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CN116891859B - CaRAP2-12 gene and application thereof in regulating carotenoid synthesis in capsicum fruits - Google Patents

CaRAP2-12 gene and application thereof in regulating carotenoid synthesis in capsicum fruits Download PDF

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CN116891859B
CN116891859B CN202311000670.9A CN202311000670A CN116891859B CN 116891859 B CN116891859 B CN 116891859B CN 202311000670 A CN202311000670 A CN 202311000670A CN 116891859 B CN116891859 B CN 116891859B
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吕俊恒
李平平
邓明华
莫云容
赵凯
张祥
韩曙
杨正安
黄尧瑶
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Yunnan Agricultural University
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Abstract

The invention discloses CaRAP-12 genes and application thereof in regulating and controlling carotenoid synthesis in pepper fruits, belonging to the technical field of genetic engineering. The invention clones to key transcription factor CaRAP-12 for regulating and controlling the synthesis of carotenoid in capsicum fruits, and the nucleotide sequence is shown as SEQ ID No. 1. The invention constructs a transgenic plant for regulating and controlling the synthesis of carotenoid in pepper fruits by constructing recombinant plasmids containing CaRAP-12 genes and transgenic engineering bacteria. The CaRAP gene of the invention can enrich the cognition of the secondary metabolism of the pepper fruits, and can deeply understand the genetic mechanism of the pepper fruit quality formation, especially the color formation, thus providing theoretical and practical reference bases for realizing the selective agronomic character breeding of the pepper fruits.

Description

CaRAP2-12基因及在调控辣椒果实中类胡萝卜素合成中的 应用CaRAP2-12 gene and its application in regulating carotenoid synthesis in pepper fruit

技术领域Technical Field

本发明属于基因工程技术领域,具体涉及CaRAP2-12基因及在调控辣椒果实中类胡萝卜素合成中的应用。The invention belongs to the technical field of genetic engineering, and in particular relates to a CaRAP2-12 gene and an application thereof in regulating the synthesis of carotenoids in pepper fruits.

背景技术Background Art

辣椒(Capsicum spp.)是一种常见的辛辣调味品和蔬菜,属于茄科植物,是我国重要的农业和园艺作物。果色作为辣椒的重要特性之一,受到育种者和消费者的关注。辣椒果实中的色素主要包括叶绿素、类胡萝卜素和花青素。这些色素的存在和相对含量决定了辣椒果实的颜色。不同品种和成熟程度的辣椒会呈现出各种各样的色调,从绿色、黄色、橙色到红色和紫色。这种丰富多彩的色彩也为辣椒在烹饪和装饰上提供了不同的选择和应用。Pepper (Capsicum spp.) is a common spicy condiment and vegetable belonging to the Solanaceae family and an important agricultural and horticultural crop in my country. Fruit color, as one of the important characteristics of pepper, has attracted the attention of breeders and consumers. The pigments in pepper fruit mainly include chlorophyll, carotenoids and anthocyanins. The presence and relative content of these pigments determine the color of pepper fruit. Peppers of different varieties and maturity will show a variety of shades, from green, yellow, orange to red and purple. This rich and colorful color also provides different options and applications for peppers in cooking and decoration.

类胡萝卜素广泛存在于高等植物的叶、花和果实中,是一种天然的黄色、橙色、红色的亲脂分子,属于萜类色素。辣椒果实中类胡萝卜素在每100g鲜重0.03~3mg之间,主要由β-胡萝卜素、辣椒红素、叶黄素、玉米黄质等组成,在植物的生理、发育、生态和进化中起到重要作用。辣椒中的类胡萝卜素是通过甲基赤藓糖醇磷酸途径(MEP)合成双牻牛儿基二磷酸(GGPP)。第一步由八氢番茄红素合成酶(PSY)将两分子GGPP对头缩合形成八氢番茄红素;第二步经过脱氢酶和异构酶形成番茄红素;第三步是番茄红素环化形成α-胡萝卜素或β-胡萝卜素;第四步α-胡萝卜素和β-胡萝卜素羟基化分别形成叶黄素和玉米黄质;最后在辣椒红素/辣椒玉红素合成酶(CCS)催化下,将5,6-环氧玉米黄质和紫黄质分别转化为辣椒红素和辣椒玉红素,该步为辣椒中所独有的合成途径。Carotenoids are widely found in the leaves, flowers and fruits of higher plants. They are natural yellow, orange and red lipophilic molecules belonging to the terpenoid pigments. The carotenoid content in pepper fruit is between 0.03 and 3 mg per 100 g fresh weight. It is mainly composed of β-carotene, capsanthin, lutein, zeaxanthin, etc., and plays an important role in the physiology, development, ecology and evolution of plants. Carotenoids in pepper are synthesized into digeranyl diphosphate (GGPP) through the methylerythritol phosphate pathway (MEP). In the first step, phytoene synthase (PSY) condenses two GGPP molecules head-on to form phytoene; in the second step, dehydrogenase and isomerase form lycopene; in the third step, lycopene is cyclized to form α-carotene or β-carotene; in the fourth step, α-carotene and β-carotene are hydroxylated to form lutein and zeaxanthin, respectively; finally, under the catalysis of capsanthin/capsanthin synthase (CCS), 5,6-epoxyzeaxanthin and violaxanthin are converted into capsanthin and capsanthin, respectively. This step is a unique synthesis pathway in peppers.

AP2/ERF家族能够参与调控植物类胡萝卜素的合成。但是关于AP2/ERF家族转录因子调控辣椒果实中类胡萝卜素合成的研究较少。The AP2/ERF family can participate in regulating the synthesis of plant carotenoids. However, there are few studies on the regulation of carotenoid synthesis in pepper fruit by AP2/ERF family transcription factors.

发明内容Summary of the invention

本发明的目的在于提供CaRAP2-12基因及在调控辣椒果实中类胡萝卜素合成中的应用,所述CaRAP2-12基因为AP2/ERF家族转录因子,可为辣椒新品种的培育提供靶标基因,同时为辣椒品种遗传改良提供遗传材料和理论依据。The purpose of the present invention is to provide a CaRAP2-12 gene and its application in regulating carotenoid synthesis in pepper fruit. The CaRAP2-12 gene is an AP2/ERF family transcription factor, which can provide a target gene for the cultivation of new pepper varieties and provide genetic materials and theoretical basis for the genetic improvement of pepper varieties.

