(Q46098126)

19 December 2017

http://europepmc.org/abstract/MED/24963058

title

Comparative Analysis of Miscanthus and Saccharum Reveals a Shared Whole-Genome Duplication but Different Evolutionary Fates (English)

1 reference

19 December 2017

http://europepmc.org/abstract/MED/24963058

main subject

whole genome duplication

1 reference

inferred from title

whole genome sequencing

1 reference

Xiyin Wang

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Tae-Ho Lee

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Katrin Jakob

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Geung-Joo Lee

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

publication date

24 June 2014

1 reference

19 December 2017

http://europepmc.org/abstract/MED/24963058

published in

The Plant Cell

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

2420-2429

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24963058%20AND%20SRC:MED&resulttype=core&format=json

Chromosome assortment in Saccharum

10 June 2020

cites work

1 reference

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A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy

26 August 2018

1 reference

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High resolution genetic mapping by genome sequencing reveals genome duplication and tetraploid genetic structure of the diploid Miscanthus sinensis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Recently formed polyploid plants diversify at lower rates

26 August 2018

1 reference

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26 August 2018

1 reference

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Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages

26 August 2018

1 reference

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Insights from the comparison of plant genome sequences

26 August 2018

1 reference

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26 August 2018

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26 August 2018

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26 August 2018

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Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization

26 August 2018

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26 August 2018

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The Sorghum bicolor genome and the diversification of grasses

26 August 2018

1 reference

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RFLP linkage map and genome analysis of Saccharum spontaneum.

26 August 2018

1 reference

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Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

26 August 2018

1 reference

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Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome

26 August 2018

1 reference

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PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

26 August 2018

1 reference

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Genome duplication and the origin of angiosperms

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Polyploidy, evolutionary opportunity, and crop adaptation

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

26 August 2018

GeneWise and Genomewise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

A comparative phylogenetic approach for dating whole genome duplication events

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Sugarcane genomics: depicting the complex genome of an important tropical crop

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

The evolutionary fate and consequences of duplicate genes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

DNA sequence evidence for the segmental allotetraploid origin of maize

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids.

26 August 2018

1 reference

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Widespread aneuploidy revealed by DNA microarray expression profiling.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Detailed alignment of saccharum and sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

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26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

RFLP mapping in cultivated sugarcane (Saccharum spp.): genome organization in a highly polyploid and aneuploid interspecific hybrid

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

A genetic linkage map of Saccharum spontaneum L. 'SES 208'

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Photosynthesis by sugar-cane leaves. A new carboxylation reaction and the pathway of sugar formation

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

Synteny and Collinearity in Plant Genomes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114942

SSR-based genetic maps of Miscanthus sinensis and M. sacchariflorus, and their comparison to sorghum

29 September 2018

1 reference

12 December 2020

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

1 reference

12 December 2020

Quantitative chromosome map of the polyploid Saccharum spontaneum by multicolor fluorescence in situ hybridization and imaging methods

1 reference

12 December 2020

Ploidy regulation of gene expression

1 reference

12 December 2020