(Q38479687)

3 September 2017

TraML--a standard format for exchange of selected reaction monitoring transition lists (English)

1 reference

3 September 2017

Pierre-Alain Binz

0 references

Fredrik Levander

0 references

Lennart Martens

0 references

Ruedi Aebersold

1 reference

3 September 2017

Eric W Deutsch

1 reference

3 September 2017

Steffen Neumann

1 reference

3 September 2017

Matthew Chambers

1 reference

3 September 2017

Jim Shofstahl

1 reference

3 September 2017

David S Campbell

1 reference

3 September 2017

Luis Mendoza

1 reference

3 September 2017

David Ovelleiro

1 reference

3 September 2017

Kenny Helsens

1 reference

3 September 2017

Robert L Moritz

1 reference

3 September 2017

Mi-Youn Brusniak

1 reference

3 September 2017

12 December 2011

1 reference

Molecular & Cellular Proteomics

3 September 2017

1 reference

3 September 2017

1 reference

3 September 2017

1 reference

3 September 2017

R111.015040

1 reference

The mzIdentML data standard for mass spectrometry-based proteomics results

3 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

PASSEL: the PeptideAtlas SRMexperiment library

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

mzML--a community standard for mass spectrometry data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

The PSI semantic validator: a framework to check MIAPE compliance of proteomics data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

A database of mass spectrometric assays for the yeast proteome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

mzML: a single, unifying data format for mass spectrometer output

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

ProteoWizard: open source software for rapid proteomics tools development

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

OpenMS - an open-source software framework for mass spectrometry

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

The minimum information about a proteomics experiment (MIAPE)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Mass spectrometry and protein analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Scoring proteomes with proteotypic peptide probes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Open source system for analyzing, validating, and storing protein identification data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

MRMaid-DB: a repository of published SRM transitions.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

PROTEIOS: an open source proteomics initiative

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322582

31 August 2018

Identifiers

DOI

10.1074/MCP.R111.015040

1 reference

3 September 2017

1 reference

3 September 2017

PubMed publication ID

22159873

1 reference