本发明提供了一种调控辣椒果实中类胡萝卜素合成的CaRAP2-12基因,所述CaRAP2-12基因的核苷酸序列如SEQ ID No.1所示。The present invention provides a CaRAP2-12 gene for regulating the synthesis of carotenoids in pepper fruits. The nucleotide sequence of the CaRAP2-12 gene is shown in SEQ ID No.1.

本发明还提供了一种扩增上述CaRAP2-12基因的引物对,包括核苷酸序列如SEQID No.3所示的上游引物和SEQ ID No.4所示的下游引物。The present invention also provides a primer pair for amplifying the CaRAP2-12 gene, comprising an upstream primer with a nucleotide sequence as shown in SEQ ID No.3 and a downstream primer as shown in SEQ ID No.4.

本发明还提供了上述CaRAP2-12基因的编码蛋白,所述编码蛋白的氨基酸序列如SEQ ID No.2所示。The present invention also provides a protein encoded by the CaRAP2-12 gene, and the amino acid sequence of the protein encoded is shown in SEQ ID No.2.

本发明还提供了上述CaRAP2-12基因或上述编码蛋白在调控类胡萝卜素合成中的应用。The present invention also provides the use of the CaRAP2-12 gene or the encoded protein in regulating the synthesis of carotenoids.

优选的,所述类胡萝卜素包含β-胡萝卜素、玉米黄质和辣椒红素。Preferably, the carotenoids include β-carotene, zeaxanthin and capsanthin.

本发明还提供了上述CaRAP2-12基因或上述编码蛋白在提高辣椒果实品质中的应用。The present invention also provides the use of the CaRAP2-12 gene or the encoded protein in improving the quality of pepper fruit.

本发明还提供了上述CaRAP2-12基因或上述编码蛋白在创制辣椒新种质中的应用。The present invention also provides the use of the CaRAP2-12 gene or the encoded protein in creating new pepper germplasm.

本发明还提供了一种调控辣椒果实中类胡萝卜素含量的方法,包括调控上述CaRAP2-12基因在辣椒果实中的表达量。The present invention also provides a method for regulating the carotenoid content in pepper fruits, comprising regulating the expression level of the CaRAP2-12 gene in the pepper fruits.

优选的,所述调控包括抑制、敲低和过表达中的任一种。Preferably, the regulation includes any one of inhibition, knockdown and overexpression.

本发明提供了一种含有上述CaRAP2-12基因的重组质粒。The invention provides a recombinant plasmid containing the CaRAP2-12 gene.

本发明提供了一种应用于调控上述CaRAP2-12基因的表达量且包含上述重组质粒的转基因工程菌。The present invention provides a transgenic engineering bacterium which is used for regulating the expression amount of the CaRAP2-12 gene and contains the recombinant plasmid.

有益效果:本发明首次克隆到调控辣椒果实类胡萝卜素合成的关键转录因子CaRAP2-12,所述CaRAP2-12基因的核苷酸序列如SEQ ID No.1所示。本发明所述CaRAP2-12基因在辣椒果实中具有促进类胡萝卜素类化合物合成,影响辣椒果实品质形成等作用。本发明通过构建含有CaRAP2-12基因的重组质粒和转基因工程菌,创制得到调控辣椒果实类胡萝卜素合成的转基因植株。本发明实施例中验证得到所述CaRAP2-12基因表达受到抑制的转基因植株类胡萝卜素合成减少,且相关基因表达量显著下调;所述CaRAP2-12基因超表达的转基因植株内类胡萝卜素合成增多,并且相关基因表达量显著上调。Beneficial effects: The present invention cloned for the first time the key transcription factor CaRAP2-12 that regulates the synthesis of carotenoids in pepper fruits, and the nucleotide sequence of the CaRAP2-12 gene is shown in SEQ ID No. 1. The CaRAP2-12 gene of the present invention has the effects of promoting the synthesis of carotenoid compounds in pepper fruits and affecting the formation of pepper fruit quality. The present invention creates transgenic plants that regulate the synthesis of carotenoids in pepper fruits by constructing recombinant plasmids and transgenic engineering bacteria containing the CaRAP2-12 gene. In the examples of the present invention, it was verified that the transgenic plants in which the expression of the CaRAP2-12 gene was inhibited had reduced carotenoid synthesis, and the expression of related genes was significantly downregulated; the transgenic plants in which the CaRAP2-12 gene was overexpressed had increased carotenoid synthesis, and the expression of related genes was significantly upregulated.

利用本发明所述CaRAP2-12基因,可丰富辣椒果实次生代谢的认知,深入了解辣椒果实品质形成特别是颜色形成的遗传机制,为实现辣椒果实选择性农艺性状育种提供了理论和实际参考基础。The use of the CaRAP2-12 gene described in the present invention can enrich the understanding of the secondary metabolism of pepper fruits, deeply understand the genetic mechanism of pepper fruit quality formation, especially color formation, and provide a theoretical and practical reference basis for achieving selective agronomic trait breeding of pepper fruits.

附图说明BRIEF DESCRIPTION OF THE DRAWINGS

图1为辣椒果实不同发育时期不同组织CaRAP2-12表达差异图;Figure 1 is a graph showing the differences in CaRAP2-12 expression in different tissues of pepper fruit at different developmental stages;

图2为RAP2-12-GFP亚细胞定位结果图;FIG2 is a diagram showing the subcellular localization results of RAP2-12-GFP;

图3为CaRAP2-12基因沉默果实总类胡萝卜素含量及类胡萝卜素合成相关基因的变化图;FIG3 is a graph showing changes in total carotenoid content and carotenoid synthesis-related genes in fruits with CaRAP2-12 gene silencing;

图4为CaRAP2-12基因过表达果实总类胡萝卜素含量及类胡萝卜素合成相关基因的变化图。Figure 4 shows the changes in total carotenoid content and carotenoid synthesis-related genes in fruits overexpressing the CaRAP2-12 gene.

