(Q43103649)

13 November 2017

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes (English)

1 reference

13 November 2017

1 reference

13 November 2017

Federico Zambelli

0 references

Giulio Pavesi

1 reference

PMC publication ID

2703934

13 November 2017

language of work or name

English

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publication date

31 May 2009

1 reference

13 November 2017

Nucleic Acids Research

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13 November 2017

1 reference

13 November 2017

Web Server issue

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13 November 2017

W247-52

1 reference

PASTAA: identifying transcription factors associated with sets of co-regulated genes

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

Asap: a framework for over-representation statistics for transcription factor binding sites

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

Global mapping of c-Myc binding sites and target gene networks in human B cells

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

Predicting transcription factor binding sites using local over-representation and comparative genomics

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

Assessing computational tools for the discovery of transcription factor binding sites

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

Detection of functional DNA motifs via statistical over-representation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

DAVID: Database for Annotation, Visualization, and Integrated Discovery

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

An approach to identify over-represented cis-elements in related sequences

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

DNA binding sites: representation and discovery

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

Human-mouse genome comparisons to locate regulatory sites

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703934

15 August 2018

Identifiers

DOI

10.1093/NAR/GKP464

1 reference

journals/nar/ZambelliPP09

13 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

2703934

13 November 2017

PubMed publication ID

19487240

1 reference

PMC publication ID

2703934