils and have possibility of long-term accumulation
of SOC with depth. Many of the Oxisols are under pasture (16%), whereas
other soil orders have less than 3% of their area under pasture. Pasture
has generally higher SOC accumulation with depth. Alfisols are mostly
under vineyard which can explain their lower SOC levels. About twothird of the Mollisols are under forest, accumulating more SOC in upper
layers. Most of the Inceptisols are under forest (39%) and vineyard (35%).
SOC stocks were calculated and corrected based on equivalent soil
mass (Gifford and Roderick, 2003; Lee et al., 2009; Ellert and Bettany,
1995). We found corrected SOC stocks varying from 104 t C/ha in
vineyards in Alfisols to 280 t C/ha in pasture areas in Oxisols, with an average of 161 t C/ha. Results of SOC stocks for 100 cm depth (Table 6,
Fig. 7) are comparable to other studies (Table 8). This can be attributed
to the relatively high SOC concentrations. About 16% of the SOC
Depth
SOC stocks
(t C/ha)
Reference
171
Jantalia et al. (2007)
Sisti et al. (2004)
175.2
163.8
Boddey et al. (2010)
154–172
132–163
77
66
83
76
77
48
61–128
40
724
63
116
89
345
76.8
74.9
107
143.3
82.4
92.2
295–487
114–169
Tornquist et al. (2009a)
Bernoux et al. (2002)
Batjes and Dijkshoorn (1999)
Simó et al. (2014)
Wills et al. (2014)
Bliss et al. (2014)
Yu et al. (2007)
Wasige et al. (2014)
concentration values between 60 and 100 cm depth exceeded 10 g C/
kg, and considering 40 cm thickness it explains the relative high SOC
stocks with depths. Environmental conditions in the study area favor
SOC accumulation, due the high precipitation and relatively low temperature. SOC stocks average for soils under arable crops is 163 t C/ha,
for fallow is 175 t C/ha, for pasture is 205 t C/ha, vineyard is 150 t C/
ha, for planted forest is 149 t C/ha and 184 t C/ha for soils under forest.
Other studies in Brazil found similar values such the studies by Boddey
et al. (2010), Sisti et al. (2004) and Jantalia et al. (2007) (Table 8).
Tornquist et al. (2009a) found in Rio Grande do Sul State, for SOC
stocks to 30 cm soil depth of non-sandy and non-wet soils, mean values
of 77 t C/ha for Alfisols, 66 t C/ha for Entisols, 83 t C/ha for Inceptisols,
76 t C/ha for Mollisols, 77 t C/ha for Oxisols and 48 t C/ha for Ultisols.
These stocks are comparable to the current study in Vale dos Vinhedos,
based on equivalent soil mass, of 57 t C/ha for Alfisols, 85 t C/ha for
Entisols, 76 t C/ha for Inceptisols, 60 t C/ha for Mollisols, 106 t C/ha for
Oxisols and 67 t C/ha for Ultisols. Bernoux et al. (2002) found for nonsandy or non-wet soils, in areas with mixed forest, SOC stocks
(0–30 cm) between 61 and 128 t C/ha. These values are comparable to
84 t C/ha found in forest areas in Vale dos Vinhedos at the same depth
based on the equivalent soil mass. Wasige et al. (2014), studying SOC
in Rwanda until 50 cm depth, found under forest, stocks ranged
295 t C/ha in Cambisols to 487 t C/ha in Histosols. These values were
not corrected by mass and are higher than the 115 t C/ha found in
Vale dos Vinhedos (Table 6), for forest until 60 cm depth, corrected by
mass. For agriculture areas (main crops are tea, coffee, maize and
banana), the values were between 114 t C/ha in Acrisols (Ultisols) and
169 t C/ha in Ferralsols (Oxisols). These SOC stocks are similar to
found in arable crops (126.3 t C/ha) and vineyard (115 t C/ha) areas in
our study up to 60 cm soil depth.