具体实施方式DETAILED DESCRIPTION

本发明提供了一种调控辣椒果实中类胡萝卜素合成的CaRAP2-12基因,所述CaRAP2-12基因的核苷酸序列如SEQ ID No.1所示:ATGTGTGGTGGTTCAATAATCTCCGACTACATAGCTCCTAGCCGGACTTCTCGCCGACTTACCGCTGAGTTGCTATGGGGCCGCGCCGATCTGAGTAAAAAGCTCAAAAATCTTAGCAATTATCACTCTAAGCCCTTGCGATCTGAAGTAGTTGATGACTTCGAGGCTGATTTTCAGGACTTCAAAGAATTCTCTTATGATGAAGATGACGTTGAAGTCGATGTCAAGTCATTTACTTTCTCTGCTCCCAAAAAATCTACTGGCTCTAAATCTGTGAAAGCTGTTGATTCAGACAACGATGCTGCTGATAGATCCTCTAAGAGAAAGAGGAAGAATCAGTATAGGGGGATCAGACAGAGACCTTGGGGTAAGTGGGCAGCTGAAATACGTGACCCAAGGAAAGGGGTTCGGGTCTGGCTGGGAACCTTCAATACTGCAGAAGAAGCTGCCAGAGCTTATGATGTTGAGGCTAGGAGGATCAGAGGCAATAAAGCTAAGGTAAACTTCCCTGATGAAGCTCCAGCGCCTGCATCCAGACACTCTGTTAAGCTGAATCCTCAGAATGGCCTTCCTAAGGAGAGCCTGGACTCGGTTCCGTCTGACTCAACTATCATGAACAGTTTGGGGGATGGTTATTATGATTCTTTGGGATTCCCTGAAGAGAAACCCATGACAAAGCAGTATGCATATGGAAATGGGAGCAGTGCTTCTGCAGATACAGGTTTTGGCTCATTCACCCCTTCAGTTGGTGCTTCAGCTGGTGCTGATATCTACTTCAACTCTGATGTAGGAAGCAACTCTTTTGAGTGCTCTGATTTTGGTTGGGGAGAGCCATGCTCCAGGACTCCGGAGATATCATCAGTTCTGTCTGCTGCTGTTGAAAGTAATGAAGCTCAATTTGTTGTAGACGCCAATCCCCAGAAAAAACTGAAATCATGCACCAACAATCCTGTAGCTGATGACGGAAACACCGTGAACAGGCTATCCGAAGAGCTCTCAGCTTATGAACCCCAGATGAATTTCTTTAATCTCCCATATATGGAGGGAAATTGGGATGCATCAGTTGATGCCTTCCTCAACACAAGTGCAACTCAGAATGGTGAAAATGCTATGGACCTATGGTCGTTTGATGATGTTCCTTCTTTAATGGGGGGTGTCTTTTAA。The present invention provides a CaRAP2-12 gene for regulating the synthesis of carotenoids in pepper fruit. The nucleotide sequence of the CaRAP2-12 gene is shown in SEQ ID No.1: ATGTGTGGTGGTTCAATAATCTCCGACTACATAGCTCCTAGCCGGACTTCTCGCCGACTTACCGCTGAGTTGCTATGGGGCCGCGCCGATCTGAGTAAAAAGCTCAAAAATCTTAGCAATTATCACTCTAAGCCCTTGCGATCTGAAGTAGTTGATGACTTCGAGGCTGATTTTCAGGACTTCAAAGAATTCTCTTATGATGAAGATGACGTTGAAGTCGATGTCAAGTCATTTACTTTCTCTGCTCCCAAAAAATCTACTGGCTCTAAATCTGTGAAAGCTGTTG ATTCAGACAACGATGCTGCTGATAGATCCTCTAAGAGAAAGAGGAAGAATCAGTATAGGGGGATCAGACAGAGACCTTGGGGTAAGTGGGCAGCTGAAATACGTGACCCAAGGAAAGGGGTTCGGGTCTGGCTGGGAACCTTCAATACTGCAGAAGAAGCTGCCAGAGCTTATGATGTTGAGGCTAGGAGGATCAGAGGCAATAAAGCTAAGGTAAACTTCCCTGATGAAGCTCCAGCGCCTGCATCCAGACACTCT GTTAAGCTGAATCCTCAGAATGGCCTTCCTAAGGAG AGCCTGGACTCGGTTCCGTCTGACTCAACTATCATGAACAGTTTGGGGGATGGTTATTATGATTCTTTGGGATTCCCTGAAGAGAAACCCCATGACAAAGCAGTATGCATATGGAAATGGGAGCAGTGCTTCTGCAGATACAGGTTTTGGCTCATTCACCCCTTCAGTTGGTGCTTCAGCTGGTGCTGATATCTACTTCAACTCTGATGTAGGAAGCAACTCTTTTGAGTGCTCTGATTTTGGTTGGGGGAGAGCCAT GCTCCAGGACTCCGGAGATATCATCAGTTCTGTCTGC TGCTGTTGAAAGTAATGAAGCTCAATTTGTTGTAGACGCCAATCCCCAGAAAAAAACTGAAATCATGCACCAACAATCCTGTAGCTGATGACGGAAACACCGTGAACAGGCTATCCGAAGAGCTCTCAGCTTATGAACCCCAGATGAATTTCTTTAATCTCCCATATATGGAGGGAAATTGGGATGCATCAGTTGATGCCTTCCTCAACACAAGTGCAACTCAGAATGGTGAAAATGCTATGGACCTATGGTCGTTTGA TGATGTTCCTTCTTTAATGGGGGGTGTCTTTTAA.

本发明所述CaRAP2-12基因是调控辣椒果实类胡萝卜素合成的关键转录因子,实施例中所述CaRAP2-12基因优选由云南辣椒良种滇椒13号(登记号GPD辣椒(2022)530217)中扩增得到。The CaRAP2-12 gene described in the present invention is a key transcription factor that regulates the synthesis of carotenoids in pepper fruits. The CaRAP2-12 gene described in the embodiment is preferably amplified from the Yunnan pepper variety Dianjiao No. 13 (registration number GPD Pepper (2022) 530217).

