WO1999042133A1 - Inhibitors of complement activation - Google Patents

Abstract

The invention relates to factor D inhibitors, which bind to factor D and block the functional activity of factor D in complement activation. The inhibitors include antibody molecules, as well as homologues, analogues and modified or derived forms thereof, including immunoglobulin fragments like Fab, (Fab')2 and Fv, small molecules, including peptides, oligonucleotides, peptidomimetics and organic compounds. A monoclonal antibody which bound to factor D and blocked its ability to activate complement was generated and designated 166-32. The hybridoma producing this antibody was deposited at the American Type Culture Collection, 10801 University Blvd., Manassas, VA 20110-2209, under Accession Number HB-12476.

Description

Inhibitors of Complement Activation

FIELD OF THE INVENTION

This invention relates to inhibitors specific to factor D and the use of such

inhibitors in inhibiting complement system activation and inhibiting alternative

pathway complement activation.

BACKGROUND OF THE INVENTION

The complement system plays a central role in the clearance of immune

complexes and the immune response to infectious agents, foreign antigens, virus-

infected cells and tumor cells. However, complement is also involved in

pathological inflammation and in autoimmune diseases. Therefore, inhibition of

excessive or uncontrolled activation of the complement cascade could provide

clinical benefit to patients with such diseases and conditions.

The complement system encompasses two distinct activation pathways,

designated the classical and the alternative pathways (V.M. Holers, In Clinical

Immunology: Principles and Practice, ed. R.R. Rich, Mosby Press; 1996, 363-391).

The classical pathway is a calcium/magnesium-dependent cascade which is

normally activated by the formation of antigen-antibody complexes. The alternative

pathway is magnesium-dependent cascade which is activated by deposition and

activation of C3 on certain susceptible surfaces (e.g. cell wall polysaccharides of yeast and bacteria, and certain biopolymer materials). Activation of the complement pathway generates biologically active fragments of complement proteins, e.g. C3a,

C4a and C5a anaphylatoxins and C5b-9 membrane attack complexes (MAC), which mediate inflammatory activities involving leukocyte chemotaxis, activation of macrophages, neutrophils, platelets, mast cells and endothelial cells, vascular permeability, cytolysis, and tissue injury.

Factor D is a highly specific serine protease essential for activation of the alternative complement pathway. It cleaves factor B bound to C3b, generating the

C3b/Bb enzyme which is the active component of the alternative pathway C3/C5 convertases. Factor D may be a suitable target for inhibition, since its plasma concentration in humans is very low (1.8 μg/ml), and it has been shown to be the limiting enzyme for activation of the alternative complement pathway (P.H. Lesavre and H.J. Mϋller-Eberhard. J. Exp. Med., 1978; 148: 1498-1510; J.E. Volanakis et

al., New Eng. J. Med., 1985; 312: 395-401). The down-regulation of complement activation has been demonstrated to be effective in treating several disease indications in animal models and in ex vivo

studies, e.g. systemic lupus erythematosus and glomerulonephritis (Y. Wang et al.,

Proc. Natl. Acad. Sci.; 1996, 93: 8563-8568), rheumatoid arthritis (Y. Wang et al.,

Proc. Natl. Acad. Sci., 1995; 92: 8955-8959), cardiopulmonary bypass and hemodialysis (CS. Rinder, J. Clin. Invest, 1995; 96: 1564-1572), hypercute rejection in organ transplantation (TJ. Kroshus et al., Transplantation, 1995; 60:

j jnBEDSHεETCRU^βl 1194-1202), myocardial infarction (J. W. Homeister et al., J. Immunol., 1993; 150:

1055-1064; H.F. Weisman et al., Science, 1990; 249: 146-151), reperfusion injury

(E.A. Amsterdam et al., Am. J. Physiol., 1995; 268: H448-H457), and adult

respiratory distress syndrome (R. Rabinovici et al., J. Immunol., 1992; 149: 1744-

1750). In addition, other inflammatory conditions and autoimmune/immune complex

diseases are also closely associated with complement activation (V.M. Holers, ibid.,

B.P. Morgan. Eur. J. Clin. Invest, 1994: 24: 219-228), including thermal injury,

severe asthma, anaphylactic shock, bowel inflammation, urticaria, angioedema,

vasculitis, multiple sclerosis, myasthenia gravis, membranoproliferative

glomerulonephritis, and Sjδgren's syndrome.

SUMMARY OF THE INVENTION

The invention includes factor D inhibitors, which bind to factor D and block

the functional activity of factor D complement activation, including in alternative

pathway complement activation. The inhibitors include antibody molecules, as well

as homologues, analogues and modified or derived forms thereof, including

immunoglobulin fragments like Fab, (Fab')₂ and Fv. Small molecules including

peptides, oligonucleotides, peptidomimetics and organic compounds which bind to

factor D and block its functional activity are also included.

A monoclonal antibody which bound to factor D and blocked its ability to

activate complement was generated and designated 166-32. The hybridoma

producing this antibody was deposited at the American Type Culture Collection, 10801 University Blvd., Manassas, VA 20110-2209, under Accession Number HB-

12476.

DESCRIPTION OF THE DRAWINGS

Fig. 1 shows the binding of anti-factor D monoclonal antibodies (MAbs) to

purified human factor D in ELISA. The line marked with filled circles represents

MAb 166-11. The line marked with filled triangles represents MAb 166-32. The line

marked with filled diamonds represents MAb 166-188. The line marked with filled

squares represents MAb 166-222. The Y-axis represents the reactivity of the MAbs

with factor D expressed as optical density (OD) at 450 nm and the X-axis represents

the concentration of the MAbs.

Fig. 2 shows the inhibition of alternative pathway (AP) hemolysis of

unsensitized rabbit red blood cells (RBCs) by MAb 166-32 in the presence of 10%

human serum. The line marked with filled squares represents MAb 166-32. The

line marked with filled circles represents the irrelevant isotype-matched control MAb

G3-519, which is specific to HIV envelope glycoprotein gp120. The Y-axis

represents the % hemolysis inhibition, as further described in the text. The X-axis

represents the concentration of the MAbs.

Fig. 3 shows the inhibition of alternative pathway (AP) hemolysis of

unsensitized rabbit red blood cells (RBCs) by MAb 166-32 in the presence of 90%

human serum. The line marked with filled squares represents MAb 166-32. The

line marked with filled circles represents the irrelevant isotype-matched control MAb G3-519, which is specific to HIV envelope glycoprotein gp120. The Y-axis

represents the % hemolysis inhibition, as further described in the text. The X-axis

represents the concentration of the MAbs.

Fig. 4 shows that MAb 166-32 does not inhibit classical pathway (CP)

hemolysis of sensitized chicken RBCs, whereas the positive control anti-human C5

MAb 137-76 does. The line marked with filled circles represents MAb 137-76. The

line marked with filled diamonds and with filled squares represents MAb 166-32

and the negative control MAb G3-519, respectively. The Y-axis represents the %

hemolysis inhibition. The X-axis represents the concentration of the MAbs.

Fig. 5 shows the inhibition of alternative pathway (AP) hemolysis by MAb

166-32. Hemolysis was augmented by adding different concentrations of purified

human factor D to a human serum depleted of its factor D by affinity

chromatography using anti-factor D MAb 166-222. The assays were performed in

the presence or absence of 0.3 μg/ml test MAbs. The line marked with filled

squares represents no antibody added. The line marked with filled circles

represents MAb 166-32. The line marked with filled triangles represents the

irrelevant isotype-matched control MAb G3-519. The Y-axis represents the %

hemolysis inhibition. The X-axis represents the concentration of factor D.

Fig. 6 shows the inhibition of factor-dependent EAC3b cell lysis by MAb 166-

32. The alternative C3 convertase was assembled on EAC3b cells by incubation

with factor B, factor P and factor D. Different concentrations of MAb 166-32 were added to the incubation buffer to inhibit the activity of factor D. The line marked with

filled squares represents MAb 166-32. The line marked with filled circles represents

MAb G3-519. The Y-axis represents the % hemolysis inhibition. The X-axis

represents the concentration of the MAbs.

Fig. 7 shows the inhibition of C3a production from zymosan by MAb 166-32.

Zymosan activated the alternative complement pathway in the presence of human

serum. The production of C3a was measured by using an ELISA assay kit. The

line marked with filled squares represents MAb 166-32. The line marked with filled

circles represents the irrelevant isotype-control MAb G3-519. The Y-axis represents

the % inhibition of C3a production. The X-axis represents the concentration of the

MAbs.

Fig. 8 shows the inhibition of sC5b-9 production from zymosan by MAb 166-

32. Zymosan activated the alternative complement pathway in the presence of

human serum. The production of sC5b-9 was measured by using an ELISA assay

kit. The line marked with filled squares represents MAb 166-32. The line marked

with filled circles represents the irrelevant isotype-control MAb G3-519. The Y-axis

represents the % inhibition of sC5b-9 production. The X-axis represents the

concentration of the MAbs.

Fig. 9 shows the inhibition of alternative pathway hemolysis of unsensitized

rabbit RBCs by MAb 166-32 and its Fab. The line marked with filled circles

represents MAb 166-32 (whole IgG). The line marked with filled squares represents the Fab of the MAb 166-32. The Y-axis represents the % hemolysis inhibition. The

X-axis represents the concentration of the MAbs.

Fig. 10 shows the inhibitory effect of MAb 166-32 on factor D in sera from

different animal species in alternative pathway hemolysis of unsensitized rabbit

RBCs. The line marked with filled squares represents human serum. The line

marked with filled circles represents chimpanzee serum. The line marked with filled

triangles represents rhesus monkey serum. The line marked with filled, inverted

triangles represents baboon serum. The line marked with filled diamonds

represents cynomolgus monkey serum. The line marked with open circles

represents sheep serum. The line marked with open triangles represents canine

serum. The Y-axis represents the % hemolysis inhibition. The X-axis represents

the concentration of MAb 166-32.

Fig. 11 shows the reactivity of MAb 166-32 with different Baculovirus

expressed factor D ("FD") mutants and hybrids in ELISA. The line marked with filled

squares represents human factor D, FD/Hu. The line marked with filled circles

represents pig factor D, FD/Pig. The line marked with filled triangles represents

FD/Pighu. The line marked with filled, inverted triangles represents the hybrid

protein, FD/Hupig. The line marked with filled diamonds represents the mutant

protein, FDΛ/DA. The line marked with open circles represents the mutant protein,

FD/L. The line marked with open squares represents the mutant protein, FD/RH. The line marked with open diamonds represents the blank with no coating antigen.

The recombinant proteins are further described in the text.

Fig. 12 shows the schematic representation of the expression vector

plasmids for chimeric 166-32 Fab: (A) pSV2dhfrFd and (B) pSV2neo. Solid boxes

represent the exons encoding the Fd or μ gene. Hatched segments represent the

HCMV-derived enhancer and promoter elements (E-P), as indicated below. Open

boxes are the dihydrofolate reductase (dhfr) and neo genes, as marked. The pSV2

plasmid consists of DNA segments from various sources: pBR322 DNA (thin line)

contains the pBR322 origin of DNA replication (pBR ori) and the lactamase

ampicillin resistance gene (Amp); SV40 DNA, represented by wider hatching and

marked, contains the SV40 origin of DNA replication (SV40 oh), early promoter (5'

to the dhfr and neo genes), and polyadenyiation signal (3' to the dhfr and neo

genes). The SV40-derived polyadenyiation signal (pA) is also placed at the 3' end

of the Fd gene.

