(Q37058515)

18 August 2017

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title

Non-coding RNAs regulating the transcriptional machinery (English)

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18 August 2017

Charlotte Barrandon

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18 August 2017

Béatrice Spiluttini

series ordinal

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18 August 2017

Olivier Bensaude

series ordinal

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18 August 2017

publication date

1 February 2008

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18 August 2017

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inferred from page(s)

published in

Biology of the Cell

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18 August 2017

volume

100

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18 August 2017

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18 August 2017

page(s)

83-95

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The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock

18 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Cyclin Box Structure of the P-TEFb Subunit Cyclin T1 Derived from a Fusion Complex with EIAV Tat

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The structure of cyclin H: common mode of kinase activation and specific features

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Association of polyadenylation cleavage factor I with U1 snRNP

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Regional control of chromatin organization by noncoding roX RNAs and the NURF remodeling complex in Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

HIV-1 TAR RNA: the target of molecular interactions between the virus and its host

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Interplay between 7SK snRNA and oppositely charged regions in HEXIM1 direct the inhibition of P-TEFb

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The transcription-dependent dissociation of P-TEFb-HEXIM1-7SK RNA relies upon formation of hnRNP-7SK RNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Inhibition of HIV-1 replication by P-TEFb inhibitors DRB, seliciclib and flavopiridol correlates with release of free P-TEFb from the large, inactive form of the complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

hnRNP K: one protein multiple processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Differential acetylation of Tat coordinates its interaction with the co-activators cyclin T1 and PCAF

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

HEXIM2, a HEXIM1-related protein, regulates positive transcription elongation factor b through association with 7SK

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Noncoding RNAs in the mammalian central nervous system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The DEAD-box p68/p72 proteins and the noncoding RNA steroid receptor activator SRA: eclectic regulators of disparate biological functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The transcriptional inhibitors, actinomycin D and alpha-amanitin, activate the HIV-1 promoter and favor phosphorylation of the RNA polymerase II C-terminal domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Structure of the Cyclin T binding domain of Hexim1 and molecular basis for its recognition of P-TEFb

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Ligand-independent coactivation of ERalpha AF-1 by steroid receptor RNA activator (SRA) via MAPK activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

roX RNAs are required for increased expression of X-linked genes in Drosophila melanogaster males

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Messenger-RNA-binding proteins and the messages they carry

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Phosphorylation of the RNA polymerase II largest subunit during heat shock and inhibition of transcription in HeLa cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Transcription-dependent association of multiple positive transcription elongation factor units to a HEXIM multimer

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Induction of heat shock protein transcripts and B2 transcripts by various stresses in Chinese hamster cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Inhibition of Tat activity by the HEXIM1 protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Dynamics of human immunodeficiency virus transcription: P-TEFb phosphorylates RD and dissociates negative effectors from the transactivation response element

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Promoter proximal splice sites enhance transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The vertebrate 7S K RNA separates hagfish (Myxine glutinosa) and lamprey (Lampetra fluviatilis)

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

SLIRP, a small SRA binding protein, is a nuclear receptor corepressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Modulation of a P-TEFb functional equilibrium for the global control of cell growth and differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Dosage compensation in mammals: fine-tuning the expression of the X chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Alternative splicing of the first intron of the steroid receptor RNA activator (SRA) participates in the generation of coding and noncoding RNA isoforms in breast cancer cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A transcription inhibitor, actinomycin D, enhances HIV-1 replication through an interleukin-6-dependent pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Acetylation of Tat defines a cyclinT1-independent step in HIV transactivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Chemical inhibition of the TFIIH-associated kinase Cdk7/Kin28 does not impair global mRNA synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

RNA maps reveal new RNA classes and a possible function for pervasive transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Expression and function of human steroid receptor RNA activator in prostate cancer cells: role of endogenous hSRA protein in androgen receptor-mediated transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A small modulatory dsRNA specifies the fate of adult neural stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Distinct RNA motifs are important for coactivation of steroid hormone receptors by steroid receptor RNA activator (SRA).

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Analysis of the large inactive P-TEFb complex indicates that it contains one 7SK molecule, a dimer of HEXIM1 or HEXIM2, and two P-TEFb molecules containing Cdk9 phosphorylated at threonine 186

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

HEXIM1 is a promiscuous double-stranded RNA-binding protein and interacts with RNAs in addition to 7SK in cultured cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

P-TEFb kinase is required for HIV Tat transcriptional activation in vivo and in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The La protein-RNA complex surfaces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Intergenic transcripts regulate the epigenetic state of rRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Combinatorial control of gene expression by nuclear receptors and coregulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Non-coding RNAs in the nervous system

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

MAQ1 and 7SK RNA interact with CDK9/cyclin T complexes in a transcription-dependent manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Spliceosome assembly in yeast: one ChIP at a time?

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Analysis of U1 small nuclear RNA interaction with cyclin H.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Controlling the elongation phase of transcription with P-TEFb

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Phosphorylation and functions of the RNA polymerase II CTD

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

DSIF and NELF interact with RNA polymerase II elongation complex and HIV-1 Tat stimulates P-TEFb-mediated phosphorylation of RNA polymerase II and DSIF during transcription elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Illuminating the silence: understanding the structure and function of small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Bacterial enhancer-binding proteins: unlocking sigma54-dependent gene transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Genome regulation by polycomb and trithorax proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Identification of a cyclin T-binding domain in Hexim1 and biochemical analysis of its binding competition with HIV-1 Tat

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

RNA-mediated response to heat shock in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Sharp, an inducible cofactor that integrates nuclear receptor repression and activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

RNA aptamers directed to discrete functional sites on a single protein structural domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Inhibiting lentiviral replication by HEXIM1, a cellular negative regulator of the CDK9/cyclin T complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

6S RNA function enhances long-term cell survival

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A highly conserved 6S RNA structure is required for regulation of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

6S RNA regulation of pspF transcription leads to altered cell survival at high pH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Activation of human immunodeficiency virus type 1 by DNA damage in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Dynamic remodelling of human 7SK snRNP controls the nuclear level of active P-TEFb

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Synthesis-mediated release of a small RNA inhibitor of RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

6S RNA regulates E. coli RNA polymerase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A subfamily of RNA-binding DEAD-box proteins acts as an estrogen receptor alpha coactivator through the N-terminal activation domain (AF-1) with an RNA coactivator, SRA

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

An HIV feedback resistor: auto-regulatory circuit deactivator and noise buffer

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Noncoding RNAs and intranuclear positioning in monoallelic gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Inhibition of P-TEFb (CDK9/Cyclin T) kinase and RNA polymerase II transcription by the coordinated actions of HEXIM1 and 7SK snRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A human immunodeficiency virus type 1 Tat-like arginine-rich RNA-binding domain is essential for HEXIM1 to inhibit RNA polymerase II transcription through 7SK snRNA-mediated inactivation of P-TEFb

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Compensatory contributions of HEXIM1 and HEXIM2 in maintaining the balance of active and inactive positive transcription elongation factor b complexes for control of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Noncoding RNAs and gene silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

HIV-1 TAR RNA enhances the interaction between Tat and cyclin T1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

A developmental view of microRNA function

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Pus3p- and Pus1p-dependent pseudouridylation of steroid receptor RNA activator controls a functional switch that regulates nuclear receptor signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Tat modifies the activity of CDK9 to phosphorylate serine 5 of the RNA polymerase II carboxyl-terminal domain during human immunodeficiency virus type 1 transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

Transcription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

The transcriptional complexity of the TFIIH complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBC20070090

21 January 2018

Identifiers

DOI

10.1042/BC20070090

1 reference

18 August 2017

1 reference