The purpose of the article is the analysis of Covid-19 impact on Islamic Higher Education (IHE). The following research methods were used in the article: empirical methods, methods of theoretical analysis, questionnaire, and interview. The approaches to online education in IHE Indonesia have been analyzed. The results of the article have a few significant implications for the science and practice of online education and its perspectives on the IHE system. Prospects of online education of students have been offered during Covid-19. The main recommendations are the following: to organize training courses of online education methods for lecturers; to organize in-depth training courses of online education methods for lecturers of non-pedagogical specialties; the university's management should provide constant monitoring of the satisfaction of students and lecturers of the online education organization for the accumulation of statistical data in the dynamics.