Fig. 13 shows the inhibition of alternative pathway (AP) hemolysis of

unsensitized rabbit RBCs. The line marked with filled squares represents the

murine MAb 166-32. The line marked with filled circles represents chimeric MAb

166-32. The line marked with filled triangles represents isotype-matched negative

control antibody G3-519. The Y-axis represents % inhibition of hemolysis. The X-

axis represents the antibody concentration. Fig. 14 shows the inhibition of alternative pathway (AP) hemolysis of

unsensitized rabbit RBCs. The line marked with filled squares represents chimeric

166-32 IgG. The line marked with filled circles represents cFab/9aa. The line

marked with filled triangles represents cFab. The Y-axis represents % inhibition of

hemolysis. The X-axis represents the protein concentration of the IgG and Fab.

Fig. 15 shows the effects of anti-factor D MAb 166-32 treatment on the

hemodynamic functions of isolated rabbit hearts perfused with human plasma. Left

ventricular end-diastolic pressure (LVEDP) is represented by filled circles (for MAb

166-32) and filled squares (for MAb G3-519). Left ventricular developed pressure

(LVDP) is represented by open circles (for MAb 166-32) and open squares (for MAb

G3-519). MAb G3-519 is the isotype-matched irrelevant control.

Fig. 16 is a typical representation of left ventricular developed pressure

(LVDP) by the two antibody groups in an isolated rabbit heart study. The upper

panel represents a heart treated with the negative control antibody, MAb G3-519,

and the lower panel a heart treated with MAb 166-32. The MAb G3-519 treated

heart was not able to maintain LVDP after challenge with 4% human plasma, while

the MAb 166-32 treated heart retained almost baseline LVDP after 60 minutes of

perfusion with 4% human plasma.

Fig. 17 shows the concentration of Bb in lymphatic effluents at selected

timepoints from isolated rabbit hearts perfused with 4% human plasma. Samples 10

from MAb 166-32 treated hearts (open circles) contained significantly less Bb than

MAb G3-519 treated hearts (filled squares), p< 0.05.

Fig. 18 shows the alternative pathway hemolytic activity of plasma samples

collected at different time points from the extracorporeal circuits treated with MAb

166-32 (filled squares) or MAb G3-519 (filled circles).

Fig. 19 shows the concentration of C3a in plasma samples collected at

different time points from the extracorporeal circuits treated with MAb 166-32 (filled

squares) or MAb G3-519 (filled circles).

Fig. 20 shows the concentration of sC5b-9 in plasma samples collected at

different time points from the extracorporeal circuits treated with MAb 166-32 (filled

squares) or MAb G3-519 (filled circles).

Fig. 21 shows the concentration of Bb in plasma samples collected at

different time points from the extracorporeal circuits treated with MAb 166-32 (filled

squares) or MAb G3-519 (filled circles).

Fig. 22 shows the concentration of C4d in plasma samples collected at

different time points from the extracorporeal circuits treated with MAb 166-32 (filled

squares) or MAb G3-519 (filled circles).

Fig. 23 shows the level of expression of CD11b on the surface of neutrophils

obtained at different time points from the extracorporeal circuits treated with MAb

166-32 (filled squares) or MAb G3-519 (filled circles). The level of expression of 11

CD11b is represented by mean fluorescence intensity (MFI) obtained by

immunocytofluorometic analyses.

Fig. 24 shows the level of expression of CD62P on the surface of platelets

obtained at different time points from the extracorporeal circuits treated with MAb

166-32 (filled squares) or MAb G3-519 (filled circles). The level of expression of

CD62P is represented by mean fluorescence intensity (MFI) obtained by

immunocytofiuorometric analyses.

Fig. 25 shows the concentration of neutrophil-specific myeloperoxidase

(MPO) in plasma samples collected at different time points from the extracorporeal

circuits treated with MAb 166-32 (filled squares) or MAb G3-519 (filled circles).

DESCRIPTION OF THE SEQUENCE LISTING

SEQ ID NO:1 shows the nucleotide sequence of human factor D.

SEQ ID NO:2 shows the amino acid sequence of human factor D.

SEQ ID NO:3 shows the nucleotide sequence of pig factor D.

SEQ ID NO:4 shows the amino acid sequence of pig factor D.

SEQ ID NO:5 is the primer used for cloning the V_κ gene of MAb 166-32.

SEQ ID NO:6 was used as an anealed adaptor for cloning the V_κ gene of

MAb 166-32, as described below, and as a primer.

SEQ ID NO:7 was also used as an anealed adaptor for cloning the V_κ gene

of MAb 166-32, as described below.

SEQ ID NO:8 was used as a 3' primer for cloning the V_H gene of MAb 166- 12

32, as described below.

SEQ ID NO:9 was a primer used for cloning the V_H gene of MAb 166-32.

SEQ ID NO: 10 was used as a primer for cloning the V_H gene of MAb 166-32.

SEQ ID NO: 11 was the 5' primer for the PCR of the Fd gene of MAb 166-32.

SEQ ID NO: 12 was the 3' primer for the PCR of the Fd gene of MAb 166-32.

SEQ ID NO: 13 was the 5' primer for the Fd gene PCR of MAb 166-32

SEQ ID NO: 14 was the 3' primer for the Fd gene PCR of MAb 166-32.

MAKING AND USING THE INVENTION

A. Generation of Monoclonal antibodies (MAbs) to human factor D

In one embodiment of the invention, anti-factor D MAbs can be raised by

immunizing rodents [e.g. mice, rats, hamsters and guinea pigs) with either native

factor D purified from human plasma or urine, or recombinant factor D or its

fragments expressed by either eukaryotic or prokaryotic systems. Other animals

can be used for immunization, e.g. non-human primates, transgenic mice

expressing human immunoglobulins and severe combined immunodeficient (SCID)

mice transplanted with human B lymphocytes. Hybridomas can be generated by

conventional procedures by fusing B lymphocytes from the immunized animals with

myeloma cells (e.g. Sp2/0 and NSO), as described by G. Kόhler and C. Milstein

(Nature, 1975: 256: 495-497). In addition, anti-factor D antibodies can be

generated by screening of recombinant single-chain Fv or Fab libraries from human

B lymphocytes in phage-display systems. The specificity of the MAbs to human 13

factor D can be tested by enzyme linked immunosorbent assay (ELISA), Western

immunoblotting, or other immunochemical techniques. The inhibitory activity of the

antibodies on complement activation can be assessed by hemolytic assays using

unsensitized rabbit or guinea pig red blood cells (RBCs) for the alternative pathway,

and using sensitized chicken or sheep RBCs for the classical pathway. The

hybridomas in the positive wells are cloned by limiting dilution. The antibodies are

purified for characterization for specificity to human factor D by the assays

described above.

If used in treating inflammatory or autoimmune diseases in humans, the anti-

factor D antibodies would preferably be used as chimeric, deimmunized, humanized

or human antibodies. Such antibodies can reduce immunogenicity and thus avoid

human anti-mouse antibody (HAMA) response. It is preferable that the antibody be

lgG4, lgG2, or other genetically mutated IgG or IgM which does not augment

antibody-dependent cellular cytotoxicity (S.M. Canfield and S.L. Morrison, J. Exp.

Med., 1991 : 173: 1483-1491) and complement mediated cytolysis (Y.Xu et al., J.

Biol. Chem., 1994: 269: 3468-3474; V.L. Pulito et al., J. Immunol., 1996; 156: 2840-

2850).

Chimeric antibodies are produced by recombinant processes well known in

the art, and have an animal variable region and a human constant region.

Humanized antibodies have a greater degree of human peptide sequences than do

chimeric antibodies. In a humanized antibody, only the complementarity 14

determining regions (CDRs) which are responsible for antigen binding and

specificity are animal derived and have an amino acid sequence corresponding to

the animal antibody, and substantially all of the remaining portions of the molecule

(except, in some cases, small portions of the framework regions within the variable

region) are human derived and correspond in amino acid sequence to a human

antibody. See L. Riechmann et al., Nature, 1988; 332: 323-327; G. Winter, United

States Patent o. 5,225,539; C. Queen et al., U.S. patent number 5,530,101.

Deimmunized antibodies are antibodies in which the T and B cell epitopes

have been eliminated, as described in International Patent Application

PCT/GB98/01473. They have no or reduced immunogenicity when applied in vivo.

Human antibodies can be made by several different ways, including by use

of human immunoglobulin expression libraries (Stratagene Corp., La Jolla,

California) to produce fragments of human antibodies (VH, VL, Fv, Fd, Fab, or

(Fab')₂, and using these fragments to construct whole human antibodies using

techniques similar to those for producing chimeric antibodies. Human antibodies

can also be produced in transgenic mice with a human immunoglobulin genome.

Such mice are available from Abgenix, Inc., Fremont, California, and Medarex, Inc.,

Annandale, New Jersey.

One can also create single peptide chain binding molecules in which the

heavy and light chain Fv regions are connected. Single chain antibodies ("ScFv")

and the method of their construction are described in U.S. Patent No. 4,946,778. 15

Alternatively, Fab can be constructed and expressed by similar means (M.J. Evans et al., J. Immunol. Meth., 1995; 184: 123-138). All of the wholly and partially human antibodies are less immunogenic than wholly murine MAbs, and the fragments and single chain antibodies are also less immunogenic. All these types of antibodies are therefore less likely to evoke an immune or allergic response. Consequently, they are better suited for in vivo administration in humans than wholly animal antibodies, especially when repeated or long-term administration is necessary. In addition, the smaller size of the antibody fragment may help improve tissue bioavailability, which may be critical for better dose accumulation in acute

disease indications.

Based on the molecular structures of the variable regions of the anti-factor D antibodies, one could use molecular modeling and rational molecular design to generate and screen small molecules which mimic the molecular structures of the

binding region of the antibodies and inhibit the activities of factor D. These small

molecules can be peptides, peptidomimetics, oligonucleotides, or organic compounds. The mimicking molecules can be used as inhibitors of complement activation in inflammatory indications and autoimmune diseases. Alternatively, one could use large-scale screening procedures commonly used in the field to isolate suitable small molecules form libraries of combinatorial compounds. In one preferred embodiment of the invention, a chimeric Fab, having animal

(mouse) variable regions and human constant regions is used therapeutically. The 16

Fab is preferred because:

1. it is smaller than a whole immunoglobulin and may provide better tissue

permeation;

2. as monovalent molecule, there is less chance of immunocomplexes and

aggregates forming; and

3. it can be produced in a microbial system, which can more easily be scaled-up

than a mammalian system.

B. Applications of the Anti-Factor D Molecules

The anti-factor D binding molecules, antibodies, and fragments of this

invention, can be administered to patients in an appropriate pharmaceutical

formulation by a variety of routes, including, but not limited, intravenous infusion,

intravenous bolus injection, and intraperitoneal, intradermal, intramuscular,

subcutaneous, intranasal, intratracheal, intraspinal, intracranial, and oral routes.

Such administration enables them to bind to endogenous factor D and thus inhibit

the generation of C3b, C3a and C5a anaphylatoxins, and C5b-9.

The estimated preferred dosage of such antibodies and molecules is

between 10 and 500 μg/ml of serum. The actual dosage can be determined in

clinical trials following the conventional methodology for determining optimal

dosages, i.e., administering various dosages and determining which is most

effective.

The anti-factor D molecules can function to inhibit in vivo complement 17

activation and/or the alternative complement pathway and inflammatory

manifestations that accompany it, such as recruitment and activation of

macrophages, neutrophils, platelets, and mast cells, edema, and tissue damage.

These inhibitors can be used for treatment of diseases or conditions that are

mediated by excessive or uncontrolled activation of the complement system. These

include, but are not limited to: (1) tissue damage due to ischemia-reperfusion

following acute myocardial infarction, aneurysm, stroke, hemorrhagic shock, crush

injury, multiple organ failure, hypovolemic shock and intestinal ischemia; (2)

inflammatory disorders, e.g., burns, endotoxemia and septic shock, adult respiratory

distress syndrome, cardiopulmonary bypass, hemodialysis; anaphylactic shock,

severe asthma, angioedema, Crohn's disease, sickle cell anemia, poststreptococcal

glomerulonephritis and pancreatitis; (3) transplant rejection, e.g., hyperacute

xenograft rejection; and (4) adverse drug reactions, e.g., drug allergy, IL-2 induced

vascular leakage syndrome and radiographic contrast media allergy. Autoimmune

disorders including, but not limited to, systemic lupus erythematosus, myasthenia

gravis, rheumatoid arthritis, Alzheimer's disease and multiple sclerosis, may also be

treated with the inhibitors of the invention.