4.4. Uncertainty and probability maps
It was found that 88% of validation values are within the prediction
intervals. Malone et al. (2011) found similar result using an empirical
uncertainty method based in distribution of prediction errors. However,
for depth with higher spatial covariance of residuals (30–60 cm and
220
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
60–100 cm) more than 90% of the values were within the prediction
intervals. Our results suggest that the methodology adopted to calculate uncertainty depends of the spatial covariance of the residuals.
The limited accuracy may be related to variation in environmental
conditions between the training and validation data, lower spatial
relation found in the most of interval depths, and errors in measures
of the training or validation samples.
The SOC stocks probability maps (Fig. 10) reflect SOC stocks exceeding 184 t C/ha. Such areas are found in valley bottoms due the
sediment accumulation and reduced drainage, and in Entisols,
Mollisols under forest because of higher production of organic material and lower rates of decomposition. The low probability values are
mostly in soils under vineyard or arable crops (mainly Inceptisols
and Ultisols). The maps shows that only about 13% of the area has
80% of probability for exceeding the 184 t C/ha. These areas may
have the same or more SOC than the soils under original land use.
The 20% probability map shows that non-colored areas have 80% of
probability to be able to stock more SOC. About 42% of soils of
study area (3374 ha) could sequester more carbon if occupied by
natural forest.
4.5. Soil C changes
The PNVSC analysis showed that the topsoils could accumulate
more SOC if they were under forest (Table 7) because of increased
organic material addition and reduced decomposition. Below
15 cm depth, soils under pasture have a higher capacity to accumulate SOC which is commonly found (Guo and Gifford, 2002; Lacoste
et al., 2014; Nieder and Benbi, 2008). At interval depth 30–60 cm,
regardless of soil type or land use, the soil accumulates more carbon
than if the soil was under forest. A possible explanation is that there
is storage in carbon in that depth after carbon being translocated
from upper layers.
5. Conclusions
From this research the following can be concluded:
- Up to 30 cm soil depth the primary covariates for prediction SOC
concentration were Entisols, X coordinate, DEM and Aspect.
- With depth, the primary covariates for prediction SOC concentration
were Overland Flow Distance, Aspect, Soil Order, Y coordinate.
- For the prediction of the soil depth, the primary covariates were Soil
Order and Valley Depth.
- Forest accumulates more carbon in upper layers and pasture
accumulates more carbon with depth.
- Oxisols and Entisols accumulate larger contents of SOC. Lower
values for SOC were found in Alfisols, Ultisols, arable crops,
vineyard and planted forest.
- The SOC stocks (down to 100 cm) were on average 166 t C/ha
but varied between 107 t C/ha in vineyards on Alfisols, and
324 t C/ha in fallow areas on Oxisols.
- The PNVSC analysis showed that carbon was lost when land use
changes from natural environment, reducing the potential of
carbon sequestration.
Acknowledgments
We are especially grateful to Carlos Alberto Flores, Reinaldo Oscar
Pötter, Eliana Casco Sarmento, Eliseu José Weber and Heinrich
Hasenack, for the soil survey in Vale dos Vinhedos and for making the
data available. The first author was supported by the CAPES Foundation,
Ministry of Education of Brazil (Process BEX 3095/14-2). We are grateful
to Prof. Budiman Minansny of the University of Sydney who made
useful comments on the draft of this paper, and to two anonymous reviewers for their suggestions that improved this paper.
References
Adhikari, K., Hartemink, A.E., 2015. Digital mapping of topsoil carbon content and changes
in the Driftless Area of Wisconsin, USA. Soil Sci. Soc. Am. J. 79, 155–164. http://dx.doi.
org/10.2136/sssaj2014.09.0392.
Adhikari, K., Hartemink, A.E., Minasny, B., Bou Kheir, R., Greve, M.B., Greve, M.H., 2014.
Digital mapping of soil organic carbon contents and stocks in Denmark. PLoS ONE
9, e105519. http://dx.doi.org/10.1371/journal.pone.0105519.
Angers, D.A., Eriksen-Hamel, N.S., 2008. Full-inversion tillage and organic carbon distribution in soil profiles: a meta-analysis. Soil Sci. Soc. Am. J. 72, 1370–1374.
