(Q47834301)

6 February 2018

title

Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping (English)

1 reference

6 February 2018

author name string

Wei Zhu

series ordinal

1 reference

6 February 2018

Shannon D Schlueter

series ordinal

1 reference

6 February 2018

Volker Brendel

series ordinal

1 reference

6 February 2018

language of work or name

English

0 references

publication date

1 June 2003

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6 February 2018

number of pages

1 reference

inferred from page(s)

published in

Plant Physiology

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6 February 2018

volume

132

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6 February 2018

issue

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6 February 2018

page(s)

469-484

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6 February 2018

Efficient clustering of large EST data sets on parallel computers

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1 reference

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Full-length messenger RNA sequences greatly improve genome annotation

2 November 2018

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Functional annotation of a full-length Arabidopsis cDNA collection

2 November 2018

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Comparison of RNA expression profiles based on maize expressed sequence tag frequency analysis and micro-array hybridization

2 November 2018

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Computational modeling of gene structure in Arabidopsis thaliana

2 November 2018

1 reference

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A genomic view of alternative splicing

2 November 2018

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2 November 2018

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2 November 2018

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Alternative splicing and genome complexity

2 November 2018

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2 November 2018

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A computational scan for U12-dependent introns in the human genome sequence

2 November 2018

1 reference

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Identifying the 3'-terminal exon in human DNA.

2 November 2018

1 reference

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Gene structure prediction and alternative splicing analysis using genomically aligned ESTs

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Computational inference of homologous gene structures in the human genome

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

SpliceDB: database of canonical and non-canonical mammalian splice sites

2 November 2018

1 reference

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The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species

2 November 2018

1 reference

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Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

CART classification of human 5' UTR sequences

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Analysis of canonical and non-canonical splice sites in mammalian genomes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

AT-AC pre-mRNA splicing mechanisms and conservation of minor introns in voltage-gated ion channel genes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Evolutionary fates and origins of U12-type introns.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Prediction of locally optimal splice sites in plant pre-mRNA with applications to gene identification in Arabidopsis thaliana genomic DNA.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

A computer program for aligning a cDNA sequence with a genomic DNA sequence

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Terminal intron dinucleotide sequences do not distinguish between U2- and U12-dependent introns

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Combining evidence using p-values: application to sequence homology searches

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Classification of introns: U2-type or U12-type

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

A tool for analyzing and annotating genomic sequences

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Non-canonical introns are at least 10(9) years old.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

U1-mediated exon definition interactions between AT-AC and GT-AG introns

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Gene recognition via spliced sequence alignment.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Exon recognition in vertebrate splicing

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166990

Comparison of gene indexing databases

2 November 2018

1 reference

12 December 2020

Optimal spliced alignment of homologous cDNA to a genomic DNA template

1 reference

12 December 2020

Computational identification of promoters and first exons in the human genome

1 reference

12 December 2020

Arabidopsis consensus intron sequences

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.102.018101

1 reference

6 February 2018

PMC publication ID

166990

0 references

1 reference

6 February 2018