The anti-factor D molecules can also be used diagnostically to ascertain the

presence of, or to quantify, factor D in a tissue specimen or a body fluid sample,

such as serum, plasma, urine or spinal fluid. In this application, well known assay

formats can be used, such as immunohistochemistry or ELISA, respectively. Such 18

diagnostic tests could be useful in determining whether certain individuals are either

deficient in or overproduce factor D.

C. Animal Models of the Therapeutic Efficacy of Factor D Inhibitors

The therapeutic activity of factor D inhibitors in various disease indications

described above can be confirmed by using available animal models for various

inflammatory and autoimmune manifestations. The in vitro tests described below

in the examples are adequate to establish their efficacy.

Animal models relevant to various complement-related clinical diseases in

humans can also be used to confirm the in vivo efficacy of factor D inhibitors.

These include, but not limited to: myocardial ischemia/reperfusion injury (H.F.

Weisman et al., Science, 1990; 249: 146-151); myocardial infarction (J.W.

Homeister et al., J. Immunol. 1993; 150: 1055-1064), systemic lupus erythematosus

and glomerulonephritis (S.K. Datta. Meth. Enzymol., 1988; 162: 385-442; D.J.

Salvant and AN. Cybulsky, Meth. Enzymol., 1988; 162: 421-461), rheumatoid

arthritis (Y. Wang et al., Proc. Natl. Acad. Sci., 1995; 92: 8955-8959), adult

respiratory distress syndrome (R. Rabinovici et al., J. Immunol., 1992; 149: 1744-

1750), hyperacute rejection in organ transplantation (T.J. Kroshus et al.,

Transplantation, 1995; 60: 1194-1202), burn injury (M.S. Mulligan et al., J.

Immunol., 1992; 148: 1479-1485), cardiopulmonary bypass (CS. Rinder et al., J.

Clin. Invest, 1995; 96: 1564-1572).

Exemplification of how to make and use the invention, and verification of its 19

utility, appear below.

Example 1 : Generation of anti-factor D MAbs

Male A/J mice (Harlan, Houston, TX), 8-12 weeks old, were injected

subcutaneously with 25 g of factor D purified from human serum (Advanced

Research Technologies, San Diego, CA) in complete Freund's adjuvant (Difco

Laboratories, Detroit, Michigan) in 200 μl of phosphate-buffered saline (PBS) pH7.4.

The factor D preparation were tested to be > 95% pure by sodium dodecylsulphate

(SDS)-polyacrylamide gel electrophoresis (PAGE). The factor D was tested and

found to be biologically active in hemolysis as described below. At two-week

intervals the mice were twice injected subcutaneously with 25 μg of human factor

D in incomplete Freund's adjuvant. Then two weeks later and three days prior to

sacrifice, the mice were again injected intraperitoneally with 25 μg of the same

antigen in PBS. For each fusion, single cell suspensions were prepared from the

spleen of an immunized mouse and used for fusion with Sp2/0 myeloma cells. 5 x

10⁸ of the Sp2/0 and 5 x 10⁸ spleen cells were fused in a medium containing 50%

polyethylene glycol (M.W. 1450) (Kodak, Rochester, NY) and 5% dimethylsulfoxide

(Sigma Chemical Co., St. Louis, MO). The cells were then adjusted to a

concentration of 1.5 x 10⁵ spleen cells per 200 μl of the suspension in Iscove

medium (Gibco, Grand Island, NY), supplemented with 10% fetal bovine serum, 100

units/ml of penicillin, 100 μg/ml of streptomycin, 0.1 mM hypoxanthine, 0.4 M

aminopterin, and 16 M thymidine. Two hundred microliters of the cell suspension 20

were added to each well of about twenty 96-well microculture plates. After about ten

days culture supernatants were withdrawn for screening for reactivity with purified

factor D in ELISA.

Wells of Immulon 2 (Dynatech Laboratories, Chantilly, VA) microtest plates

were coated by adding 50 μl of purified human factor at 50 ng/ml overnight at room

temperature. The low concentration of factor D for coating enabled the selection of

high-affinity antibodies. After the coating solution was removed by flicking of the

plate, 200 μl of BLOTTO (non-fat dry milk) in PBS was added to each well for one

hour to block the non-specific sites. An hour later, the wells were then washed with

a buffer PBST (PBS containing 0.05% Tween 20). Fifty microliters of culture

supernatants from each fusion well were collected and mixed with 50 μl of BLOTTO

and then added to the individual wells of the microtest plates. After one hour of

incubation, the wells were washed with PBST. The bound murine antibodies were

then detected by reaction with horseradish peroxidase (HRP) conjugated goat anti-

mouse IgG (Fc specific) (Jackson ImmunoResearch Laboratories, West Grove, PA)

and diluted at 1:2,000 in BLOTTO. Peroxidase substrate solution containing 0.1%

3,3,5,5 tetramethyl benzidine (Sigma, St. Louis, MO) and 0.0003% hydrogen

peroxide (sigma) was added to the wells for color development for 30 minutes. The

reaction was terminated by addition of 50 μl of 2M H₂S0₄ per well. The OD at 450

nM of the reaction mixture was read with a BioTek ELISA Reader (BioTek

Instruments, Winooski, VM). 21

The culture supernatants from the positive wells were then tested by two

assays: i) inhibition of alternative pathway hemolysis of unsensitized rabbit RBCs

by pre-titered human serum by the method described below; and ii) inhibition of

formation of C3a by zymosan treated with human serum as described below. The

cells in those positive wells were cloned by limiting dilution. The MAbs were tested

again for reactivity with factor D in the ELISA. The selected hybridomas were grown

in spinner flasks and the spent culture supernatant collected for antibody purification

by protein A affinity chromatography. Four MAbs were tested to be strongly reactive

with human factor D in ELISA. These MAbs are designated 166-11 , 166-32, 166-

188, and 166-222 (Fig. 1). Among them, MAb 166-32 (lgG1) strongly inhibited the

alternative pathway hemolysis of unsensitized rabbit RBCs as described below.

Example 2: Determination the kinetic constants of the anti-factor D MAbs by surface plasmon resonance method

The kinetic constants for the binding of MAbs 166-11 , 166-32, 166-188, and

166-22 to human factor D were determined by surface plasmon resonance-based

measurements using the BIAcore instrument (Pharmacia Biosensor AB, Uppsala,

Sweden). All the binding measurements were performed in HEPES-buffered saline

(HBS) (10 mM HEPES, pH 7.4, 150 mM NaCI, 3.4 mM EDTA, 0.005% Surfactant

P20) at 25°C. To measure the binding rate constants of factor D to the MAbs, a

rabbit anti-mouse IgG (H+L) was immobilized onto a CM5 sensorchip by amine

coupling using N-hydroxysuccinimide and N-ethyl-N'-(3-diethylaminopropyl) 22

carbodimide. Each individual MAb was then captured onto the coated sensorchip

before the injection of factor D at different concentrations. To measure the

association rate constants (/ _assoc), five dilutions of factor D (2.5 nM, 5 nM, 10 nM, 15

nM and 20 nM) were made based on the concentration indicated by the

manufacturer, and were injected to the flowcell at the flow rate of 5 μl/min. To

measure the dissociation rate constants (/ _di8S0C), 100 nM factor D was injected into

the flowcell at the flow rate of 5 μl/min. The data, in the form of sensorgrams, was

analyzed using the data-fitting programs implemented in the BIAcore system. Since

MAb 166-32 has a very fast k_assoc which is beyond the reliability limit of the assay

format due to the limitation of the mass transport effect, an additional binding format

was also used to measure its kinetic rate constants. Factor D was immobilized onto

the sensorchip by amine coupling as described above while MAb 166-32 of different

dilutions (5 nM, 10 nM, 15 nM, 20 nM and 25 nM for the measurement of k_assoc and

200 nM for the measurement of / _dissoc flowed to the sensorchip at the flow rate of 5

μl/min. The data, in the form of sensorgrams, was analyzed as described above.

The kinetic constants of factor D binding to the MAbs on BIAcore is shown in Table

1 below. MAbs 166-32 and 166-222 have very high affinity to factor D, with

equilibrium dissociation constant (K_D) less than 0J nM. 23

Table 1 Kinetic Constants of Factor D Binding to MAbs on BIAcore

MAbs / _assoc (x 10⁵ M-V) ^dissoc (^x 10 S ) K_D (x 10-¹⁰M)^c

166-32³ >10 1.1 <1

166-32^b 4.6 0.76 1.6

166-188³ 8.75 2.1 2.4

166-11^a 8.0 1.0 1.24

166-222³ >10 0.8 <1

^a Factor D was used as the analyte which flowed onto the sensorchip coated with

anti-factor D MAb captured by rabbit anti-mouse IgG during the determination.

^b MAb 166-32 was used as the analyte and factor D was crosslinked to the

sensorchip by the amine-coupling method. 24

^c K_D, equilibrium dissociation constant, = k_άiss0 k_as&0C

Example 3: Inhibition of complement-activated hemolysis

To study the functional activity of the anti-factor D MAbs in inhibiting

complement activation in vitro, two hemolytic assays were used.

For the alternative pathway, unsensitized rabbit RBCs were washed three

times with gelatin/veronal-buffered saline (GVB/Mg-EGTA) containing 2 mM MgCI₂

and 1.6 mM EGTA. EGTA at a concentration of 10mM was used to inhibit the

classical pathway (K. Whaley et al., in A.W. Dodds (Ed.), Complement: A Practical

Approach. Oxford University Press, Oxford, 1997, pp. 19-47). The washed cells

were re-suspended in the same buffer at 1.7 x 10⁸ cells/ml. In each well of a round¬

bottom 96-well microtest plate, 50 μl of normal human serum (20%) was mixed with

50 μl of GVB/Mg-EGTA or serially diluted test MAb then 30 μl of the washed rabbit

RBCs suspension were added to the wells containing the mixtures. Fifty microliters

of normal human serum (20%) was .mixed with 80 μl of GVB/Mg-EGTA to give the

serum color background. For negative control, an isotype-matched anti-HIV-1

gp120 MAb, G3-519, was used. The final mixture was incubated at 37°C for 30

minutes. The plate was then shaken on a micro-test plate shaker for 15 seconds.

The plate was then centrifuged at 300 x g for 3 minutes. Supernatants (80 μl) were

collected and transferred to wells on a flat-bottom 96-well microtest plates for

measurement of OD at 405 nm. The percent inhibition of hemolysis is defined as

100 x [(OD without MAb - OD serum color background) - (OD with MAb - OD 25

serum color background)] / (OD without MAb - OD serum color background).

Fig. 2 shows the data that MAb 166-32 strongly inhibits in a dose-dependent

manner the alternative pathway hemolysis of unsensitized rabbit RBCs in the

presence of 10% human serum, whereas the irrelevant isotype-matched control

MAb G3-519 does not. MAb G3-519 is specific to HIV envelope glycoprotein

gp120.