Anjos, L.H.C., Jacomine, P.K., dos Santos, H.G., de Oliveira, V.A., de Oliveria, J.B., 2012.
Sistema Brasileiro de Classificação de Solos. In: Ker, J.C., Curi, N., Schaefer, C.E.G.,
Vidal-Torrado, P. (Eds.), Pedologia; Fundamentos. SBCS, Viçosa, MG.
Arrouays, D., Grundy, M.G., Hartemink, A.E., Hempel, J.W., Heuvelink, G.B.M., Hong, S.Y.,
Lagacherie, P., Lelyk, G., McBratney, A.B., McKenzie, N.J., Mendonca-Santos, M.D.L.,
Minasny, B., Montanarella, L., Odeh, I.O.A., Sanchez, P.A., Thompson, J.A., Zhang, G.L.,
2014. GlobalSoilMap: toward a fine-resolution global grid of soil properties. Adv.
Agron. 125, 93–134.
Batjes, N.H., Dijkshoorn, J.A., 1999. Carbon and nitrogen stocks in the soils of the Amazon
Region. Geoderma 89, 273–286. http://dx.doi.org/10.1016/S0016-7061(98)00086-X.
Benites, V.M., Machado, P.L.O.A., Fidalgo, E.C.C., Coelho, M.R., Madari, B.E., 2007.
Pedotransfer functions for estimating soil bulk density from existing soil survey
reports in Brazil. Geoderma 139, 90–97. http://dx.doi.org/10.1016/j.geoderma.2007.
01.005.
Berhongaray, G., Alvarez, R., De Paepe, J., Caride, C., Cantet, R., 2013. Land use effects on
soil carbon in the Argentine Pampas. Geoderma 192, 97–110. http://dx.doi.org/10.
1016/j.geoderma.2012.07.016.
Bernoux, M., Carvalho, M. da C.S., Volkoff, B., Cerri, C.C., 2002. Brazil's soil carbon stocks.
Soil Sci. Soc. Am. J. 66, 888–896.
Bliss, N.B., Waltman, S.W., West, L.T., Neale, A., Mehaffey, M., 2014. Distribution of
soil organic carbon in the conterminous United States. In: Hartemink, A.E.,
McSweeney, K. (Eds.), Soil CarbonProgress in Soil Science. Springer, Dordrecht,
pp. 85–93.
Boddey, R.M., Jantalia, C.P., Conceição, P.C., Zanatta, J.A., Bayer, C., Mielniczuk, J., Dieckow,
J., Dos Santos, H.P., Denardin, J.E., Aita, C., Giacomini, S.J., Alves, B.J.r., Urquiaga, S.,
2010. Carbon accumulation at depth in Ferralsols under zero-till subtropical agriculture. Glob. Chang. Biol. 16, 784–795. http://dx.doi.org/10.1111/j.1365-2486.2009.
02020.x.
Breiman, L., 2001. Random forests. Mach. Learn. 45, 5–32.
Brogniez, D., Ballabio, C., van Wesemael, B., Jones, R.A., Stevens, A., Montanarella, L., 2014.
Topsoil organic carbon map of Europe. In: Hartemink, A.E., McSweeney, K. (Eds.), Soil
CarbonProgress in Soil Science. Springer, Dordrecht, pp. 393–405.
Cerri, C.C., Andreux, F., 1990. Changes in organic carbon content in Oxisols cultivated with
sugar cane and pasture, based on 13C natural abundance measurement. Transactions
14th International Congress of Soil Science, Kyoto, Japan, August 1990 vol. IV,
pp. 98–103.
Cerri, C.E.P., Easter, M., Paustian, K., Killian, K., Coleman, K., Bernoux, M., Falloon, P.,
Powlson, D.S., Batjes, N.H., Milne, E., Cerri, C.C., 2007. Predicted soil organic carbon
stocks and changes in the Brazilian Amazon between 2000 and 2030. Agric. Ecosyst.
Environ. 122, 58–72. http://dx.doi.org/10.1016/j.agee.2007.01.008.