本发明还提供了一种扩增上述CaRAP2-12基因的引物对,包括核苷酸序列如SEQID No.3所示的上游引物和SEQ ID No.4所示的下游引物。The present invention also provides a primer pair for amplifying the CaRAP2-12 gene, comprising an upstream primer with a nucleotide sequence as shown in SEQ ID No.3 and a downstream primer as shown in SEQ ID No.4.

本发明所述上游引物:5’-AGCAAGCCAAATTGCTTACAA-3’,下游引物:5'-TCTTCCACCACCACACACAC-3'。The upstream primer of the present invention is: 5'-AGCAAGCCAAATTGCTTACAA-3', and the downstream primer is: 5'-TCTTCCACCACCACACACAC-3'.

本发明还提供了上述CaRAP2-12基因的编码蛋白,所述编码蛋白的氨基酸序列如SEQ ID No.2所示:MCGGSIISDYIAPSRTSRRLTAELLWGRADLSKKLKNLSNYHSKPLRSEVVDDFEADFQDFKEFSYDEDDVEVDVKSFTFSAPKKSTGSKSVKAVDSDNDAADRSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDVEARRIRGNKAKVNFPDEAPAPASRHSVKLNPQNGLPKESLDSVPSDSTIMNSLGDGYYDSLGFPEEKPMTKQYAYGNGSSASADTGFGSFTPSVGASAGADIYFNSDVGSNSFECSDFGWGEPCSRTPEISSVLSAAVESNEAQFVVDANPQKKLKSCTNNPVADDGNTVNRLSEELSAYEPQMNFFNLPYMEGNWDASVDAFLNTSATQNGENAMDLWSFDDVPSLMGGVF。The present invention also provides a protein encoded by the CaRAP2-12 gene, wherein the amino acid sequence of the protein encoded is as shown in SEQ ID Shown in No.2: MCGGSIISDYIAPSRTSRRLTAELLWGRADLSKKLKNLSNYHSKPLRSEVVDDFEADFQDFKEFSYDEDDVEVDVKSFTFSAPKKSTGSKSVKAVDSDNDAADRSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDVEARRIRGNKAKVNFPDEAPAPASRHSVKLNPQNGLPKESLDSVPSD STIMNSLGDGYYDSLGFPEEKPMTKQYAYGNGSSADTGFGSFTPSVGASAGADIYFNSDVGSNSFECSDFGWGEPCSRTPEISSVLSAAVESNEAQFVVDANPQKKLKSCTNNPVADDGNTVNRLSEELSAYEPQMNFFNLPYMEGNWDASVDAFLNTSATQNGENAMDLWSFDDVPSLMGGVF.

本发明还提供了上述CaRAP2-12基因或上述编码蛋白在调控类胡萝卜素合成中的应用。The present invention also provides the use of the CaRAP2-12 gene or the encoded protein in regulating the synthesis of carotenoids.

本发明实施例中通过VIGS沉默辣椒果实中CaRAP2-12基因,沉默样本中总胡萝卜素的含量显著降低,其中辣椒果实中CaCRTZ1基因表达量显著上调,其它类胡萝卜素生物合成结构基因均显著下调;过表达辣椒果实中CaRAP2-12基因,类胡萝卜素生物合成结构基因CaPSY2、CaPSY3、CaPDS、CaZDS、CaCrtISO1、CaCrtISO2、CaLYCB1、CaLYCB2、CaCRTZ1和CaCRTZ2表达量均有不同程度的上调,且差异显著,CaVDE和CaZEP表达量则显著下降,而CaPSY1没有显著性差异,证明CaRAP2-12蛋白及其编码基因与辣椒果实类胡萝卜素化合物合成代谢调控相关,能显著提高辣椒果实品质形成,CaRAP2-12基因能够应用于调控辣椒果实中类胡萝卜素合成和辣椒果实品质的形成。本发明所述类胡萝卜素优选包含β-胡萝卜素、玉米黄质和辣椒红素。In the embodiment of the present invention, the CaRAP2-12 gene in pepper fruit is silenced by VIGS, and the total carotene content in the silenced sample is significantly reduced, among which the expression level of the CaCRTZ1 gene in pepper fruit is significantly upregulated, and other carotenoid biosynthesis structural genes are significantly downregulated; the CaRAP2-12 gene in pepper fruit is overexpressed, and the expression levels of the carotenoid biosynthesis structural genes CaPSY2, CaPSY3, CaPDS, CaZDS, CaCrtISO1, CaCrtISO2, CaLYCB1, CaLYCB2, CaCRTZ1 and CaCRTZ2 are all upregulated to varying degrees, and the differences are significant, while the expression levels of CaVDE and CaZEP are significantly decreased, while there is no significant difference in CaPSY1, which proves that the CaRAP2-12 protein and its encoding gene are related to the regulation of the synthesis and metabolism of carotenoid compounds in pepper fruit, can significantly improve the quality formation of pepper fruit, and the CaRAP2-12 gene can be used to regulate the synthesis of carotenoids in pepper fruit and the formation of pepper fruit quality. The carotenoids of the present invention preferably include β-carotene, zeaxanthin and capsanthin.

本发明还提供了上述CaRAP2-12基因或上述编码蛋白在提高辣椒果实品质中的应用。The present invention also provides the use of the CaRAP2-12 gene or the encoded protein in improving the quality of pepper fruit.

本发明所述CaRAP2-12基因的表达模式与辣椒果实中类胡萝卜素合成高度相关,将该基因瞬时过量表达在辣椒果实中,能够促进植物的类胡萝卜素合成积累,类胡萝卜素合成相关基因表达也显著升高;通过VIGS抑制CaRAP2-12的表达,使辣椒果实中类胡萝卜素相关化合物含量显著下降,类胡萝卜素合成相关基因表达也显著下降。本发明所述基因的克隆将不仅有利于解析辣椒果实类胡萝卜素的调控机制,而且有助于培育类胡萝卜素含量较高的辣椒品种,提高辣椒果实品质,具有很大的应用价值。The expression pattern of the CaRAP2-12 gene of the present invention is highly correlated with the synthesis of carotenoids in pepper fruits. Transient overexpression of the gene in pepper fruits can promote the accumulation of carotenoid synthesis in plants, and the expression of carotenoid synthesis-related genes is also significantly increased; inhibiting the expression of CaRAP2-12 by VIGS significantly reduces the content of carotenoid-related compounds in pepper fruits, and the expression of carotenoid synthesis-related genes is also significantly reduced. The cloning of the gene of the present invention will not only help to analyze the regulatory mechanism of pepper fruit carotenoids, but also help to cultivate pepper varieties with higher carotenoid content and improve the quality of pepper fruits, and has great application value.