In assays to test the inhibitory activity of MAb166-32 in 90% human serum,

frozen human serum was thawed and pre-treated with EGTA at a final concentration

of 10 mM. Ten microliters of serially diluted MAb 166-32 or G3-519 were added to

90 μl of EGTA-treated human serum in duplicate wells of a 96-well microtest plate

for 15 minutes at room temperature. Thirty microliters of the washed rabbit RBCs

were added to each well. The plate was incubated at 37°C for 30 minutes. The

plate was shaken on a plate-shaker for 15 seconds and then centrifuged at 300 x

g for 3 minutes. Supernatants (80 μl) were collected and transferred to wells on a

flat-bottom 96-well microtest plate for measurement of OD at 405 nm. Each plate

contained two wells containing 100 μl of 90% human serum and 30 μl of the buffer

as serum color background and also two wells containing the RBCs lysed with 100

μl of 90% human serum, in the absence of monoclonal antibody, to represent total

lysis. Fig.3 shows the data that MAb 166-32 strongly inhibits in a dose-dependent

manner the alternative pathway hemolysis of unsensitized rabbit RBCs even in the

presence of 90% human serum. 26

For the classical pathway, chicken RBCs (5 x 10⁷ cells/ml) in gelatin/veronal-

buffered saline (GVB⁺⁺) containing 0.5 mM MgCI₂ and 0.15 mM CaCI₂ were

sensitized with purified rabbit anti-chicken RBC immunoglobulins at 8 μg/ml (Inter-

Cell Technologies, Hopewell, NJ) for 15 minutes at 4°C The cells were then washed

with GVB⁺⁺. The final human serum concentration used was 2%.

Fig. 4 shows the data that MAb 166-32 and the irrelevant control G3-519 do

not inhibit the classical pathway hemolysis of sensitized chicken RBCs, whereas the

positive control anti-human C5 MAb 137-76 does. The data from Figs. 2, 3 and 4

indicate that MAb 166-32 is specific to the inhibition of the alternative pathway of

complement activation.

Example 4: Specificity of MAb 166-32 to factor D

Two hemolytic assays, as described below, were used to demonstrate the

specificity of MAb166-32 to human factor D.

(1) Inhibition of factor D dependent hemolytic assays using unsensitized rabbit RBCs

A human serum sample was first depleted of factor D by passing it through

an affinity column packed with 3M Emphaze Biosupport Medium (Pierce, Rockford,

IL) coupled with the anti-factor D MAb 166-222. The flow-through serum was tested

to be inactive in triggering alternative pathway hemolysis due to the complete

depletion of factor D. The procedure of this assay is similar to that described in

Example 3 described above, except purified factor D of varying concentrations was

added to the factor D depleted serum to reconstitute the hemolytic activity. Under 27

these conditions, the hemolysis of rabbit RBCs was factor D dependent. It was shown that the reconstituted hemolytic activity is linearly proportional to the concentration of the supplemented factor D (from 0.01 μg/ml to 2 μg/ml (Fig. 5)). The data from Fig. 5 also shows that 0.3 μg/ml of MAb 166-32 can completely inhibit hemolysis of unsensitized rabbit RBCs in the presence of 0.1 μg/ml supplemented factor D, whereas the negative control MAb G3-519 has no effect on the factor D dependent hemolysis. These data suggest that MAb 166-32 can effectively inhibit the biological activity of human factor D at a molar ratio of 1 :2 (MAb 166-32 to factor D). Therefore MAb 166-32 is a potent, high-affinity antibody to factor D. The antibody has the potential to be used clinically to treat diseases or indications caused by activation of the alternative complement pathway.

(2) Inhibition of the formation of alternative C3 convertase on EAC3b cells EAC3b cells are sheep RBCs coated with human C3b (purchased from the

National Jewish Center of Immunology and Respiratory Medicine, Denver, CO). In this assay, the alternative C3 convertase was assembled on the surface of EAC3b cells by addition of factor B, factor P (properdin) and factor D. EAC3b cells (5 x 10⁸), which were then washed three times in DGVB⁺⁺ medium (50% veronal buffered saline, pH7.2, containing 0.075 mM CaCI₂, 0.25 mM MgCI₂, 0.1% gelatin, 2.5% (w/v) dextrose, and 0.01 % sodium azide). The washed cells were then resuspended in 1.5 ml of DGVB⁺⁺, factor P (30 μg) and factor B (20 μg). The concentrations of

factor P and factor B were pre-determined to be in excess. Fifty microliters of the cell 28

suspension was added to each well of a round-bottom 96-well microtest plate. Then

50 μl of a mixture of factor D (1.2 ng/ml) and serially diluted MAb 166-32 or MAb

G3-519 was added to the wells containing to the cells for incubation for 15 minutes

at 30°C The concentration of factor D (1.2 ng/ml) was pre-determined to give over

90% hemolysis under these conditions. After incubation, the cells were washed

twice in GVB-EDTA medium (gelatin/veronal-buffered saline containing 10 mM

EDTA). The cells were then resuspended in 30 μl of GVB-EDTA medium. To initiate

hemolysis, 100 μl of guinea pig serum (Sigma) (diluted 1 :10 in GVB-EDTA) were

added to each well. The mixtures were then incubated at 37°C for 30 minutes. The

microtest plate was then centrifuged at 300 x g for 3 minutes. The supernatant was

collected for OD measurement at 405 nm.

Fig. 6 shows the results of the experiments that MAb 166-32 inhibits the lysis

of EAC3b cells, whereas the irrelevant MAb G3-519 does not. MAb 166-32 inhibits

factor D from cleavage of factor B, therefore preventing the formation of C3

convertase on the surface of EAC3b cells.

Example 5: Inhibition of the generation of C3a from complement-activated zymogen by MAb 166-32

To further ascertain the functional specificity of MAb 166-32 to factor D, the

effect of the MAb on alternative complement activation on zymosan (activated yeast

particles) was examined. Zymosan A (from Saccharomyces cerevisiae, Sigma) (1

mg/ml) was washed three times in GVB/Mg-EGTA and then resuspended in the

same medium at 1 mg/ml. Twenty-five microliters of MAb 166-32 or G3-519 in 29

different concentrations were mixed with 25 μl of human serum (diluted 1 :5 in

GVB/Mg-EGTA) in a microtube and incubated for 15 minutes at room temperature.

The blank contained no antibody but the plain medium and the serum. After

incubation, 50 μl of washed zymosan suspension were added to each tube for

incubation for 30 minutes at 37°C The microtubes were then centrifuged at 2000

x g for 5 minutes, the supernatants were collected and mixed with equal volume of

Specimen Stabilizing Solution (Quidel, San Diego, CA). The samples were frozen

at -25°C until being assayed. The concentration of C3a and sC5b-9 in the samples

were measured by quantitative ELISA kits (Quidel) according to the procedures

provided by the manufacturer.

Fig. 7 shows that MAb 166-32 inhibits the generation of C3a from

complement-activated zymosan, whereas the irrelevant MAb G3-519 has no effect.

These data suggest that MAb 166-32 inhibits the formation of C3 convertase by

factor D. The complete inhibition of factor D by MAb 166-32 can effectively block the

formation of C3 convertase as indicated by the inability to generate C3a. This will

lead to the inhibition of C5 convertase in the subsequent steps of the complement

cascade, as evidenced by the inhibition of sC5b-9 (MAC) formation (Fig. 8).

Example 6: Inhibition of complement-activated hemolysis by the Fab of MAb 166-32 In order to examine whether monovalent form of MAb 166-32 is effective in

inhibiting the alternative complement pathway as the parental bivalent MAb 166-32,

the Fab of MAb 166-32 was prepared by papain digestion using a commercial 30

reagent kit (Pierce). The Fab was then tested for inhibitory activity on the alternative

pathway hemolysis using unsensitized rabbit RBCs as described above.

Fig. 9 shows the data of the experiments that both the whole IgG and Fab

show similar potency in blocking the alternative complement activation. These

results suggest that monovalent form of MAb 166-32 is active and it retains the

similar potency against factor D as its parental bivalent antibody. This property is

important for the consideration of using Fab or single-chain Fv as the alternative

products. One advantage of using the latter monovalent forms is that they will have

better tissue penetration because of their smaller size. Inasmuch as the Fab of MAb

166-32 is active, it is likely that the binding epitope on factor D recognized by the

MAb is functionally important.

Example 7: Effects of MAb 166-32 on alternative pathway hemolysis using sera from different animal species

In order to study the cross-reactivity of MAb 166-32 with factor D from

different animal species, alternative pathway hemolytic assays were performed

using sera from different animal species. Fresh sera from different animal species

(human, rhesus monkey, chimpanzee, baboon, cynomolgus monkey, sheep, dog,

mouse, hamster, rat, rabbit, guinea pig and pig) were first tested for the CH50

values, which are defined as the dilution of the serum to achieve 50% lysis of

unsensitized rabbit RBCs. The inhibitory activity of MAb 166-32 on the same

hemolytic activity (CH50) of each serum was then tested and compared.

Fig. 10 shows that MAb 166-32 has strong inhibitory activity against sera 31

from human, rhesus monkey, and chimpanzee and moderate inhibitory activity

against sera from baboon, cynomolgus monkey, sheep and dog. The antibody does

not inhibit sera from mouse, hamster, rat, rabbit, guinea pig and pig. These data

suggests that MAb 166-32 binds to an epitope on factor D shared by humans,

rhesus monkeys, chimpanzees, baboons, cynomolgus monkeys, sheep and dogs.

Example 8: Construction of human Factor D mutants for epitope mapping of MAb 166-32

To delineate the binding epitope on human factor D recognized by MAb 166-

32, the reactivity of the antibody with human factor D on Western blots was first

tested. MAb 166-32 did not react with SDS-denatured human factor D (either

reduced or non-reduced) immobilized on nitrocellulose membrane. This result

indicates the MAb 166-32 binds native but not denatured factor D.

Since MAb 166-32 does not inhibit the hemolytic activity of mouse and pig

factor D as described in Example 7, it is likely that MAb 166-32 binds to a site on

human factor D that has a high degree of difference in the amino acid sequence

from those of mouse and pig factor D. Based on this concept, various factor D

mutants and hybrids were made by replacing amino acid residues in human factor

D with the corresponding amino acid residues in the pig counterpart, for mapping

the binding epitope of Mab 166-32, as described below.

(1) Construction of factor D mutants and hybrids

Human factor D gene segments were obtained by polymerase chain reaction

(PCR) using human adipocyte cDNA (Clontech, San Francisco, CA) as the template 32

and appropriate oligonucleotide primers. Amplified DNA fragments were digested

with βamHI and EcoRI restriction enzymes and the digested product was inserted

at the SamHI and EcoRI sites of the Baculovirus transfer vector pVL1393

(Pharmingen, San Diego, CA) to give the wild type pVL1393-factor D/Hu. The

human factor D is designated as factor D/Hu. The nucleotide sequence and the

deduced amino acid sequence of the mature human factor D protein are shown in

SEQ ID NOS: land 2 (R.T. White et al., J. Biol. Chem., 1992; 267:9210-9213;

GenBank accession number: M84526).

Pig factor D cDNA clone pMon24909 was obtained as a gift from J.L. Miner

of University of Nebraska (GenBank accession number: U29948). The SamHI-

EcoRI fragments of pMon24909 were cloned into pVL1393 to give pVL1393-factor

D/Pig. The pig factor D is designated as factor D/Pig. The nucleotide sequence and

the deduced amino acid sequence of the mature pig factor D protein are shown in

SEQ ID NOS: 3 and 4.

Three human factor D mutants were constructed by using appropriate

primers and overlapping PCR. The amino acid mutations were designed by

replacing the amino acid residues in the human sequence with the corresponding

amino acid residues of the pig sequence when the amino acid sequences of human

and pig factor D are aligned for homology comparison. The first mutant, factor

D/VDA, contained three amino acid mutations: V113E, D116E, and A118P. (This

is a short-hand method of designating mutations in which, for example, V113E 33

means that the valine at amino acid residue number 113 in human factor D was

changed to glutamic acid in pig factor D). The second mutant, factor D/RH,

contained two amino acid mutations: R156L and H159Y. The third mutant, factor

D/L, contained a single mutation: L168M. DNA sequences encoding these mutants

were confirmed by DNA sequencing. After digesting with appropriate enzymes, DNA

fragments were inserted at the βatπHI and EcoRI sites of the Baculovirus transfer

vector pVL1393 to give pVL1393-factorD/VDA, pVL1393-factorD/RH and pVL1393-

factorD/L, respectively.

