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  The International Rice Genome Sequencing Project (IRGSP), a consortium of publicly funded laboratories, was established in 1997 to obtain a high quality, map-based sequence of the rice genome using the cultivar Nipponbare of Oryza sativa ssp. japonica. It is currently comprised of ten members: Japan, the United States of America, China, Taiwan, Korea, India, Thailand, France, Brazil, and the United Kingdom. The IRGSP adopts the clone-by-clone shotgun sequencing strategy so that each sequenced clone can be associated with a specific position on the genetic map and adheres to the policy of immediate release of the sequence data to the public domain. In December 2004, the IRGSP completed the sequencing of the rice genome. The high-quality and map-based sequence of the entire genome is now available in public databases.

Genome Sequencing

Publication list
Rice Functional Genomics, Challenges, Progress and Prospects.
	Springer, Upadhyaya, Narayana M. (Ed.) [Springer] [Amazon]

Decoding the rice genome
	Vij S, Gupta V, Kumar D, Vydianathan R, Raghuvanshi S, Khurana P, Khurana JP, Tyagi AK.
		BioEssays 28.4: 421-432

A fine physical map of the rice chromosome 5
	Cheng CH, Chung MC, Liu SM, Chen SK, Kao FY, Lin SJ, Hsiao SH, Tseng IC, Hsing YI,
	Wu HP, Chen CS, Shaw JF, Wu J, Matsumoto T, Sasaki T, Chen HH, Chow TY.
		Molecular Genetics and Genomics. 274: 337-345

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
	The Rice Chromosomes 11 and 12 Sequencing Consortia
		BMC Biology 2005, 3:20

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species
	The Rice Chromosome 3 Sequencing Consortium
		Genome Research 15:1284-1291, 2005

The map-based sequence of the rice genome
	International Rice Genome Sequencing Project.
		Nature 436: 793-800

In-Depth View of Structure, Activity, and Evolution of Rice Chromosome 10
	The Rice Chromosome 10 Sequencing Consortium
		Science 300:1566-1569

The genome sequence and structure of rice chromosome 1
	Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, 
	Antonio BA, Kanamori H, Hosokawa S, Masukawa M, Arikawa K, Chiden Y, Hayashi M, Okamoto M, Ando T, 
	Aoki H, Arita K, Hamada M, Harada C, Hijishita S, Honda M, Ichikawa Y, Idonuma A, Iijima M, Ikeda M, 
	Ikeno M, Ito S, Ito T, Ito Y, Ito Y, Iwabuchi A, Kamiya K, Karasawa W, Katagiri S, Kikuta A, 
	Kobayashi N, Kono I, Machita K, Maehara T, Mizuno H, Mizubayashi T, Mukai Y, Nagasaki H, Nakashima M, 
	Nakama Y, Nakamichi Y, Nakamura M, Namiki N, Negishi M, Ohta I, Ono N, Saji S, Sakai K, Shibata M, 
	Shimokawa T, Shomura A, Song J, Takazaki Y, Terasawa K, Tsuji K, Waki K, Yamagata H, Yamane H, 
	Yoshiki S, Yoshihara R, Yukawa K, Zhong H, Iwama H, Endo T, Ito H, Hahn JH, Kim HI, Eun MY, Yano M, 
	Jiang J, Gojobori T.
		Nature 420:312-316

Sequence and analysis of rice chromosome 4
	Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, 
	Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, 
	Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, 
	Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, 
	Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, 
	Gu M, Jiang J, Li J, Hong G, Xue Y, Han B.
		 Nature 420:316-320

Award list

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Contact

 Comments, questions and suggestions to the IRGSP.
  rgpwebmaster@ml.affrc.go.jp

last update 25 December 2008
rgpwebmaster@ml.affrc.go.jp
Copyright (C) The International Rice Genome Sequencing Project (IRGSP). 2013 All rights reserved.
RGP NIAS STAFF IRGSP