(Q37505069)

English

RNA polymerase active center: the molecular engine of transcription

scientific article published on January 2009

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scholarly article

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Europe PubMed Central

PMC publication ID

20 August 2017

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Europe PubMed Central

RNA polymerase active center: the molecular engine of transcription (English)

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Europe PubMed Central

PMC publication ID

20 August 2017

1

object named as

Evgeny Nudler

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publication date

1 January 2009

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Europe PubMed Central

PMC publication ID

20 August 2017

number of pages

27

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based on heuristic

inferred from page(s)

Annual Review of Biochemistry

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Europe PubMed Central

PMC publication ID

20 August 2017

78

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

335-361

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

RNA polymerase elongation factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

(p)ppGpp: still magical?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

RNA polymerase: the vehicle of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

An Allosteric Path to Transcription Termination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis for substrate loading in bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis for transcription elongation by bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Stimulation of RNA polymerase II transcript cleavage activity contributes to maintain transcriptional fidelity in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Transcript-assisted transcriptional proofreading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

pH-dependent conformational switch activates the inhibitor of transcription elongation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Thermodynamic and kinetic modeling of transcriptional pausing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Direct observation of base-pair stepping by RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis for transcription inhibition by tagetitoxin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription inhibition by antibiotic streptolydigin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

NTP-driven translocation and regulation of downstream template opening by multi-subunit RNA polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

The involvement of the aspartate triad of the active center in all catalytic activities of multisubunit RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

ppGpp: a global regulator in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Bacterial transcription elongation factors: new insights into molecular mechanism of action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Thinking quantitatively about transcriptional regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Elongation by RNA polymerase II: the short and long of it

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis for transcription regulation by alarmone ppGpp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Alpha-amanitin blocks translocation by human RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

The RNA polymerase II transcription cycle: cycling through chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Donation of catalytic residues to RNA polymerase active center by transcription factor Gre

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

The RNA polymerase II elongation complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

TFIIS enhances transcriptional elongation through an artificial arrest site in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Structural mechanism for rifampicin inhibition of bacterial rna polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Bacterial RNA polymerase subunit and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Binding of the transcription effector ppGpp to Escherichia coli RNA polymerase is allosteric, modular, and occurs near the N terminus of the beta'-subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

DNA and RNA polymerases: structural diversity and common mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Transcription elongation factor SII.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Transcription elongation: structural basis and mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

The mechanism of intrinsic transcription termination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Modular organization of the catalytic center of RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Protein-RNA interactions in the active center of transcription elongation complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Control of rRNA transcription in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Evidence of DNA bending in transcription complexes imaged by scanning force microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Identification of a 3'-->5' exonuclease activity associated with human RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Genetics of eukaryotic RNA polymerases I, II, and III

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Topology of the RNA polymerase active center probed by chimeric rifampicin-nucleotide compounds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Crystal structure of the GreA transcript cleavage factor from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Intrinsic transcript cleavage activity of RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

RNA cleavage and chain elongation by Escherichia coli DNA-dependent RNA polymerase in a binary enzyme.RNA complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Mode of action of streptolydigin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

23 August 2017

Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

6 September 2017

Characterization of monoclonal antibodies against Escherichia coli core RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

6 September 2017

A structural model of transcription elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

6 September 2017

Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

6 September 2017

A model for the mechanism of polymerase translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

6 September 2017

Structure-based analysis of RNA polymerase function: the largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA-DNA hybrid length

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

14 September 2017

Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

14 September 2017

Transcription through the roadblocks: the role of RNA polymerase cooperation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

14 September 2017

Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

14 September 2017

Fidelity of DNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

14 September 2017

Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

28 September 2017

On the mechanism of rifampicin inhibition of RNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

28 September 2017

Jamming the ratchet of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Allosteric control of the RNA polymerase by the elongation factor RfaH

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Template misalignment in multisubunit RNA polymerases and transcription fidelity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