Two chimeric human-pig factor D hybrids were also constructed by using

appropriate primers and overlapping PCR. The first hybrid, factor D/Hupig,

contained 52 human factor D-derived amino acids at the N-terminus, and the

remaining amino acids were derived from the pig factor D. The other hybrid, factor

D/Pighu, contained 52 pig factor D-derived amino acids at the N-terminus and the

remaining amino acids were derived from the human factor D. The SamHI and

EcoRI-digested DNA fragments were inserted at the SamHI and EcoRI sites of the

Baculovirus transfer vector pVL1393 to give pVL1393-factorD/Hupig and pVL1393-

factorD/Pighu.

(2) Expression of factor D mutants and hybrids

The procedures for transfection of the plasmids, generation of recombinant

Baculoviruses, and production of the recombinant factor D proteins in insect cells

Sf9 were done according to the manufacturer's manual (Baculovirus Expression 34

Vector System, Pharmingen).

(3) Purification of factor D mutants and hybrids

Factor D mutant and hybrid proteins from the culture supernatants of infected

Sf9 cells were purified by affinity chromatography using purified sheep anti-human

factor D polyclonal antibodies (The Binding Site Limited, San Diego, CA). Three

milliliters of sheep anti-human factor D antibodies (13.2 mg/ml) were equilibrated

in a coupling buffer (0.1 M borate and 0.75 M Na₂S0₄, pH 9.0) and coupled with 4

ml of Ultralink Biosupport Medium (Pierce) for 2 hours at room temperature. The

beads were washed first with 50 mM diethylamine, pH 11.5 to saturate all the

remaining reactive sites and then with a buffer containing 10 mM Tris, 0.15 M NaCI,

5 mM EDTA, 1% Triton X-100, and 0.02% NaN₃, pH 8.0. The gel was stored in the

buffer at 4°C.

Culture supernatant harvested from 100 ml spinner culture of Sf9 cells infected

with the various Baculovirus mutants were passed through the sheep anti-factor D

affinity column which was pre-equilibrated with PBS to remove the storage buffer.

The bound factor D proteins were eluted with 50 mM diethylamine, pH 11.5. The

collected fractions were immediately neutralized to pH 7.0 with 1 M Hepes buffer.

Residual salts were removed by buffer exchange with PBS by Millipore membrane

ultrafiltration (M.W. cut-off: 3,000) (Millipore Corp., Bedford, MA). Protein

concentrations were determined by the BCA method (Pierce).

(4) Factor D ELISA 35

The reactivity of MAb 166-32 with the various factor D mutants and hybrids was tested by ELISA. Different wells of 96-well microtest plates were coated with the proteins (factor D/Hu, factor D/Pig, factor D/Hupig, factor D/Pighu, factor D/VDH, factor D/RH, and factor D/L) by addition of 100 μl of each protein at 0.5 μg/ml in PBS. After overnight incubation at room temperature, the wells were treated with PBSTB (PBST containing 2% BSA) to saturate the remaining binding sites. The wells were then washed with PBST. One hundred microliters of serially diluted Mab 166-32 (1 μg/ml to 0.5 ng/ml) were added to the wells for 1 hour at room temperature. The wells were then washed with PBST. The bound antibody was detected by incubation with diluted HRP-goat anti-mouse IgG (Fc) (Jackson

ImmunoResearch) for 1 hour at room temperature. Peroxidase substrate solution was then added for color development as described above. The OD was measured

using an ELISA reader at 450 nm.

Fig. 11 shows that MAb 166-32 reacts with factor D/Hu, factor D/Pighu, and factor D/VDA, but not factor D/Pig, factor D/Hupig, factor D/RH, and factor D/L. The ELISA results indicate that amino acid residues Arg156, His159 and Leu168 of human factor D are essential for the binding of MAb 166-32. This is consistent with the fact that MAb 166-32 did not bind factor D/Hupig when the C-terminus portion of human factor D was replaced with that of pig. Amino acid residues Arg156, His159 and Leu168 are located in a so-called "methionine loop" constituted by a

disulfide linkage between Cys154 and Cys170 with a methionine residue at position 36

169 (J.E. Volanakis et al., In: The Human Complement System in Health and

Disease, J.E. Volanakis and M.M. Franks, eds., Marcel Dekker, 1998, pp. 49-81).

Structurally, the "methionine loop" is a member of a rigid type 1 β turn. It is found

to be exposed on the surface of the factor D molecule based on the data from X-ray

crystallography studies (S.V.L. Narayana et al., J. Mol. Biol., 1994, 235: 695-708).

However, the contribution of the "methionine loop" to substrate specificity and

catalysis of factor D has never been studied (J.E. Volanakis et al., Protein Sci.,

1996; 5: 553-564). The data here have demonstrated for the first time that the

"methionine loop" plays an important role in the functional activity of factor D. MAb

166-32 and its Fab, when bound to this region on factor D, can effectively inhibit the

catalysis of factor B.

Example 9: Cloning of anti-factor D MAb 166-32 variable region genes and construction and expression of chimeric 166-32 IgG and its Fab

In order to reduce the immunogenicity of MAb 166-32 when used in humans, a

chimeric form of MAb 166-32 was made by replacing the mouse constant regions

with human constant regions of lgG1. Two forms of chimeric Fab of the antibody

were also made by replacing the mouse constant regions with their human

counterparts. The cloning of MAb 166-32 variable region genes and the

construction and expression of the chimeric 166-32 antibody and its Fab are

described below.

(1) Cloning of anti-factor D MAb variable region genes

Total RNA was isolated from the hybridoma cells secreting anti-Factor D MAb 37

166-32 using RNAzol following the manufacturer's protocol (Biotech, Houston, TX). First strand cDNA was synthesized from the total RNA using oligo dT as the primer. PCR was performed using the immunoglobulin constant (C) region-derived 3' primers and degenerate primer sets derived from the leader peptide or the first framework region of murine V_H or V« genes as the 5' primers. Although amplified DNA was noted for VH_, no DNA fragment of expected lengths was amplified for V_κ. Both VH and V« genes were cloned by anchored PCR .

Anchored PCR was carried out as described by Chen and Platsucas {Scand. J. Immunol., 1992; 35: 539-549). For cloning the V_κ gene, double-stranded cDNA was

prepared using the Λ/ofl-MAK1 primer (5'-TGCGGCCGCTGTAGGTGCTGTCTTT-3' SEQ ID NO:5). Annealed adaptors AD1 (5'-GGAATTCACTCGTTATTCTCGGA-3' SEQ ID NO:6) and AD2 (5'-TCCGAGAATAACGAGTG-3' SEQ ID NO:7) were ligated to both 5' and 3' termini of the double-stranded cDNA. Adaptors at the 3' ends were removed by Not\ digestion. The digested product was used as the

template in PCR with the AD1 oligonucleotide as the 5' primer and MAK2 (5'- CATTGAAAGCTTTGGGGTAGAAGTTGTTC-3' SEQ ID NO:8) as the 3' primer. DNA fragments of approximately 500 bp were cloned into pUC19. Twelve clones were selected for further analysis. Seven clones were found to contain the CDR3 sequence specific for the Sp2/0 V message, and presumably were derived from the

aberrant K light chain messages of the fusion partner for the 166-32 hybridoma cell

line. The Λ/ofl-MAK1 and MAK2 oligonucleotides were derived from the murine CK 38

region, and were 182 and 84 bp, respectively, downstream from the first bp of the

CK gene. Three clones were analyzed by DNA sequencing, yielding sequences

encompassing part of murine CK, the complete VK, and the leader peptide.

For cloning the V_H gene, double-stranded cDNA was prepared using the

Λ/ofl-MAG1 primer (5'-CGCGGCCGCAGCTGCTCAGAGTGTAGA-3' SEQ ID NO:9).

Annealed adaptors AD1 and AD2 were ligated to both 5' and 3' termini of the

double-stranded cDNA. Adaptors at the 3' ends were removed by Not\ digestion.

The digested product was used as the template in PCR with the AD1

oligonucleotide and MAG2 (5'-CGGTAAGCTTCACTGGCTCAGGGAAATA-3' SEQ

ID NO: 10) as primers. DNA fragments of 500 to 600 bp in length were cloned into

pUC19. The Λ/ofl-MAG1 and MAG2 oligonucleotides were derived from the murine

Cγ 1 region, and were 180 and 93 bp, respectively, downstream from the first bp of

the murine Cγ 1 gene. Three clones were analyzed by DNA sequencing, yielding

sequences encompassing part of murine Cγ 1 , the complete V_H, and the leader

peptide.

(2) Construction of expression vectors for chimerid 66-32 IgG and Fab

The V_H and VK genes were used as templates in PCR for adding the Kozak

sequence to the 5' end and the splice donor to the 3' end. After the sequences

were analyzed to confirm the absence of PCR errors, the V_H and VK genes were

inserted into expression vector cassettes containing human Cγ 1 and C,

respectively, to give pSV2neoV_H-huCγ1 and pSV2neoV-huCκ. CsCl gradient- 39

purified plasmid DNAs of the heavy- and light-chain vectors were used to transfect

COS cells by electroporation. After 48 hours, the culture supernatant was tested

by ELISA to contain approximately 200 ng/ml of chimeric IgG. The cells were

harvested and total RNA was prepared. First strand cDNA was synthesized from

the total RNA using oligo dT as the primer. This cDNA was used as the template

in PCR to generate the Fd and K DNA fragments. For the Fd gene, PCR was

carried out using (δ'-AAGAAGCTTGCCGCCACCATGGATTGGCTGTGGAACT-S'

SEQ ID NO:11) as the 5' primer and a CH1 -derived 3' primer (5^*-

CGGGATCCTCAAACTTTCTTGTCCACCTTGG-3' SEQ ID NO: 12). DNA sequence

was confirmed to contain the complete V_H and the CH1 domain of human lgG1.

After digestion with the proper enzymes, the Fd DNA fragments were inserted at the

H/ndlll and SamHI restriction sites of the expression vector cassette pSV2dhfr-TUS

to give pSV2dhfrFd (Fig. 12A).

For the K gene, PCR was carried out using (5-

AAGAAAGCTTGCCGCCACCATGTTCTCACTAGCTCT-3' SEQ ID NO: 13) as the

5' primer and a Cκ-derived 3' primer (S'-CGGGATCCTTCTCCCTCTAACACTCT-S'

SEQ ID NO: 14). DNA sequence was confirmed to contain the complete VK and

human CK regions. After digestion with proper restriction enzymes, the K DNA

fragments were inserted at the Hind III and SamHI restriction sites of the expression

vector cassette pSV2neo-TUS to give pSV2neoκ (Fig. 12B). The expression of

both Fd and K genes are driven by the HCMV-derived enhancer and promoter 40

elements. Since the Fd gene does not include the cysteine amino acid residue

involved in the inter-chain disulfide bond, this recombinant chimeric Fab contains

non-covalently linked heavy- and light-chains. This chimeric Fab is designated as

cFab.

To obtain recombinant Fab with an inter-heavy and light chain disulfide bond,

the above Fd gene was extended to include the coding sequence for additional 9

amino acids (EPKSCDKTH SEQ ID NO:12) from the hinge region of human IgG

The SsfEII-SamHI DNA segment encoding 30 amino acids at the 3' end of the Fd

gene was replaced with DNA segments encoding the extended Fd. Sequence of

the extended Fd with additional 9 amino acids from the hinge region of human IgGI

was confirmed by DNA sequencing. This Fd/9aa gene was inserted into the

expression vector cassette pSV2dhfr-TUS to give pSV2dhfrFd/9aa. This chimeric

Fab is designated as cFab/9aa.