Cheng, X.F., Shi, X.Z., Yu, D.S., Pan, X.Z., Wang, H.J., Sun, W.X., 2004. Using GIS spatial
distribution to predict soil organic carbon in subtropical China. Pedosphere 14,
425–431.
Collard, F., Saby, N., de Forges, A.R., Lehmann, S., Paroissien, J.-B., Arrouays, D., 2014. Spatial prediction of soil organic carbon at different depths using digital soil mapping. In:
Arrouays, D., McKenzie, N., Hempel, J., de Forges, A.C. Richer, McBratney, A. (Eds.),
GlobalSoilMap — Basis of the Global Spatial Information Systems. CRC Press,
pp. 181–184.
Conant, R., Puastian, K., Elliot, E., 2001. Grassland management and conversion into grassland: effects on soil carbon. Ecol. Appl. 11, 343–355.
de Souza, E., Hengl, T., Kempen, B., Heuvelink, G., Filho, E.F., Schaefer, C., 2014. Comparing
spatial prediction methods for soil property mapping in Brazil. In: Arrouays, D.,
McKenzie, N., Hempel, J., de Forges, A.C. Richer, McBratney, A. (Eds.), GlobalSoilMap —
Basis of the Global Spatial Information Systems. CRC Press, pp. 267–271.
Dietrich, H., Böhner, J., 2008. Cold air production and flow in a low mountain range landscape in Hessia (Germany). Hambg. Beitr. Zur Phys. Geogr. Landschaftsökologie.
Don, A., Schumacher, J., Freibauer, A., 2011. Impact of tropical land-use change on soil
organic carbon stocks — a meta-analysis. Glob. Chang. Biol. 17, 1658–1670. http://
dx.doi.org/10.1111/j.1365-2486.2010.02336.x.
Ellert, B.H., Bettany, J.R., 1995. Calculation of organic matter and nutrients stored in soils
under contrasting management regimes. Can. J. Soil Sci. 75, 529–538. http://dx.doi.
org/10.4141/cjss95-075.
Elliott, E.T., 1986. Aggregate structure and carbon, nitrogen, and phosphorus in native and
cultivated soils. Soil Sci. Soc. Am. J. 50, 627–633.
EMBRAPA, 2008. Normal Climatológica: Estação Agroclimática da Embrapa Uva e Vinho,
Bento Gonçalves, RS. Período de 1961 a 1990. http://www.cnpuv.embrapa.br/.
Flores, C.A., Pötter, R.O., Sarmento, E.C., Weber, E.J., Hasenack, H., 2012. Os Solos do Vale
dos Vinhedos. EMBRAPA, Brasília, DF. Brazil.
Forges, A.C., Martin, M.P., Saby, N.P.A., Arrouays, D., Martelet, G., Tourlière, B., 2014. A preliminary analysis of topsoil organic carbon contents and stocks spatial distribution in
a region of France (Région Centre). In: Arrouays, D., McKenzie, N., Hempel, J., de
B.R. Bonfatti et al. / Geoderma 261 (2016) 204–221
Forges, A.C. Richer, McBratney, A. (Eds.), GlobalSoilMap — Basis of the Global Spatial
Information Systems. CRC Press, pp. 197–200.
Giasson, E., Clarke, R.T., Inda-Junior, A.V., Merten, G.H., Tornquist, C.G., 2006. Digital soil
mapping using multiple logistic regression on terrain parameters in southern
Brazil. Sci. Agric. 63.
Gifford, R.M., Roderick, M.L., 2003. Soil carbon stocks and bulk density: spatial or cumulative mass coordinates as a basis of expression? Glob. Chang. Biol. 9, 1507–1514.
Guo, L.B., Gifford, R.M., 2002. Soil carbon stocks and land use change: a meta analysis.
Glob. Chang. Biol. 8, 345–360. http://dx.doi.org/10.1046/j.1354-1013.2002.00486.x.
Hair, J.F., Black, W.C., Babin, B.J., Anderson, R.E., 2009. Multivariate Data Analysis. 7th ed.