The role of the lid element in transcription by E. coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Spatial organization of transcription elongation complex in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Transcriptional fidelity and proofreading by RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Mapping of catalytic residues in the RNA polymerase active center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Streptolydigin-resistant Mutants in an Evolutionarily Conserved Region of the β′ Subunit of Escherichia coli RNA Polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

The beta subunit Rif-cluster I is only angstroms away from the active center of Escherichia coli RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

A direct effect of guanosine tetraphosphate on pausing of Escherichia coli RNA polymerase during RNA chain elongation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Influence of Temperature on the Action of Rifampicin on RNA Polymerase in Presence of DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Tagetitoxin inhibits RNA synthesis directed by RNA polymerases from chloroplasts and Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Accuracy of wheat-germ RNA polymerase II. General enzymatic properties and effect of template conformational transition from right-handed B-DNA to left-handed Z-DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

26 June 2018

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Kinetic investigation of Escherichia coli RNA polymerase mutants that influence nucleotide discrimination and transcription fidelity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Functional interplay between the jaw domain of bacterial RNA polymerase and allele-specific residues in the product RNA-binding pocket.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Conversion of active promoter-RNA polymerase complexes into inactive promoter bound complexes in E. coli by the transcription effector, ppGpp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Transcription factors IIF and IIS and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Cooperation between RNA polymerase molecules in transcription elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

In vitro studies of transcript initiation by Escherichia coli RNA polymerase. 1. RNA chain initiation, abortive initiation, and promoter escape at three bacteriophage promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

NTP-driven translocation by human RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Essential steps in the ppGpp-dependent regulation of bacterial ribosomal RNA promoters can be explained by substrate competition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Force and velocity measured for single molecules of RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Crucial role of the RNA:DNA hybrid in the processivity of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

The mediator for stringent control, ppGpp, binds to the beta-subunit of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Transcription processivity: protein-DNA interactions holding together the elongation complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Transcript cleavage factors from E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Four contiguous amino acids define the target for streptolydigin resistance in the beta subunit of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Amanitin-resistant RNA polymerase II mutations are in the enzyme's largest subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 September 2018

Control of intrinsic transcription termination by N and NusA: the basic mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 October 2018

Mechanistic model of the elongation complex of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 October 2018

Mutations in and monoclonal antibody binding to evolutionary hypervariable region of Escherichia coli RNA polymerase beta' subunit inhibit transcript cleavage and transcript elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

2 October 2018

A Ratchet Mechanism of Transcription Elongation and Its Control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

3 December 2018

Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2929140

3 December 2018

The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The specific inhibition of the DNA-directed RNA synthesis by rifamycin

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanism of intrinsic transcription termination and antitermination

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nature of the nucleosomal barrier to RNA polymerase II

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Function of transcription cleavage factors GreA and GreB at a regulatory pause site

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcript cleavage by Thermus thermophilus RNA polymerase. Effects of GreA and anti-GreA factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Swing-Gate Model of Nucleotide Entry into the RNA Polymerase Active Center

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of Thermus aquaticus Gfh1, a Gre-factor paralog that inhibits rather than stimulates transcript cleavage

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the mechanism of streptolydigin inhibition of Escherichia coli RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Reaction of pyrophosphorolysis catalyzed by Escherichia coli RNA polymerase]

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The frequency of transcriptional and translational errors at nonsense codons in the lacZ gene of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amplification and isolation of E. coli nusA protein and studies of its effects on in vitro RNA chain elongation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An RNA polymerase mutant with reduced accuracy of chain elongation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tagetitoxin inhibition of RNA polymerase III transcription results from enhanced pausing at discrete sites and is template-dependent

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of guanosine 3',5'-bisdiphosphate (ppGpp) on rate of transcription elongation in isoleucine-starved Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

1 reference

https://pubmed.ncbi.nlm.nih.gov/19489723

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1146/ANNUREV.BIOCHEM.76.052705.164655

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 August 2017

ResearchGate publication ID

0 references

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