本发明还提供了上述CaRAP2-12基因或上述编码蛋白在创制辣椒新种质中的应用。The present invention also provides the use of the CaRAP2-12 gene or the encoded protein in creating new pepper germplasm.

本发明还提供了一种调控辣椒果实中类胡萝卜素含量的方法,包括调控上述CaRAP2-12基因在辣椒果实中的表达量。The present invention also provides a method for regulating the carotenoid content in pepper fruits, comprising regulating the expression level of the CaRAP2-12 gene in the pepper fruits.

本发明所述调控优选包括抑制、敲低和过表达中的任一种,本发明对所述调控的方法并没有特殊限定,利用本领域的常规基因工程方法进行即可。The regulation of the present invention preferably includes any one of inhibition, knockdown and overexpression. The present invention does not specifically limit the method of the regulation, and it can be carried out using conventional genetic engineering methods in the art.

本发明提供了一种含有上述CaRAP2-12基因的重组质粒。The invention provides a recombinant plasmid containing the CaRAP2-12 gene.

本发明所述重组质粒优选包括将所述CaRAP2-12基因的插入片段连接到pCambia1301载体NcoI位点上,构建过表达载体。The recombinant plasmid of the present invention preferably comprises connecting the insert fragment of the CaRAP2-12 gene to the NcoI site of the pCambia1301 vector to construct an overexpression vector.

本发明提供了一种应用于调控上述CaRAP2-12基因表达量且包含上述重组质粒的转基因工程菌。The present invention provides a transgenic engineering bacterium used for regulating the expression amount of the CaRAP2-12 gene and comprising the recombinant plasmid.

为了进一步说明本发明,下面结合实施例对本发明提供的CaRAP2-12基因及在调控辣椒果实中类胡萝卜素合成中的应用进行详细地描述,但不能将它们理解为对本发明保护范围的限定。To further illustrate the present invention, the CaRAP2-12 gene provided by the present invention and its application in regulating carotenoid synthesis in pepper fruit are described in detail below in conjunction with the examples, but they should not be construed as limiting the scope of protection of the present invention.

实施例1Example 1

1、CaRAP2-12基因的克隆与序列结构分析1. Cloning and sequence analysis of CaRAP2-12 gene

云南辣椒良种滇椒13号种植于云南省昆明市盘龙区云南农业大学滇台中心种植大棚,取成熟果实用于RNA的提取。总RNA的抽提采用快速通用植物RNA提取试剂盒(北京华越洋)按照说明操作,用分光度计检测其RNA含量和质量。Yunnan pepper variety Dianjiao No. 13 was planted in the Yunnan-Taiwan Center of Yunnan Agricultural University in Panlong District, Kunming, Yunnan Province, and the mature fruits were used for RNA extraction. The total RNA was extracted using a rapid universal plant RNA extraction kit (Beijing Huayueyang) according to the instructions, and the RNA content and quality were detected by a spectrophotometer.

利用Ⅲ1stStrandcDNASynthesisSuperMix反转录试剂盒合成第一链cDNA。经过优化后,取适量的反转录产物用于随后的PCR。以cDNA第一链作为RT-PCR模板,常规方法做PCR,扩增CaRAP2-12基因。其中上游引物和下游引物分别为SEQ ID No.3和SEQ IDNo.4。use Ⅲ1stStrandcDNASynthesisSuperMix reverse transcription kit was used to synthesize the first strand cDNA. After optimization, an appropriate amount of reverse transcription product was used for subsequent PCR. The first strand of cDNA was used as a template for RT-PCR and PCR was performed by conventional methods to amplify the CaRAP2-12 gene. The upstream primer and the downstream primer were SEQ ID No.3 and SEQ ID No.4, respectively.

25μLPCR反应体系为:MegaFiTMFidelity2XPCRMasterMix12.5μL,上下游引物各1μL,模版1μL,ddH2O9.5μL。反应程序:98℃2min;98℃10sec,57℃30sec,72℃57sec,35个循环。The 25 μL PCR reaction system was: MegaFi TM Fidelity 2X PCR Master Mix 12.5 μL, upstream and downstream primers 1 μL each, template 1 μL, ddH 2 O 9.5 μL. Reaction program: 98°C 2 min; 98°C 10 sec, 57°C 30 sec, 72°C 57 sec, 35 cycles.

PCR产物CaRAP2-12基因经纯化回收后,连接到pClone007 Versatile SimpleVector载体(擎科生物,中国)上得到重组质粒,转化大肠杆菌感受态细胞DH5a,送上海生工公司测序,得到的CaRAP2-12基因的核苷酸序列如SEQ ID No.1所示,编码的蛋白的氨基酸序列如SEQ ID No.2所示。The PCR product CaRAP2-12 gene was purified and recovered, and then connected to the pClone007 Versatile SimpleVector vector (Qingke Biotechnology, China) to obtain a recombinant plasmid, which was transformed into Escherichia coli competent cells DH5a and sent to Shanghai Biotechnology Company for sequencing. The nucleotide sequence of the obtained CaRAP2-12 gene is shown in SEQ ID No.1, and the amino acid sequence of the encoded protein is shown in SEQ ID No.2.