(3) Expression of chimeric 166-32 IgG and Fab

To generate cell lines secreting chimeric 166-32 IgG, NSO cells were

transfected with purified plasmid DNAs of pSV2neoV_H-huCγ1 and pSV2neoV-huCκ

by electroporation. Transfected cells were selected in the presence of 0.7mg/ml

G418. Cells were grown in a 250-ml spinner flask using serum-containing medium.

To generate cell lines secreting chimeric 166-32 Fab, CHO cells were

transfected with purified plasmid DNAs of pSV2dhfrFd (or pSV2dhfrFd/9aa) and

pSV2neoκ by electroporation. Transfected cells were selected in the presence of 41

G418 and methotrexate. Selected cell lines were amplified in increasing

concentrations of methotrexate. Cells were single-cell subcloned by limiting dilution.

High-producing single-cell subcloned cell lines were then grown in 100-ml spinner

culture using serum-free medium.

(4) Purification of chimeric 166-32 IgG

Culture supernatant of 100 ml spinner culture was loaded on a 10-ml

PROSEP-A column (Bioprocessing, Inc., Princeton, NJ). The column was washed

with 10 bed volumes of PBS. The bound antibody was eluted with 50 mM citrate

buffer, pH 3.0. Equal volume of 1M Hepes, pH 8.0 was added to the fraction

containing the purified antibody to adjust the pH to 7.0. Residual salts were

removed by buffer exchange with PBS by Millipore membrane ultrafiltration (M.W.

cut-off: 3,000). The protein concentration of the purified antibody was determined

by the BCA method (Pierce).

(5) Purification of chimeric 166-32 Fab

Chimeric 166-32 Fab was purified by affinity chromatography using a mouse

anti-idiotypic MAb to MAb 166-32. The anti-id iotypic MAb is designated as MAb

172-25-3. It was made by immunizing mice with MAb 166-32 conjugated with

keyhole limpet hemocyanin (KLH) and screening for specific MAb 166-32 binding

could be competed with human factor D.

The affinity chromatography matrix was prepared by mixing 25 mg MAb 172-

25-3 with 5 ml of dry azlactone beads (UltraLink Biosupport Medium, Pierce) in a 42

coupling buffer (OJ M borate and 0.75 M Na₂S0₄, pH 9.0) for 2 hours at room

temperature. Then the residual reactive sites were blocked with 1 M ethanoiamine,

pH 9.0 for 2.5 hours at room temperature. The beads were then washed in a buffer

containing 10 mM Tris, 0.15 M NaCI, 5 mM EDTA, 1% Triton X-100 and 0.02%

NaN₃, pH 8.0) and stored then at 4°C

For purification, 100 ml of supernatant from spinner cultures of CHO cells

producing cFab or cFab/9aa were loaded onto the affinity column coupled with MAb

172-25-3. The column was then washed thoroughly with PBS before the bound Fab

was eluted 50 mM diethylamine, pH 11.5. Residual salts were removed by buffer

exchange as described above. The protein concentration of the purified Fab was

determined by the BCA method (Pierce).

(6) SDS-PAGE of chimeric 166-32 IgG, cFab and cFab/9aa

The purified chimeric 166-32 IgG, cFab and cFab/9aa were analyzed for

purity and molecular size by SDS-PAGE. The proteins were treated with sample

buffers with or without mercaptoethanol. The samples were then run on pre-cast

gels (12.5%) (Amersham Pharmacia Biotech, Uppsala, Sweden) together with pre-

stained molecular weight standard (low molecular weight range) (BIO-F?AD

Laboratories, Hercules, CA) using the PhastSystem (Amersham Pharmacia

Biotech). The gels were then stained in Coomassie Brilliant Blue solution (BIO-RAD)

for 5 minutes and then de-stained in an aqueous solution containing 40% methanol

and 10% acetic acid. 43

The results of an SDS-PAGE of cFab, cFab/9aa and chimeric IgG treated

under both non-reducing and reducing condition, showed chimeric IgG has a protein

band of 150 kD, and two protein bands of heavy (HC) and light (LC) chains of

approximately 50 kD and 29 kD, respectively. As expected, cFab/9aa had only 1

protein band of about 40 kD under non-reducing condition, indicating that the heavy

and light chains are linked by an inter-chain disulfide bond. On the other hand, cFab

showed two protein bands under non-reducing condition, indicating that the heavy

and light chains are not linked by an inter-chain disulfide bond.

(7) Determination of the activities of chimeric 166-32 IgG, cFab and cFab/9aa

The activities of chimeric 166-32 IgG, cFab and cFab/9aa were determined

by using the alternative complement hemolytic assay described above. Fig. 13

shows that the murine and chimeric forms of MAb 166-32 have identical potency in

inhibiting factor D. Fig. 14 shows that cFab and cFab/9aa have almost identical

potency in inhibiting factor D. Most importantly, the potency of the two forms of

chimeric Fab is identical to that of the chimeric IgG, although there are two binding

sites per IgG molecule. Together, the results demonstrate that chimeric IgG, cFab

and cFab/9aa retain the potency of the parental murine MAb 166-32.

Example 10: Protection of complement-mediated tissue damage by Mab 166-32 in an ex vivo model of rabbit hearts perfused with human plasma

Activation of the complement system contributes to hyperacute rejection of

xenografts. It may occur as a result of binding of complement fixing antibodies, the 44

direct activation of complement via the alternative pathway on foreign cell surfaces,

and/or the failure of complement regulation by the foreign organ (J.L. Platt et al.,

Transplantation, 1991 ; 52: 937-947). Depending on the particular species-species

interaction, complement activation through either the classical or alternative

pathway predominates, though in some cases both pathways may be operative (T.

Takahashi et al., Immunol. Res., 1997; 16: 273-297). Previous studies have shown

that hyperacute rejection can occur in the absence of anti-donor antibodies via

activation of the alternative pathway (P.S. Johnston et al., Transplant. Proc, 1991;

23: 877-879).

To demonstrate the importance of the alternative complement pathway in

tissue damage, the anti-factor D MAb 166-32 was tested using an ex vivo model in

which isolated rabbit hearts were perfused with diluted human plasma. This model

was previously shown to cause damage to the rabbit myocardium due to the

activation of the alternative complement pathway (M.R. Gralinski et al.,

lmmunopharmacologyA 9Q6: 34: 79-88).

(1) Langendorff perfused rabbit hearts:

Male, New Zealand White rabbits (2.2-2.4 kg) were euthanized by cervical

dislocation. The hearts were removed rapidly and attached to a cannula for

perfusion through the aorta. The perfusion medium consisted of a recirculating

volume (250 ml) modified Krebs-Henseleit (K-H) buffer (pH 7.4, 37°C) delivered at

a constant rate of 20-25 ml/min. The composition of the buffer medium in millimoles 45

per liter was as follows: NaCI, 117; KCI, 4.0; CaCI₂. H₂0, 2.4; MgCI₂.6H₂0, 1.2;

NaHC0₃, 25; KH₂P0₄, 1.1 ; glucose, 5.0; monosodium L-glutamate, 5.0; sodium

pyruvate, 2.0; and BSA, 0.25% (w/v). The K-H buffer passed through a gas porous

"lung" consisting of Silastic™ Laboratory Grade Tubing (Dow Corning, Midland, Ml),

55.49 meters in length, with an inner diameter of 1.47 mm and an outer diameter

of 1.96 mm. The membranous "lung" was exposed continuously to a mixture of

95% 0₂/5% C0₂ to obtain an oxygen partial pressure within the perfusion medium

equal to 500 mm Hg. The hearts were paced throughout the protocol via electrodes

attached to the right atrium. Pacing stimuli (3 Hz, 4 msec duration) were delivered

from a laboratory square wave generator (Grass SD-5, Quincy, MA). The pulmonary

artery was cannulated with polyethylene tubing to facilitate collection of the

pulmonary artery effluent, representing the coronary venous return. The superior

and inferior vena cava and the pulmonary veins were ligated to prevent exit of the

perfusate from the severed vessels. A left ventricular drain, thermistor probe, and

latex balloon were inserted via the left atrium and positioned in the left ventricle. The

fluid-filled latex balloon was connected with rigid tubing to a pressure transducer to

permit for measurement of left ventricular systolic and end-diastolic pressures. The

left ventricular developed pressure is defined as the difference between the left

ventricular systolic and end-diastolic pressures. The intraventricular balloon was

expanded with distilled water to achieve an initial baseline left ventricular end-

diastolic pressure of 5 mm Hg. Coronary perfusion pressure was measured with a 46

pressure transducer connected to a side-arm of the aortic cannula. All

hemodynamic variables were monitored continuously using a multichannel recorder

(Grass Polygraph 79D, Quincy, MA). The isolated hearts were maintained at 37°C

throughout the experimental period by enclosing them in a temperature-regulated

double-lumen glass chamber and passing the perfusion medium through a heated

reservoir and delivery system.

(2) Antibody treatments:

Two treatment groups were used to determine the ability of anti-factor D MAb

166-32 to inhibit the effects of complement activation in isolated rabbit hearts

perfused with human plasma. Group 1 : Isotype-matched negative group, consisted

of hearts perfused with 4% human plasma in the presence of 0.3 μg/ml of MAb G3-

519 (n=6) specific to HIV-1 gp120. Group 2: Treatment group, consisted of hearts

perfused with 4% human plasma in the presence of 0.3 μg/ml of MAb 166-32 (n=6).

The human plasma was separated from freshly collected whole blood and stored

at -80°C until use. This percentage of human plasma was chosen because it

severely impairs myocardial function over a reasonable length of time and allows

one to assess the efficacy of a treatment regimen. Higher concentrations of human

plasma in this system cause the heart to rapidly develop contracture, making it

difficult to analyze the effects of a drug at a low concentration. Preliminary studies

had determined that 0.3 μg/ml was the minimal effective concentration that could

protect the isolated heart from the effects of complement activation. All hearts 47

underwent 10-15 minutes of equilibration in the Langendorff apparatus before

addition of either antibody to the perfusion medium. Ten minutes after the addition

of antibody, 4 % human plasma was added to the perfusion medium (250 ml,

recirculating). Hemodynamic variables, including coronary perfusion pressure

(CPP), left ventricular systolic pressure (LVSP), left ventricular end-diastolic

pressure (LVEDP), and left ventricular developed pressure (LVDP) were recorded

before the addition of antibody (baseline), before the addition of 4% human plasma,

and every 10 minutes thereafter, for 60 minutes.

MAb 166-32 (0.3 μg/ml) attenuated the increase in coronary perfusion

pressure (CPP) when compared to hearts treated with MAb G3-519 (0.3 μg/ml)

when exposed to 4% human plasma. A rise in CPP indicates coronary vascular

resistance which is often associated with myocardial tissue damage. Isolated rabbit

hearts perfused with MAb 166-32 maintained left ventricular end-diastolic pressure

(LVEDP), in marked contrast to the results obtained with MAb G3-519 (Fig. 15).

The latter group of hearts developed a progressive increase in LVEDP after

exposure to 4% human plasma, indicating contracture or a failure of the ventricle

to relax during diastole (Fig. 15). MAb 166-32 also attenuated the decrease in left

ventricular developed pressure (LVDP) compared to the hearts treated with MAb

G3-519 after exposure to diluted human plasma. (Fig. 15).

Fig. 16 depicts representative recordings of cardiac function obtained before

and after 10, 30 and 60 minutes of perfusion in the presence of 4% human plasma. 48

The progressive increase in the LVEDP and the decrease in the LVDP of a MAb

G3-519 treated rabbit heart is obvious after 10 minutes with progressive

deterioration of ventricular function over the subsequent 50 minutes. On the other

hand, preservation of ventricular function of a heart treated with MAb 166-32 is

evident over the period of 60 minutes.

