(Q36542085)

English

Preferential interaction of the his pause RNA hairpin with RNA polymerase β subunit residues 904–950 correlates with strong transcriptional pausing

scientific article published on August 5, 1997

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Preferential interaction of the his pause RNA hairpin with RNA polymerase beta subunit residues 904-950 correlates with strong transcriptional pausing (English)

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Preferential interaction of the his pause RNA hairpin with RNA polymerase β subunit residues 904–950 correlates with strong transcriptional pausing (English)

1 reference

10.1073/PNAS.94.16.8433

https://api.crossref.org/works/10.1073/PNAS.94.16.8433

9 November 2024

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9237994

9 November 2024

author name string

D. Wang

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9237994

9 November 2024

K. Severinov

2

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9237994

9 November 2024

R. Landick

3

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9237994

9 November 2024

language of work or name

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publication date

1 August 1997

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

5 August 1997

1 reference

National Center for Biotechnology Information

PubMed publication ID

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=9237994

9 November 2024

full work available at URL

https://europepmc.org/articles/pmc22946?pdf=render

Portable Document Format

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9237994

9 November 2024

https://europepmc.org/articles/PMC22946

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9237994

9 November 2024

https://europepmc.org/articles/PMC22946?pdf=render

Portable Document Format

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9237994

9 November 2024

https://pnas.org/doi/pdf/10.1073/pnas.94.16.8433

1 reference

10.1073/PNAS.94.16.8433

https://api.crossref.org/works/10.1073/PNAS.94.16.8433

9 November 2024

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

94

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

16

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

8433-8438

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Effects of neutral salts on RNA chain elongation and pausing by Escherichia coli RNA polymerase

1 reference

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30 September 2017

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

1 reference

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30 September 2017

The shrewd grasp of RNA polymerase

1 reference

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30 September 2017

Protein-RNA interactions in the active center of transcription elongation complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Transcription termination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Control of transcription termination by RNA-binding proteins

1 reference

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30 September 2017

Genetics of eukaryotic RNA polymerases I, II, and III

1 reference

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30 September 2017

Assembly of functional Escherichia coli RNA polymerase containing beta subunit fragments

1 reference

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30 September 2017

Photocrosslinking of 5-Iodouracil-Substituted RNA and DNA to Proteins

1 reference

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30 September 2017

Transcription termination at intrinsic terminators: the role of the RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

The Salmonella typhimurium his operon leader region contains an RNA hairpin-dependent transcription pause site. Mechanistic implications of the effect on pausing of altered RNA hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Insertional mutagenesis of a plasmid-borne Escherichia coli rpoB gene reveals alterations that inhibit beta-subunit assembly into RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Suppressor analysis of temperature-sensitive mutations of the largest subunit of RNA polymerase I in Saccharomyces cerevisiae: a suppressor gene encodes the second-largest subunit of RNA polymerase I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

RNA chain elongation by Escherichia coli RNA polymerase. Factors affecting the stability of elongating ternary complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Activation of HIV transcription by Tat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Control of Transcription Termination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

RNA polymerase slides home: pause and termination site recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

30 September 2017

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Termination-altering amino acid substitutions in the beta' subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Crosslinking of an iodo-uridine-RNA hairpin to a single site on the human U1A N-terminal RNA binding domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Genetic studies on the beta subunit of Escherichia coli RNA polymerase. VIII. Localisation of a region involved in promoter selectivity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

An antitermination protein engages the elongating transcription apparatus at a promoter-proximal recognition site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

RNA secondary structure is an integral part of the in vitro mechanism of attenuation in simian virus 40.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Amino acid changes in conserved regions of the beta-subunit of Escherichia coli RNA polymerase alter transcription pausing and termination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Mapping of trypsin cleavage and antibody-binding sites and delineation of a dispensable domain in the beta subunit of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

1 reference

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28 June 2018

Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=22946

28 June 2018

Structure of RNA and DNA chains in paused transcription complexes containing Escherichia coli RNA polymerase

1 reference

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The relationship between function and DNA sequence in an intercistronic regulatory region in phage λ

1 reference

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The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

1 reference

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Transcription processivity: protein-DNA interactions holding together the elongation complex.

1 reference

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Three-dimensional structure of E. coli core RNA polymerase: promoter binding and elongation conformations of the enzyme.

1 reference

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21 September 2018

Stability of Escherichia coli transcription complexes near an intrinsic terminator.

1 reference

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21 September 2018

A zinc-binding region in the beta' subunit of RNA polymerase is involved in antitermination of early transcription of phage HK022.

1 reference

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1 reference

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Functional importance of sequence in the stem-loop of a transcription terminator

1 reference

https://pubmed.ncbi.nlm.nih.gov/9237994

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

1 reference

https://pubmed.ncbi.nlm.nih.gov/9237994

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the termination phenotypes of rifampicin-resistant mutants

1 reference

https://pubmed.ncbi.nlm.nih.gov/9237994

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping of trypsin cleavage and antibody-binding sites and delineation of a dispensable domain in the beta subunit of Escherichia coli RNA polymerase.

38

1 reference

10.1073/PNAS.94.16.8433

https://api.crossref.org/works/10.1073/PNAS.94.16.8433

9 November 2024

Identifiers

10.1073/PNAS.94.16.8433

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

1997PNAS...94.8433W

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

ResearchGate publication ID

0 references

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