2、辣椒果实不同部位不同发育时期CaRAP2-12基因在辣椒果实不同组织中表达分析2. Expression analysis of CaRAP2-12 gene in different tissues of pepper fruit at different developmental stages in different parts of pepper fruit

云南辣椒良种滇椒13号种植于云南省昆明市盘龙区云南农业大学滇台中心种植大棚,在辣椒果实发育的6个不同时期3个不同组织用于总RNA的提取,以花作为对照,使用qRT-PCR测定不同发育时期不同部位(种子、胎座和果皮)的CaRAP2-12基因的相对表达水平。The improved variety of Yunnan pepper Dianjiao No. 13 was planted in the planting greenhouse of Yunnan Agricultural University Diantai Center in Panlong District, Kunming City, Yunnan Province. Three different tissues at six different stages of pepper fruit development were used for total RNA extraction. Flowers were used as controls, and qRT-PCR was used to determine the relative expression levels of the CaRAP2-12 gene in different parts (seeds, placenta and pericarp) at different developmental stages.

qRT-PCR所用引物:Primers used for qRT-PCR:

CaRAP2-12-F(SEQ ID No.37):AGCAAGCCAAATTGCTTACAA;CaRAP2-12-F (SEQ ID No. 37): AGCAAGCCAAATTGCTTACAA;

CaRAP2-12-R(SEQ ID No.38):TCTTCCACCACCACACACAC;CaRAP2-12-R (SEQ ID No. 38): TCTTCCACCACCACACACAC;

Ubi-3-F(SEQ ID No.39):TTGGCAAGCAACAATCAT;Ubi-3-F (SEQ ID No. 39): TTGGCAAGCAACAATCAT;

Ubi-3-F(SEQ ID No.40):GCAGATGGACAGCAGGAC。Ubi-3-F (SEQ ID No. 40): GCAGATGCAGCAGGAC.

辣椒果实不同发育时期不同组织中CaRAP2-12基因的表达差异结果如图1所示,CaRAP2-12在辣椒果实的种子、胎座和果皮中均有表达,但表达量存在明显差异。CaRAP2-12在种子不同发育阶段中表达量呈先上升后下降的趋势,40DPA时最低,10DPA时最高,但在50DPA时有一个异常升高;CaRAP2-12在胎座不同发育阶段表达量呈先上升后下降再上升的趋势,20DPA表达量最高,50DPA最低;CaRAP2-12在果皮不同发育阶段表达量呈先下降后上升的趋势,60DPA表达量最高,20DPA最低。10DPA到20DPA时期CaRAP2-12在S01胎座中表达量较高,在果皮中较低;30DPA到60DPA时期CaRAP2-12在果皮中表达量较高。The results of the differential expression of the CaRAP2-12 gene in different tissues at different developmental stages of pepper fruit are shown in Figure 1. CaRAP2-12 is expressed in the seeds, placenta and pericarp of pepper fruit, but the expression levels are significantly different. The expression level of CaRAP2-12 in different developmental stages of seeds first increases and then decreases, with the lowest level at 40DPA and the highest level at 10DPA, but there is an abnormal increase at 50DPA; the expression level of CaRAP2-12 in different developmental stages of the placenta first increases, then decreases, and then increases, with the highest level at 20DPA and the lowest level at 50DPA; the expression level of CaRAP2-12 in different developmental stages of the pericarp first decreases and then increases, with the highest level at 60DPA and the lowest level at 20DPA. The expression level of CaRAP2-12 in the S01 placenta from 10DPA to 20DPA is higher, and that in the pericarp is lower; the expression level of CaRAP2-12 in the pericarp is higher from 30DPA to 60DPA.

3、CaRAP2-12基因亚细胞定位3. Subcellular localization of CaRAP2-12 gene

利用XbaI和BamHI限制性内切酶将1300-35S-GFP植物瞬时荧光表达载体进行线性化,并设计带有1300-35S-GFP载体同源臂的CaRAP2-12ORF克隆引物Forward primer和Reverse primer扩增CaRAP2-12基因CDS区作为插入片段。利用使用In-FusionTM HDCloningkit重组试剂盒按照说明将插入片段和线性化载体重组为pCaRAP2-12-GFP重组载体。The 1300-35S-GFP plant transient fluorescence expression vector was linearized using XbaI and BamHI restriction endonucleases, and the CaRAP2-12 ORF cloning primers Forward primer and Reverse primer with 1300-35S-GFP vector homology arms were designed to amplify the CaRAP2-12 gene CDS region as an insert fragment. The insert fragment and the linearized vector were recombined into the pCaRAP2-12-GFP recombinant vector using the In-FusionTM HD Cloning kit recombination kit according to the instructions.

Forwardprimer(SEQ ID No.41):CTTGCTCACCATGTCGACTCTAGATAAATATCCTCCTCCTAGAGCTGG;Forwardprimer (SEQ ID No. 41): CTTGCTCACCATGTCGACTCTAGATAAATATCCTCCTCCTAGAGCTGG;

Reverseprimer(SEQ ID No.42):GGAGAGAACACGGGGGACGAGCTCATGGTGGGCCAATTACTGTACGGT。Reverseprimer (SEQ ID No. 42): GGAGAGAACACGGGGGACGAGCTCATGGTGGGCCAATTACTGTACGT.

将pCaRAP2-12-GFP重组载体和空载体1300-35S-GFP转化大肠杆菌,涂抗性平板后,挑选阳性菌37℃过夜培养并提取质粒。将pCaRAP2-12-GFP和空载体1300-35S-GFP分别与细胞核marker共转化拟南芥原生质体,弱光下培养8-10h,在激光共聚焦显微镜下观察CaRAP2-12的亚细胞定位。The pCaRAP2-12-GFP recombinant vector and the empty vector 1300-35S-GFP were transformed into Escherichia coli, and after coating the resistant plate, the positive bacteria were selected and cultured at 37°C overnight and the plasmids were extracted. The pCaRAP2-12-GFP and the empty vector 1300-35S-GFP were co-transformed with the nuclear marker into Arabidopsis protoplasts, cultured under weak light for 8-10 hours, and the subcellular localization of CaRAP2-12 was observed under a laser confocal microscope.

CaRAP2-12基因在拟南芥原生质体中的亚细胞定位结果如图2所示,CaRAP2-12在拟南芥原生质体中具有明显的转录因子核定位信号,这说明CaRAP2-12可能在细胞核中调控相关基因的转录表达。The subcellular localization results of the CaRAP2-12 gene in Arabidopsis protoplasts are shown in Figure 2. CaRAP2-12 has obvious transcription factor nuclear localization signals in Arabidopsis protoplasts, which indicates that CaRAP2-12 may regulate the transcriptional expression of related genes in the cell nucleus.

