(Q38146618)

29 August 2017

title

Recommendations for the design and analysis of epigenome-wide association studies (English)

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29 August 2017

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29 August 2017

Benedetta Izzi

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John M Greally

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Alexander Meissner

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29 August 2017

Rafael A Irizarry

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29 August 2017

Karin B Michels

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29 August 2017

Alexandra M Binder

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29 August 2017

Sarah Dedeurwaerder

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29 August 2017

Charles B Epstein

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29 August 2017

Ivo Gut

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29 August 2017

E Andres Houseman

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29 August 2017

Karl T Kelsey

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29 August 2017

Aleksandar Milosavljevic

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29 August 2017

Kimberly D Siegmund

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29 August 2017

language of work or name

English

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publication date

1 October 2013

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29 August 2017

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29 August 2017

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29 August 2017

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29 August 2017

page(s)

949-955

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Genome-wide association studies for complex traits: consensus, uncertainty and challenges

29 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

The NIH Roadmap Epigenomics Mapping Consortium

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Tackling the epigenome: challenges and opportunities for collaboration

21 January 2018

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BLUEPRINT to decode the epigenetic signature written in blood.

21 January 2018

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Quantitative comparison of genome-wide DNA methylation mapping technologies.

21 January 2018

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21 January 2018

Correcting the record

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Analysing and interpreting DNA methylation data

21 January 2018

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Sequencing technology does not eliminate biological variability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Significance analysis and statistical dissection of variably methylated regions

21 January 2018

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High-throughput DNA methylation profiling using universal bead arrays

21 January 2018

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From promises to practical strategies in epigenetic epidemiology

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.2632

Epigenome-wide association studies for common human diseases

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.2632

Epigenetic differences in normal colon mucosa of cancer patients suggest altered dietary metabolic pathways

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.2632

DNA methylation arrays as surrogate measures of cell mixture distribution

21 January 2018

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Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility

21 January 2018

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Peripheral blood immune cell methylation profiles are associated with nonhematopoietic cancers

21 January 2018

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Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus

21 January 2018

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Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.2632

Cell culture-induced aberrant methylation of the imprinted IG DMR in human lymphoblastoid cell lines

21 January 2018

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Comprehensive DNA methylation analysis of human peripheral blood leukocytes and lymphoblastoid cell lines

21 January 2018

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The effects of EBV transformation on gene expression levels and methylation profiles

21 January 2018

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The promises and challenges of epigenetic epidemiology

21 January 2018

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Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.

21 January 2018

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Tackling the widespread and critical impact of batch effects in high-throughput data

21 January 2018

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A unique regulatory phase of DNA methylation in the early mammalian embryo

21 January 2018

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Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

21 January 2018

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DNA methylation dynamics during in vivo differentiation of blood and skin stem cells

21 January 2018

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Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data

21 January 2018

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lumi: a pipeline for processing Illumina microarray

21 January 2018

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

21 January 2018

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EpiExplorer: live exploration and global analysis of large epigenomic datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Adjusting batch effects in microarray expression data using empirical Bayes methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

The influence of aging, environmental exposures and local sequence features on the variation of DNA methylation in blood

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Evolution in health and medicine Sackler colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease

21 January 2018

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Differential variability improves the identification of cancer risk markers in DNA methylation studies profiling precursor cancer lesions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Statistical significance for genomewide studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Disruption of genomic neighbourhood at the imprinted IGF2-H19 locus in Beckwith-Wiedemann syndrome and Silver-Russell syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Epigenetics and gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

GREAT improves functional interpretation of cis-regulatory regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

MEME SUITE: tools for motif discovery and searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

On the design and analysis of gene expression studies in human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2632

Evaluation of the Infinium Methylation 450K technology

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24076989

12 December 2020

inferred from PubMed ID database lookup

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24076989

12 December 2020

inferred from PubMed ID database lookup

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24076989

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NMETH.2632

1 reference

Dimensions Publication ID

29 August 2017

1035683421

0 references

Fatcat ID

release_hnjv4ligqzeedjlt6hyydsww2u

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/hnjv4ligqzeedjlt6hyydsww2u

24 November 2022

mapped directly with Wikidata item

1 reference