(Q64947122)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function (English)

1 reference

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27 March 2020

1 reference

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27 March 2020

1 reference

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27 March 2020

1 reference

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27 March 2020

1 reference

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27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Christopher K Glass

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Verena M Link

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Hyun B Chun

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Emma Westin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Yohei Abe

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Casey E Romanoski

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Jenhan Tao

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Gregory J Fonseca

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Nathanael J Spann

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Tobias Strid

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Miao Yu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Rong Hu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Dirk Metzler

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Bing Ren

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

language of work or name

English

0 references

publication date

17 May 2018

1 reference

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27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

volume

173

1 reference

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27 March 2020

issue

1 reference

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27 March 2020

page(s)

1796-1809.e17

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describes a project that uses

27 March 2020

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

cites work

Identification of common molecular subsequences

1 reference

12 December 2020

DNA-methylation analysis by the bisulfite-assisted genomic sequencing method

1 reference

12 December 2020

The human genome browser at UCSC

1 reference

12 December 2020

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

12 December 2020

Kdo2-Lipid A of Escherichia coli, a defined endotoxin that activates macrophages via TLR-4.

1 reference

12 December 2020

STAMP: a web tool for exploring DNA-binding motif similarities

1 reference

12 December 2020

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

1 reference

12 December 2020

Model-based analysis of ChIP-Seq (MACS)

1 reference

12 December 2020

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

1 reference

12 December 2020

WGCNA: an R package for weighted correlation network analysis

1 reference

12 December 2020

Biopython: freely available Python tools for computational molecular biology and bioinformatics

1 reference

12 December 2020

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

12 December 2020

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

12 December 2020

Nucleosome dynamics define transcriptional enhancers

1 reference

12 December 2020

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

1 reference

12 December 2020

Transcriptional Enhancers in Animal Development and Evolution

1 reference

12 December 2020

Histone H3K27ac separates active from poised enhancers and predicts developmental state

1 reference

12 December 2020

PU.1 and C/EBP(alpha) synergistically program distinct response to NF-kappaB activation through establishing monocyte specific enhancers

1 reference

12 December 2020

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

1 reference

12 December 2020

A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells

1 reference

12 December 2020

Mouse genomic variation and its effect on phenotypes and gene regulation

1 reference

12 December 2020

Fast gapped-read alignment with Bowtie 2

1 reference

12 December 2020

Topological domains in mammalian genomes identified by analysis of chromatin interactions

1 reference

12 December 2020

STAR: ultrafast universal RNA-seq aligner

1 reference

12 December 2020

Using the Wash U Epigenome Browser to examine genome-wide sequencing data

1 reference

12 December 2020

Macrophage biology in development, homeostasis and disease

1 reference

12 December 2020

Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.

1 reference

12 December 2020

Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

1 reference

12 December 2020

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

1 reference

12 December 2020

Effect of natural genetic variation on enhancer selection and function.

1 reference

12 December 2020

Transcriptional enhancers: from properties to genome-wide predictions

1 reference

12 December 2020

An atlas of active enhancers across human cell types and tissues

1 reference

12 December 2020

Conservation of trans-acting circuitry during mammalian regulatory evolution

1 reference

12 December 2020

Principles of regulatory information conservation between mouse and human

1 reference

12 December 2020

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

1 reference

12 December 2020

Environment drives selection and function of enhancers controlling tissue-specific macrophage identities

1 reference

12 December 2020

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

1 reference

12 December 2020

Pioneer transcription factors in cell reprogramming

1 reference

12 December 2020

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

12 December 2020

Human promoters are intrinsically directional

1 reference

12 December 2020

The selection and function of cell type-specific enhancers

1 reference

12 December 2020

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

1 reference

12 December 2020

Integrative analysis of 111 reference human epigenomes

1 reference

12 December 2020

Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming

1 reference

12 December 2020

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

1 reference

12 December 2020

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

1 reference

12 December 2020

A global reference for human genetic variation

1 reference

12 December 2020

Meta- and Orthogonal Integration of Influenza "OMICs" Data Defines a Role for UBR4 in Virus Budding.

1 reference

12 December 2020

The Hybrid Mouse Diversity Panel: a resource for systems genetics analyses of metabolic and cardiovascular traits

1 reference

12 December 2020

Tissue damage drives co-localization of NF-κB, Smad3, and Nrf2 to direct Rev-erb sensitive wound repair in mouse macrophages

1 reference

12 December 2020

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

1 reference

12 December 2020

Nascent RNA sequencing reveals distinct features in plant transcription

1 reference

12 December 2020

Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq

1 reference

12 December 2020

SREBP1 Contributes to Resolution of Pro-inflammatory TLR4 Signaling by Reprogramming Fatty Acid Metabolism

1 reference

12 December 2020

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors

1 reference

12 December 2020

Genetic effects on gene expression across human tissues

1 reference

12 December 2020

Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice

1 reference

12 December 2020

10.1016/J.CELL.2018.04.018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

PubMed publication ID

29779944

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29779944%20AND%20SRC:MED&resulttype=core&format=json