4、CaRAP2-12基因在辣椒果实中功能验证4. Functional verification of CaRAP2-12 gene in pepper fruit

(1)VIGS沉默辣椒果实中CaRAP2-12基因(1) VIGS silencing of CaRAP2-12 genes in pepper fruit

基于SGNVIGSTool在线基因沉默工具(https://vigs.solgenomics.net/),选择辣椒基因组数据库筛选沉默片段,以辣椒CaRAP2-12纯化扩增产物为模板,使用引物CaRAP2-12-VIGS(上游引物,SEQ ID No.5:5’-TAAGGTTACCGAATTCCCTGAAGAGAAACCCATGAC-3’,下游引物,SEQ ID No.6:5'-GCTCGGTACCGGATCACAGGATTGTTGGTGCATG-3')克隆插入片段,程序及体系同前(退火温度为65℃,延伸时间为10sec)。使用In-FusionTM HDCloningkit重组试剂盒将纯化的CaRAP2-12基因沉默片段与重组入pTRV2质粒,并将重组质粒转化DH5α大肠杆菌,最后筛选阳性菌落后提取质粒转入GV3101农杆菌。Based on the SGNVIGSTool online gene silencing tool (https://vigs.solgenomics.net/), the pepper genome database was selected to screen the silenced fragments, and the purified amplified product of pepper CaRAP2-12 was used as a template. The primers CaRAP2-12-VIGS (upstream primer, SEQ ID No.5: 5'-TAAGGTTACCGAATTCCCTGAAGAGAAACCCATGAC-3', downstream primer, SEQ ID No.6: 5'-GCTCGGTACCGGATCACAGGATTGTTGGTGCATG-3') were used to clone the insert fragment. The procedure and system were the same as before (annealing temperature was 65°C, and extension time was 10 sec). The purified CaRAP2-12 gene silencing fragment was recombined into the pTRV2 plasmid using the In-Fusion TM HDCloningkit recombination kit, and the recombinant plasmid was transformed into DH5α Escherichia coli. Finally, the positive colonies were screened and the plasmid was extracted and transferred into GV3101 Agrobacterium.

配制含有10mMMES、10mMMgCl2和150μMAS的溶液,调节pH为5.6,除菌后用作侵染液。使用4000rpm的转速离心10min收集农杆菌,倒掉上清,用配制好的侵染液进行重悬浮,以侵染液为对照,最终调节各个菌株悬浮液OD600为0.8A,将重悬液在28℃摇床避光静置2~3h。以1:1的比例配制GV3101pTRV1与pTRV2::CaRAP2-12,pTRV2::00接种液,用1ml无菌无针注射器将0.5ml接种液注射到辣椒果实的果肉中。接种后的辣椒果实在相对湿度60%的暗环境下18℃培养48h,然后置于18℃光周期16h/暗周期8h的培养箱中培养。辣椒果实培养15d后,对沉默果实进行取样,并利用qRT-PCR验证沉默成功的果实样本。Prepare a solution containing 10mM MES, 10mM MgCl 2 and 150μM AS, adjust the pH to 5.6, and use it as an infection solution after sterilization. Collect Agrobacterium by centrifugation at 4000rpm for 10min, pour off the supernatant, resuspend with the prepared infection solution, use the infection solution as a control, and finally adjust the OD 600 of each strain suspension to 0.8A, and let the resuspension stand in a 28℃ shaker in the dark for 2-3h. Prepare GV3101pTRV1 and pTRV2::CaRAP2-12, pTRV2::00 inoculation solution in a 1:1 ratio, and inject 0.5ml of the inoculation solution into the flesh of pepper fruit with a 1ml sterile needleless syringe. The inoculated pepper fruit is cultured at 18℃ for 48h in a dark environment with a relative humidity of 60%, and then placed in an incubator at 18℃ with a light cycle of 16h/dark cycle of 8h. After pepper fruits were cultured for 15 days, samples of silenced fruits were taken, and qRT-PCR was used to verify the fruit samples with successful silencing.

表1qRT-PCR引物表Table 1 qRT-PCR primer list

结果显示(图3)在接种后,与对照相比,注射含有pTRV2::CaRAP2-12质粒农杆菌的辣椒果实在注射孔附近显示明显的绿色。使用qRT-PCR对CaRAP2-12沉默果实进行筛选,CaRAP2-12基因下调(图3中b)。对沉默阳性果实组织中类胡萝卜素含量测定(图3中d),结果显示相对于pTRV2::00来说,沉默样本中总胡萝卜素的含量显著降低。当CaRAP2-12基因被沉默后,相对于pTRV2::00来说,辣椒果实中CaCRTZ1基因表达量显著上调(P<0.05),其它类胡萝卜素生物合成结构基因均显著下调(P<0.05)(图3中c)。The results showed (Figure 3) that after inoculation, pepper fruits injected with Agrobacterium containing the pTRV2::CaRAP2-12 plasmid showed obvious green color near the injection hole compared with the control. CaRAP2-12 silenced fruits were screened using qRT-PCR, and the CaRAP2-12 gene was downregulated (Figure 3b). The carotenoid content in the silenced positive fruit tissue was determined (Figure 3d), and the results showed that the total carotene content in the silenced sample was significantly reduced compared with pTRV2::00. When the CaRAP2-12 gene was silenced, the expression of the CaCRTZ1 gene in pepper fruits was significantly upregulated (P<0.05) compared with pTRV2::00, and other carotenoid biosynthesis structural genes were significantly downregulated (P<0.05) (Figure 3c).