Taken together, the hemodynamic data indicate that anti-factor D MAb 166-

32 protects isolated rabbit hearts from human complement-mediated injury as

manifested by an overall maintenance of myocardial function after challenge with

human plasma.

(3) Complement Bb ELISA:

Factor D catalyzes the cleavage of bound factor B, yielding the Ba and Bb

fragments. The concentration of Bb present serves as an index of factor D activity.

The concentrations of activated component Bb in the lymphatic fluid collected from

the isolated rabbit hearts were measured using a commercially available ELISA kit

(Quidel). The assays made use of a MAb directed against human complement Bb

to measure the activation of human complement system during perfusion of rabbit

hearts in the presence of human plasma. Lymphatic effluent from the severed

lymphatic vessels was collected from the apex of the heart, snap-frozen in liquid

nitrogen, and stored at -70°C until assayed. The flow rate of the lymphatic effluent

was recorded and accounted for in order to normalize the Bb concentration. 49

Ten minutes after perfusion with 4% human plasma and at every time point

thereafter, a significantly (p< 0.05) lower concentration of Bb was present in

lymphatic effluents from hearts treated with MAb 166-32 as compared to hearts

treated with MAb G3-519 (Fig. 17). The decrease in the production of the

complement activation product Bb in the MAb 166-32 treated rabbit hearts confirms

the inhibitory activity of the antibody on factor D.

(4) Immunohistochemical localization of C5b-9 deposition:

At the completion of the protocol, hearts were removed from the Langendorff

apparatus, cut into transverse sections, and frozen in liquid nitrogen. The apex and

atrial tissues were discarded. Sections were embedded in O.C.T. compound

embedding medium (Miles, Inc., Ekhart, IN), cut to 3m, and placed on poly-L-lysine

coated slides. After rinsing with phosphate-buffered saline (PBS), sections were

incubated with 4% paraformaldehyde in PBS at room temperature. Heart sections

were rinsed with PBS and incubated with 1 % BSA for 15 minutes to minimize non-

specific staining. After rinsing with PBS, sections were incubated with a murine anti-

human C5b-9 MAb (Quidel) at a 1 :1 ,000 dilution at room temperature for 1 hour.

Sections were rinsed with PBS again and then incubated at room temperature for

1 hour with a goat anti-murine FITC conjugated antibody (Sigma) at a 1:320 dilution.

After a final rinse with PBS, sections were mounted with Fluoromount-G (Electron

Microscopy Sciences, Fort Washington, PA) and protected with a coverslip.

Controls included sections in which the primary antibody was omitted and sections 50

in which an isotype-matched murine antibody IgGI (Sigma) was substituted for the

anti-C5b-9 MAb.

Heart sections from MAb 166-32 and MAb G3-519 treated hearts were

examined for human MAC (or C5b-9) deposition by immunofiuorescence staining.

MAb 166-32 treated hearts exhibited a reduction in MAC deposition as compared

to MAb G3-519 treated hearts.

In all, the data from the ex vivo studies of rabbit hearts demonstrate the

efficacy of MAb 166-32 in preventing cardiac tissue injury as a result of the inhibition

of the alternative complement pathway. Inhibition of complement activation has

been shown to prolong the survival of xenografts (S.C. Makrides, Pharmacological

Rev., 1998, 50: 59-87). Therefore, MAb 166-32 could potentially be used as a

therapeutic agent to protect xenografts from destruction by human plasma.

Example 11 : Inhibitory effects of MAb 166-32 on complement activation and inflammatory reactions in an extracorporeal circulation model of cardiopulmonary bypass

Patients undergoing cardiopulmonary bypass (CPB) frequently manifest a

generalized systemic inflammatory response syndrome. Clinically, these reactions

are reflected in postoperative leukocytosis, fever, and extravascular fluid

accumulation which may lead to prolonged recovery and occasionally with serious

organ dysfunction (J.K. Kirklin et al., J. Thorac. Cardiovasc. Surg., 1983; 86: 845-

857; L. Nilsson et al., Scand. J. Thorac. Cardiovasc. Surg., 1988; 22: 51-53; P.W.

Weerwind et al., J. Thorac. Cardiovasc. Surg., 1995; 110: 1633-1641). The 51

inflammatory responses consist of humoral and cellular changes that contribute to

both tissue injury and impaired hemostasis. Complement activation has been

implicated as the important cause of the systemic inflammatory reaction (P. Haslam

et al., Anaesthesia, 1980; 25: 22-26; A. Salama et al., N. Eng. J. Med., 1980; 318:

408-414; J. Steinberg et al., J. Thorac. Cardiovasc. Surg., 1993; 106: 1008-1016).

Complement activation is attributed to the interaction between the blood and the

surface of the extracorporeal circuit constituting CPB machines (D. Royston, J.

Cardiothorac. Vase. Anesth., 1997; 11: 341-354). Primary inflammatory substances

are generated after activation of the complement system, including the

anaphylatoxins C3a and C5a, the opsonin C3b, and the membrane attack complex

C5b-9. C5a has been shown to upregulate CD11b (integrin) and CD18 (integrin) of

MAC-1 complex in polymorphonuclear cells PMN (comprising mainly neutrophils)

in vitro (M.P. Fletcher et al., Am. J. Physioi, 1993; 265: H1750-H1761) and to

induce lysosomal enzyme release by PMN. C5b-9 can induce the expression of P-

selectin (CD62P) on platelets (T. Wiedmer et al., Blood, 1991 ; 78: 2880-2886), and

both C5a and C5b-9 induce surface expression of P-selectin on endothelial cells

(K.E. Foreman et al., J. Clin. /nvesf.,1994; 94: 1147-1155). C3a and C5a stimulate

chemotaxis of human mast cells (K. Hartmann et al., Blood, 1997; 89: 2868-2870)

and trigger the release of histamine (Y. Kubota, J. Dermatol., 1992; 19: 19-26)

which induces vascular permeability (T.J. Williams, Agents Actions, 1983; 13: 451-

455). 52

In vitro recirculation of whole blood in an extracorporeal bypass circuit has been

used extensively as a model to simulate leukocytes (J. Kappelamyer et al., Circ.

Res., 1993; 72: 1075-1081 ; N. Moat et al., Ann. Thorac. Surg., 1993; 56: 1509-

1514; CS. Rinder et al., J. Clin. Invest, 1995: 96: 1564-1572) and platelets (V.L

Jr. Hennesy et al., Am. J. Physiot, 1977; 2132: H622-H628; Y. Wachtfogel et al.,

J. Lab. Clin. Med., 1985; 105: 601-607; CS. Rinder et al., ibid) changes and

complement activation (P.G. Loubser, Perfusion, 1987; 2: 219-222; CS. Rinder et

al., ibid; S . Baksaas et al., Perfusion, 1998; 13: 429-436) in CPB. The

effectiveness of the anti-factor D MAb 166-32 to inhibit the cellular and complement

activation in human whole blood was studied using this extracorporeal circulation

model for CPB.

(1) Extracorporeal circuit preparation:

Extracorporeal circuits were assembled using a hollow-fiber pediatric membrane

oxygenator with an integrated heat exchanger module (D 901 LILLPUT 1 ; DIDECO,

Mirandola (MO), Italy), a pediatric venous reservoir with an integrated cardiotomy

filter (D 752 Venomidicard; DIDECO), a perfusion tubing set (Sorin Biomedical, Inc.,

Irvine, CA) and a multiflow roller pump (Stockert Instruments GmbH, Munich,

Germany). Oxygenator and circuitry were primed with Plasma-Lyte A solution

(Baxter Healthcare Corp., Deerfield, IL). The prime was warmed to 32°C with a

cooler-heater (Sarns; 3M Health Care, Ann Arbor, Ml) and circulated at 500 ml/min,

while the sweep gas flow was maintained at 0.25 liters per min using 100% oxygen. 53

The sweep gas was changed to a mixture of oxygen (95%) and carbon dioxide (5%)

after the blood was added to the circuit. The pH, PC0₂, P0₂, and perfusate

temperature were continuously monitored throughout the recirculation period.

Sodium bicarbonate was added as required to maintain pH in the range of 7.25-

7.40.

(2) Extracorporeal circuit operation and sampling:

450 ml of blood were drawn over 5-10 minutes from healthy volunteers on no

medications into a transfer pack (Haemo-Pak; Chartermed, Inc., Lakewood, NJ)

containing porcine heparin (5 units/ml, final concentration; Elkins-Sinn, Cherry Hill,

NJ) and the anti-factor D MAb 166-32 or the isotype-matched negative control MAb

G3-519 (18 μg/ml final concentration). This concentration of antibody is equivalent

to about 1.5 times the molar concentration of factor D in the blood. Prior to the

addition of the blood to the extracorporeal circuit, a blood sample was taken from

the transfer pack as the "pre-circuit" sample, designated the "-10 minute sample".

The blood was then added to the reservoir via the prime port. Prime fluid was

simultaneously withdrawn distal to the oxygenator outlet to yield a final circuit

volume of 600 ml and a final hematocrit of 25-28%. Blood was circulated with prime,

and complete mixing was accomplished within 3 minutes; a baseline sample was

drawn and designated as time 0. To mimic usual procedures of surgical operation

under hypothermia, the circuit was then cooled to 27°C for 70 minutes after which 54

it was rewarmed to 37°C for another 50 minutes (for a total of 120 minutes of

recirculation).

Blood samples were also drawn at 10, 25, 40, 55, 70, 80 and 120 minutes

during the recirculation. Plasma samples were prepared by immediate centrifugation

at 2,000 x g at 4°C Aliquots for the alternative pathway hemolytic assays and

neutrophil-specific myeloperoxidase assays were snap-frozen on dry ice and then

stored at -80°C Aliquots for measurement of complements C3a, C4d, sC5b-9, and

Bb by ELISA were immediately mixed with equal volume of a Specimen Stabilizing

Medium (Quidel), snap-frozen on dry ice, and then stored at -80°C Samples of

whole blood were also collected for immunostaining of the activation cell surface

markers CD11b and CD62P on neutrophils and platelets, respectively. To prevent

subsequent complement activation of the whole blood samples during the staining

procedure, 10 μl of 1 M EDTA were added to every ml of whole blood to give a final

concentration of 10 mM.

(3) Alternative pathway hemolytic assays:

The alternative complement activity in the plasma samples at different time

points from the MAb 166-32 treated and the MAb G3-519 treated circuits were

tested using rabbit red blood ceils as described above. Fifty microliters of each

sample (20%) were mixed with 50 μl of GVB/Mg-EGTA buffer before addition of 30

μl of rabbit red blood cells (1.7 x 10⁸ cells/ml). After incubation at 37°C for 30 55

minutes, the supernatants were collected and OD read at 405 nm using an ELISA

plate reader.

Fig. 18 shows that the alternative complement activity in the MAb 166-32 treated

circuit was completely inhibited by the antibody, whereas MAb G3-519 had no effect

on the complement activity when used in the corresponding circuit. The results

indicate MAb 166-32 is a potent inhibitor of the alternative complement pathway.

Even at a molar ratio of only 1.5: 1 (MAb : factor D), MAb 166-32 can completely

inhibit the alternative complement activity.

(4) Assays of complement activation products:

In addition to the hemolytic assays described above, the plasma samples from

the two extracorporeal circuits were are tested for the levels of C3a, sC5b-9, Bb,

and C4d. These substances were quantitated using commercially available ELISA

kits (Quidel) according to the manufacturerer's manuals. Like C5a, sC5b-9 is an

alternative marker for C5 convertase activity in the complement cascade. Both C5a

and sC5b-9 are produced as a result of cleavage of C5 by C5 convertase.