Prentice Hall.
Hartemink, A.E., 1998. Soil chemical and physical properties as indicators of sustainable
land management under sugar cane in Papua New Guinea. Geoderma 85, 283–306.
http://dx.doi.org/10.1016/S0016-7061(98)00048-2.
Hartemink, A.E., 2003. Soil Fertility Decline in the Tropics: With Case Studies on Plantations. CABI, Wallingford, UK.
Hartemink, A.E., McSweeney, K. (Eds.), 2014. Soil Carbon. Springer, Dordrecht.
IBGE, 1986. Folha SH.22 Porto Alegre e parte das Folhas SH.21 Uruguaiana e SI.22 Lagoa
Mirim. Levantamento de Recursos Naturais. IBGE, Rio de Janeiro.
Jantalia, C.P., Resck, D.V.S., Alves, B.J.R., Zotarelli, L., Urquiaga, S., Boddey, R.M., 2007. Tillage effect on C stocks of a clayey Oxisol under a soybean-based crop rotation in the Brazilian
Cerrado region. Soil Tillage Res. 95, 97–109. http://dx.doi.org/10.1016/j.still.2006.11.005.
Jobbágy, E.G., Jackson, R.B., 2000. The vertical distribution of soil organic carbon and its relation to climate and vegetation. Ecol. Appl. 10, 423–436.
Kirsten, M., Kaaya, A., Klinger, T., Feger, K.-H., 2015. Stocks of soil organic carbon in forest
ecosystems of the Eastern Usambara Mountains, Tanzania. Catena http://dx.doi.org/
10.1016/j.catena.2014.12.027.
Lacoste, M., Minasny, B., McBratney, A., Michot, D., Viaud, V., Walter, C., 2014. High resolution 3D mapping of soil organic carbon in a heterogeneous agricultural landscape.
Geoderma 213, 296–311. http://dx.doi.org/10.1016/j.geoderma.2013.07.002.
Lal, R., 2005. Forest soils and carbon sequestration. For. Ecol. Manag. 220, 242–258. http://
dx.doi.org/10.1016/j.foreco.2005.08.015.
Lal, R., 2006. Enhancing crop yields in the developing countries through restoration of the
soil organic carbon pool in agricultural lands. Land Degrad. Dev. 17, 197–209. http://
dx.doi.org/10.1002/ldr.696.
Lee, J., Hopmans, J.W., Rolston, D.E., Baer, S.G., Six, J., 2009. Determining soil carbon stock
changes: simple bulk density corrections fail. Agric. Ecosyst. Environ. 134, 251–256.
http://dx.doi.org/10.1016/j.agee.2009.07.006.
Libohova, Z., Stott, D.E., Owens, P.R., Winzeler, H.E., Wills, S., 2014. Mineralizable soil organic carbon dynamics in corn–soybean rotations in glaciated derived landscapes of
Northern Indiana. In: Hartemink, A.E., McSweeney, K. (Eds.), Soil Carbon. Springer,
Dordrecht, pp. 259–269.
MacMillan, R.A., 2003. LandMapR Software Toolkit — C++ Version. Users manual.
LandMapper Environmental Solutions Inc., Edmonton.
Malone, B., 2013. Use R for Digital Soil Mapping. Univ. Syd.
Malone, B.P., McBratney, A.B., Minasny, B., Laslett, G.M., 2009. Mapping continuous depth
functions of soil carbon storage and available water capacity. Geoderma 154,
138–152. http://dx.doi.org/10.1016/j.geoderma.2009.10.007.
Malone, B.P., McBratney, A.B., Minasny, B., 2011. Empirical estimates of uncertainty
for mapping continuous depth functions of soil attributes. Geoderma 160,
614–626.
Mendonça-Santos, M.L., Santos, H.G., 2007. The state of the art of Brazilian soil mapping
and prospects for digital soil mapping. In: Lagacherie, P., McBratney, A.B., Voltz, M.
(Eds.), Digital Soil Mapping: An Introductory Perspective. Elsevier, Amsterdam.