(2)过表达辣椒果实中CaRAP2-12基因(2) Overexpression of the CaRAP2-12 gene in pepper fruit

基于In-FusionCloningPrimerDesignTool在线基因引物设计工具为CaRAP2-12基因ORF两端设计带15bppCambia1301质粒同源臂的无缝克隆引物(上游引物SEQ ID No.35:5’-GGACTCTTGACCATGCCCCTTTGCTGAAGAAAAAACTTT-3’,下游引物SEQ ID No.36:5'-CTCAGATCTACCATGAGGAAGGCATGCCGACTTAAAAGA-3'),以CaRAP2-12基因序列为模版克隆并纯化,即得插入片段。Based on the In-Fusion Cloning Primer Design Tool online gene primer design tool, seamless cloning primers with 15bppCambia1301 plasmid homology arms were designed for both ends of the CaRAP2-12 gene ORF (upstream primer SEQ ID No. 35: 5'-GGACTCTTGACCATGCCCCTTTGCTGAAGAAAAAACTTT-3', downstream primer SEQ ID No. 36: 5'-CTCAGATCTACCATGAGGAAGGCATGCCGACTTAAAAGA-3'), and the CaRAP2-12 gene sequence was used as a template for cloning and purification to obtain the inserted fragment.

使用同源重组试剂盒将CaRAP2-12基因插入片段连接到pCambia1301载体NcoI位点上,构建过表达载体。使用In-FusionTMHDCloningkit重组试剂盒将纯化的CaRAP2-12基因过表达片段与重组入pCambia1301质粒,并将重组质粒转化DH5α大肠杆菌,最后筛选阳性菌落后提取质粒转入GV3101农杆菌。同沉默方法配制侵染液,获得接种液后注射辣椒果实。10d后,对果实进行取样,并利用qRT-PCR验证过表达成功的阳性样本。The CaRAP2-12 gene insert was connected to the NcoI site of the pCambia1301 vector using a homologous recombination kit to construct an overexpression vector. The purified CaRAP2-12 gene overexpression fragment was recombined into the pCambia1301 plasmid using the In-Fusion TM HDCloningkit recombination kit, and the recombinant plasmid was transformed into DH5α Escherichia coli. Finally, the positive colonies were screened and the plasmid was extracted and transferred into GV3101 Agrobacterium. The infection solution was prepared in the same way as the silencing method, and the inoculum was injected into pepper fruits after obtaining it. After 10 days, the fruits were sampled, and the positive samples with successful overexpression were verified by qRT-PCR.

在辣椒离体果实中过表达CaRAP2-12基因,在接种10天后取注射孔附近组织进行GUS染色,结果显示(图4中a)与对照果实相比,注射含有pCambia1301::00和pCambia1301::CaRAP2-12质粒农杆菌的辣椒果实组织在染色后显示明显的蓝色,且pCambia1301::CaRAP2-12果实组织比pCambia1301::00稍浅。使用qRT-PCR对CaRAP2-12过表达果实组织进行筛选,发现过表达果实组织中CaRAP2-12基因表达量显著高于pCambia1301::00果实组织,表明CaRAP2-12基因过表达成功(图4中b)。The CaRAP2-12 gene was overexpressed in the detached pepper fruit, and the tissue near the injection hole was taken for GUS staining 10 days after inoculation. The results showed (Figure 4a) that compared with the control fruit, the pepper fruit tissue injected with Agrobacterium containing pCambia1301::00 and pCambia1301::CaRAP2-12 plasmids showed obvious blue after staining, and the pCambia1301::CaRAP2-12 fruit tissue was slightly lighter than pCambia1301::00. qRT-PCR was used to screen the CaRAP2-12 overexpression fruit tissue, and it was found that the expression level of the CaRAP2-12 gene in the overexpression fruit tissue was significantly higher than that in the pCambia1301::00 fruit tissue, indicating that the CaRAP2-12 gene was successfully overexpressed (Figure 4b).

在瞬时过表达样本中,辣椒果实总类胡萝卜素含量虽然有所升高,但没有显著差异(P>0.05)(图4中d)。与对照相比,类胡萝卜素生物合成结构基因CaPSY2、CaPSY3、CaPDS、CaZDS、CaCrtISO1、CaCrtISO2、CaLYCB1、CaLYCB2、CaCRTZ1和CaCRTZ2表达量均有不同程度的上调,且差异显著(P<0.05),CaVDE和CaZEP表达量则显著下降(P<0.05),而CaPSY1没有显著性差异。In the transient overexpression samples, the total carotenoid content of pepper fruit increased, but there was no significant difference (P>0.05) (Figure 4d). Compared with the control, the expression levels of carotenoid biosynthesis structural genes CaPSY2, CaPSY3, CaPDS, CaZDS, CaCrtISO1, CaCrtISO2, CaLYCB1, CaLYCB2, CaCRTZ1 and CaCRTZ2 were upregulated to varying degrees, and the differences were significant (P<0.05), while the expression levels of CaVDE and CaZEP were significantly decreased (P<0.05), while there was no significant difference in CaPSY1.

综上所述,CaRAP2-12蛋白及其编码基因与辣椒果实类胡萝卜素化合物合成代谢调控相关,能显著提高辣椒果实品质形成,CaRAP2-12基因能够应用于调控辣椒果实中类胡萝卜素合成和辣椒果实品质的形成。In summary, the CaRAP2-12 protein and its encoding gene are related to the regulation of the synthesis and metabolism of carotenoid compounds in pepper fruit, and can significantly improve the quality formation of pepper fruit. The CaRAP2-12 gene can be used to regulate the synthesis of carotenoids in pepper fruit and the formation of pepper fruit quality.

尽管上述实施例对本发明做出了详尽的描述,但它仅仅是本发明一部分实施例,而不是全部实施例,人们还可以根据本实施例在不经创造性前提下获得其他实施例,这些实施例都属于本发明保护范围。Although the above embodiment describes the present invention in detail, it is only a part of the embodiments of the present invention, not all of the embodiments. People can also obtain other embodiments based on this embodiment without creativity, and these embodiments all fall within the protection scope of the present invention.

Claims (3)

1. The application of over-expression CaRAP-12 genes or encoded proteins in improving the synthesis of pepper carotenoids is characterized in that the nucleotide sequence of CaRAP-12 genes is shown as SEQ ID No. 1; the amino acid sequence of the coding protein of CaRAP-12 genes is shown as SEQ ID No. 2.
2. The use according to claim 1, wherein the carotenoids comprise β -carotene, zeaxanthin and capsanthin.
3. A method for improving carotenoid content in pepper fruits is characterized by comprising the step of over-expressing CaRAP-12 genes in pepper fruits, wherein the nucleotide sequence of the CaRAP-12 genes is shown as SEQ ID No. 1.
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