Complement Bb is a specific marker for the activation of the alternative complement

pathway, whereas C4d a specific marker for the activation of the classical pathway.

Figs. 19 and 20 show that MAb 166-32 inhibited effectively the production of

C3a and sC5b-9 respectively, whereas the isotype-matched negative control MAb

G3-519 did not. The specificity and potency of MAb 166-32 are further elucidated

in Figs. 21 and 22. The production of Bb by the alternative complement pathway 56

was completely inhibited by MAb 166-32, whereas the levels of Bb in the G3-519

circuit increase over time during the recirculation. Interestingly, the levels of C4d in

both MAb 166-32 and G3-519 circuit did not vary significantly over time. The latter

results on Bb and C4d levels strongly indicate that the complement activation in

extracorporeal circulation is mediated mainly via the alternative pathway.

In sum, the results indicate that MAb 166-32 is a potent inhibitor of the

alternative complement pathway. Inhibition of factor D can abolish the complement

activation in the subsequent steps of the cascade as manifested by the reduction

in C3a and sC5b-9 formation.

(5) Assays for the activation of neutrophils and platelets:

The activation of neutrophils and platelets were quantitated by measuring the

levels of the cell-surface expression of CD11b and CD62P on neutrophils and

platelets, respectively. For CD11b labeling of neutrophils, 100 μl of whole blood

collected from the circuits were immediately incubated with 20 μl of phycoerythrin

(PE)-anti-CD11b antibody (clone D12, Becton Dickinson, San Jose, CA) for 10

minutes at room temperature in a microcentrifuge tube. Then 1.4 ml of FACS Lysing

Solution (Becton Dickinson) was added for 10 minutes at room temperature to lyse

red blood cells and to fix leukocytes. The microcentrifuge tubes were centrifuged at

300 x g for 5 minutes. The supernatant was aspirated and the cells resuspended

in PBS for washing. The microcentrifuge tubes were spun again, the supernatant

aspirated, and the cells finally resuspended in 0.5 ml of 1% paraformaldehyde 57

overnight prior to analysis using an EPIC-XL flow cytometer (Coulter Corp., Miami,

FL). For double labeling to concomitantly identify the neutrophil population, 5 μl of

fluorescein isothiocyanate (FITC)-anti-CD15 antibody (clone MMA, Becton

Dickinson) were added for incubation together with PE-anti-CD11b antibody.

For CD62P labeling of platelets, 40 μl of whole blood collected from the circuits

were immediately incubated with 20 μl of PE-anti-CD62P antibody (clone AC1.2,

Becton Dickinson) for 10 minutes at room temperature in a microcentrifuge tube.

Then the mixture was treated with FACS Lysing Solution as described above. The

microcentrifuge tubes were centrifuged at 2,000 x g for 5 minutes. The platelets

were washed in PBS, fixed in 1 % paraformaldehyde and then analyzed as

described above. For double labeling to concomitantly identify the platelet

population, 5 μl of FITC-anti-CD42a antibody were added for incubation together

with PE-anti-CD62P antibody.

For flow cytometric measurement, the PMN (containing mainly neutrophils) and

platelet populations were identified by live-gating based on forward- versus side-

scatter parameters and specific staining with FITC-anti-CD15 antibody and FITC-

anti-CD42a antibody, respectively. The background staining was gated using

isotype-matched labeled antibodies. The intensity of expression of CD11b and

CD62P was represented by mean fluorescence intensity (MFI).

Fig. 23 shows that neutrophils from the MAb 166-32 treated extracorporeal

circuit showed substantially lower expression of CD11b as compared to those from 58

the MAb G3-519 treated circuit. These data together with the others above indicate

that inhibition of the alternative complement activation by MAb 166-32 can prevent

activation of neutrophils.

Similarly, Fig. 24 shows that platelets from the MAb 166-32 treated

extracoφoreal circuit showed substantially lower expression of CD62P as compared

to those from the MAb G3-519 treated circuit. Again these data together with those

above indicate that inhibition of the alternative complement activation by MAb 166-

32 can prevent activation of platelets.

(6) Assay of neutrophil-specific myeloperoxidase (MPO)

The degree of activation of neutrophils was also measured using a

commercial ELISA kit (R & D Systems, Inc., Minneapolis, MN) to quantitate the

amount of neutrophil-specific myeloperoxidase (MPO) in the plasma samples from

the extracorporeal circuits. MPO is stored in primary granules (azurophilic) of

neutrophils. It is released wheη neutrophils undergo de-granulation during

activation. Therefore MPO is a soluble marker for neutrophil activation. The assays

were performed according to the manufacturer's manual. Briefly, samples were

incubated in the cells of a microplate, which have been coated with a first MAb to

MPO. The MPO-MAb complex is labeled with a biotin-linked polyclonal antibody

prepared from goat MPO-antisera. The final step of the assay is based on a biotin-

avidin coupling in which avidin has been covalently linked to alkaline phosphatase. 59

The amount of MPO in each sample is enzymatically measured upon addition of the substrate 4-nitrophenyl-phosphate (pNPP), by reading OD at 405 nm.

Fig. 25 shows that the levels of MPO in the MAb 166-32 treated circuit were substantially lower than those in the MAb G3-519 circuit. The results corroborate with those on the expression of CD11 b in the immunofluorometric studies described above.

Taken together, the data on complement, neutrophils and platelets support the notion that effective inhibition of the alternative complement activation in extracorporeal circulation by the anti-factor D MAb 166-32 can abolish the formation

of inflammatory substances C3a, C5a and sC5b-9 and thus reduce the activation of neutrophils and platelets. It is anticipated that MAb 166-32, as well as its fragments, homologues, analogues and small molecule counterparts thereof, will be effective in preventing or reducing clinical inflammatory reactions caused by

CPB. Example 12: Study of the effects of MAb 166-32 in a dog model of ischemia and reperfusion injury

A study was designed to examine whether MAb 166-32 would protect myocardial tissues from injury due to ischemia and reperfusion in dogs, although it

was recognized at the outset that dog might not be a desirable animal model to study this indication for MAb 166-32. The ability of MAb 166-32 to neutralize dog factor D in hemolytic assays was at least 10 times less effective as compared to human factor D (see Example 7). Because of the limited amount of MAb 166-32 60

available at the time, MAb 166-32 was administered into the heart via the

intracoronary blood vessel. It was hoped that the antibody would build up a

concentration of at least 60 μg/ml in the coronary blood in order to inhibit completely

dog factor D in the heart. The dosage was calculated to be 3.15 mg/kg/infusion for

6 infusions. MAb G3-519 was used as the isotype-matched control in the study.

Briefly, purpose-bred hound dogs were anaesthetized. A left thoracotomy

was performed at the fourth intercostal space to expose the heart. The proximal left

circumflex coronary artery was isolated and ligated for 90 minutes for induction of

ischemia that was followed by 6 hours of reperfusion. The antibody was given 6

times at 30 minutes before ischemia, 10 minutes before reperfusion, and then 75,

150, 225, 300 minutes during reperfusion. Radioactive microspheres were injected

at different time points to measure regional blood flow. At the end of the

experiments, hearts were perfused with Evans blue dye and triphenyltetrazolium for

measurement of area at risk and infarct size, respectively. Coronary lymph and

whole blood from the jugular vein were collected before ischemia and at the end of

the experiment. These samples were used to measure the concentration of the

injected antibodies and alternative pathway hemolytic activity.

The results show that the highest achievable concentration of MAb 166-32

in the coronary lymph was about 30 μg/ml, which is well below the concentration

required for complete inhibition of dog factor D in the coronary circulation. The

antibody was also detected in the systemic circulation, suggesting that the injected 61

antibody dissipated outside of the heart. The data from the hemolytic assays show

that alternative complement activity was not reduced; as is consistent with the fact

that the concentration of the antibody was low. Therefore, it is not possible to draw

a conclusion on the effect of MAb 166-32 in reperfusion from these experiments in

dogs.

The foregoing description, terms, expressions and examples are exemplary

only and not limiting. The invention includes all equivalents of the foregoing

embodiments, both known and unknown. The invention is limited only by the claims

which follow and not by any statement in any other portion of this document or in

any other source.

Claims

62WHAT IS CLAIMED IS:

1. An inhibitor of complement activation which binds factor D and at a molar

ratio of about 1.5:1 (inhibitor: factor D) can inhibit complement activation.

2. An inhibitor of complement activation which binds to factor D and at a molar

ratio of less than 80:1 (inhibitor: factor D) can inhibit complement activation.

3. An inhibitor of complement activation which binds to factor D and inhibits

complement activation at a molar ratio of inhibitor to factor D such that it is

suitable for therapeutic use.

4. The inhibitor of claims 1 , 2 or 3 wherein the inhibition of complement

activation is determined in vitro.

5. The inhibitor of claim 4 wherein the inhibition of complement activation is

determined in vitro by an extracorporeal assay.

6. An Inhibitor of complement activation which binds to a region of human factor

D between (and including) amino acid residue numbers Cys154 and Cys170.

7. The inhibitor of claim 6 which does not bind to human factor D if amino acid

residues Arg156, His159 and Leu168 are absent.

8. The inhibitor of any of claims 1 to 3, 6 or 7 which is an antibody or a

homologue, analogue or fragment thereof, a peptide, an oligonucleotide, a

peptidomimetic or an organic compound. 63

9. The inhibitor of claim 8 wherein the antibody fragments are Fab, (Fab')₂ Fv

or single chain Fv.

10. The inhibitor of claim 9 wherein the antibody is a chimeric, deimmunized,

humanized, deimmunised or human antibody.

11. The monoclonal antibody 166-32.

12. The hybridoma producing the monoclonal antibody 166-32, deposited at the

American Type Culture Collection under Accession number HB-12476.

13. A monoclonal antibody or a fragment, analogue or homologue thereof, or

a peptide, oligonucleotide, peptidomimetic or an organic compound which

binds to the same epitope on factor D as the antibody 166-32.

14. The fragment of claim 13 which is an are Fab, (Fab')₂ Fv or single chain Fv.

15. The chimeric form, having a mouse variable region and a human constant

region, of the Fab fragment of claim 14.

16. A cell line producing the monoclonal antibody or fragment thereof which

binds to the same epitope on factor D as the antibody 166-32.

17. A cell line producing the fragment of claim 14.

18. A cell line producing the chimeric Fab fragment of claim 15.

19. The chimeric form, having a mouse variable region and a human constant

region, of the monoclonal antibody 166-32.

20. The chimeric form, having a mouse variable region and a human constant

region, of the Fab fragment of the monoclonal antibody 166-32. 64

21. A method of treating diseases or conditions that are mediated by excessive

or uncontrolled activation of the complement system comprising

administering, in vivo or ex vivo, an inhibitor according to any claims 1 to 3,

6 and 7.

22. A method of treating diseases or conditions that are mediated by excessive

or uncontrolled activation of the complement system comprising

administering, in vivo or ex vivo, an inhibitor according to claim 8.

23. A method of treating diseases or conditions that are mediated by excessive

or uncontrolled activation of the complement system comprising

administering, in vivo or ex vivo, an inhibitor according to any claims 9 to 11 ,

13 to 15 or 19 and 20.

24. A method of treating complement-mediated conditions associated with

cardiopulmonary bypass comprising administering, in vivo or ex vivo, an

inhibitor according to any claims 1 to 3, 6 and 7.

25. A method of treating complement-mediated conditions associated with

cardiopulmonary bypass comprising administering, in vivo or ex vivo, an

inhibitor according to claim 8.

26. A method of treating complement-mediated conditions associated with

cardiopulmonary bypass comprising administering, in vivo or ex vivo, an

inhibitor according to any claims 9 to 11 , 13 to 15 or 19 and 20.