Mendonça-Santos, M.L., Dart, R.O., Santos, H.G., Coelho, M.R., Berbara, R.L.L., Lumbreras,
J.F., 2010. Digital soil mapping of topsoil organic carbon content of Rio de Janeiro
State, Brazil. In: Boettinger, D.J.L., Howell, D.W., Moore, A.C., Hartemink, P.D.A.E.,
Kienast-Brown, S. (Eds.), Digital Soil Mapping, Progress in Soil Science. Springer,
Netherlands, pp. 255–266.
Minasny, B., McBratney, A.B., 2013. Jenny, PCA and random forests. Pedometron 33, 10–13.
Minasny, B., McBratney, A.B., Malone, B.P., Wheeler, I., 2013. Digital mapping of soil carbon. Adv. Agron. 118, 1–47. http://dx.doi.org/10.1016/b978-0-12-405942-9.00001-3.
Nieder, R., Benbi, D.K., 2008. Carbon and Nitrogen in the Terrestrial Environment. Springer, Dordrecht.
O'Brien, S.L., Jastrow, J.D., 2013. Physical and chemical protection in hierarchical soil aggregates regulates soil carbon and nitrogen recovery in restored perennial grasslands.
Soil Biol. Biochem. 61, 1–13. http://dx.doi.org/10.1016/j.soilbio.2013.01.031.
Padarian, J., Pérez-Quezada, J., Seguel, O., 2012. Modelling the distribution of organic carbon in the soils of Chile. In: Minasny, B., Malone, B.P., McBratney, A.B. (Eds.), Digital
Soil Assessments and Beyond. CRC Press, pp. 329–333.
221
Quinlan, J.R., 1992. Leaning with continuous classes. In: Adams, A., Sterling, L. (Eds.), Proceedings of AI92, 5th Australian Conference on Artificial Intelligence. World Scientific,
Singapore, pp. 343–348.
Ross, C.W., Grunwald, S., Myers, D.B., 2013. Spatiotemporal modeling of soil organic carbon stocks across a subtropical region. Sci. Total Environ. 461–462, 149–157. http://
dx.doi.org/10.1016/j.scitotenv.2013.04.070.
Rumpel, C., Kögel-Knabner, I., 2011. Deep soil organic matter—a key but poorly understood component of terrestrial C cycle. Plant Soil 338, 143–158. http://dx.doi.org/
10.1007/s11104-010-0391-5.
Sanford, G.R., 2014. Perennial grasslands are essential for long term SOC storage in the
Mollisols of the North Central USA. In: Hartemink, A.E., McSweeney, K. (Eds.), Soil
Carbon. Springer, Dordrecht, pp. 281–288.
Santos, H.G., Jacomine, P.K., dos Anjos, L.H.C., de Oliveira, V.A., de Oliveira, J.B., Coelho,
M.R., Lumbreras, J.F., Cunha, T.J.F., 2006. Sistema Brasileiro de Classificação de Solos.
2nd ed. Embrapa Solos, Rio de Janeiro.
Schrumpf, M., Kaiser, K., Guggenberger, G., Persson, T., Kögel-Knabner, I., Schulze, E.-D.,
2013. Storage and stability of organic carbon in soils as related to depth, occlusion
within aggregates, and attachment to minerals. Biogeosciences 10, 1675–1691.
http://dx.doi.org/10.5194/bg-10-1675-2013.
Shrestha, D.L., Solomatine, D.P., 2006. Machine learning approaches for estimation of prediction interval for the model output. Neural Netw. 19, 225–235. http://dx.doi.org/10.
1016/j.neunet.2006.01.012.
Simó, I., Herrero, C., Boixadera, J., Poch, R., de Forges, A.C. Richer, 2014. Modelling soil organic carbon stocks using a detailed soil map in a Mediterranean mountainous area.
In: Arrouays, D., McKenzie, N., Hempel, J., McBratney, A. (Eds.), GlobalSoilMap — Basis
of the Global Spatial Information Systems. CRC Press, pp. 421–427.
Sisti, C.P.J., dos Santos, H.P., Kohhann, R., Alves, B.J.R., Urquiaga, S., Boddey, R.M., 2004.
Change in carbon and nitrogen stocks in soil under 13 years of conventional or
zero tillage in southern Brazil. Soil Tillage Res. 76, 39–58. http://dx.doi.org/10.1016/
j.still.2003.08.007.
Solomatine, D.P., Shrestha, D.L., 2009. A novel method to estimate model uncertainty
using machine learning techniques: novel method to estimate uncertainty. Water
Resour. Res. 45. http://dx.doi.org/10.1029/2008WR006839.
Thompson, J.A., Kolka, R.K., 2005. Soil carbon storage estimation in a forested watershed
using quantitative soil-landscape modeling. Soil Sci. Soc. Am. J. 69, 1086–1093.
Tornquist, C.G., Giasson, E., Mielniczuk, J., Cerri, C.E.P., Bernoux, M., 2009a. Soil organic
carbon stocks of Rio Grande do Sul, Brazil. Soil Sci. Soc. Am. J. 73, 975. http://dx.doi.
org/10.2136/sssaj2008.0112.
Tornquist, C.G., Mielniczuk, J., Cerri, C.E.P., 2009b. Modeling soil organic carbon dynamics
in Oxisols of Ibirubá (Brazil) with the Century Model. Soil Tillage Res. 105, 33–43.
http://dx.doi.org/10.1016/j.still.2009.05.005.
Tranter, G., Minasny, B., Mcbratney, A.B., Murphy, B., Mckenzie, N.J., Grundy, M., Brough,
D., 2007. Building and testing conceptual and empirical models for predicting soil
bulk density. Soil Use Manag. 23, 437–443. http://dx.doi.org/10.1111/j.1475-2743.
2007.00092.x.
Vasques, G.M., Grunwald, S., Comerford, N.B., Sickman, J.O., 2010. Regional modelling of
soil carbon at multiple depths within a subtropical watershed. Geoderma 156,
326–336. http://dx.doi.org/10.1016/j.geoderma.2010.03.002.
Waring, C., Stockman, U., Malone, B., Whelan, B., McBratney, A.B., 2014. Is percent
“Projected Natural Vegetation Soil Carbon” a useful indicator of soil condition?
In: Hartemink, A., McSweeney, K. (Eds.), Soil Carbon. Springer, pp. 219–227
Wasige, J.E., Groen, T.A.E., Rwamukwaya, B.M., Tumwesigye, W., Smaling, E.M.A., Jetten,
V., 2014. Contemporary land use/land cover types determine soil organic carbon
stocks in south-west Rwanda. Nutr. Cycl. Agroecosyst. 100, 19–33. http://dx.doi.org/
10.1007/s10705-014-9623-z.
Wiesmeier, M., Barthold, F., Spörlein, P., Geuß, U., Hangen, E., Reischl, A., Schilling, B.,
Angst, G., von Lützow, M., Kögel-Knabner, I., 2014. Estimation of total organic carbon
storage and its driving factors in soils of Bavaria (southeast Germany). Geoderma
Reg. 1, 67–78. http://dx.doi.org/10.1016/j.geodrs.2014.09.001.
Wills, S., Loecke, T., Sequeira, C., Teachman, G., Grunwald, S., West, L.T., 2014. Overview of
the U.S. rapid carbon assessment project: sampling design, initial summary and uncertainty estimates. In: Hartemink, A.E., McSweeney, K. (Eds.), Soil Carbon. Springer
International Publishing, pp. 95–104.
Yu, D.S., Shi, X.Z., Wang, H.J., Sun, W.X., Chen, J.M., Liu, Q.H., Zhao, Y.C., 2007. Regional patterns of soil organic carbon stocks in China. J. Environ. Manag. 85, 680–689. http://dx.
doi.org/10.1016/j.jenvman.2006.09.020.
Zhang, P., Shao, M., 2014. Spatial variability and stocks of soil organic carbon in the Gobi
desert of Northwestern China. PLoS ONE 9, e93584.