(Q36448960)

14 August 2017

Microarray analysis of transposition targets in Escherichia coli: the impact of transcription (English)

1 reference

14 August 2017

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Dipankar Manna

1 reference

14 August 2017

Adam M Breier

series ordinal

1 reference

14 August 2017

N Patrick Higgins

series ordinal

1 reference

14 August 2017

language of work or name

English

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publication date

21 June 2004

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Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

1 reference

inferred from page(s)

published in

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14 August 2017

101

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14 August 2017

1 reference

14 August 2017

9780-9785

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Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Prophages and bacterial genomics: what have we learned so far?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

GEPAS: A web-based resource for microarray gene expression data analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Role of SeqA and Dam in Escherichia coli gene expression: a global/microarray analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Mismatch-targeted transposition of Mu: a new strategy to map genetic polymorphism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Mu and IS1 transpositions exhibit strong orientation bias at the Escherichia coli bgl locus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Significance analysis of microarrays applied to the ionizing radiation response

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Initial sequencing and analysis of the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

High-density microarray-mediated gene expression profiling of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Genome-wide location and function of DNA binding proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Null mutation of the dam or seqA gene suppresses temperature-sensitive lethality but not hypersensitivity to novobiocin of muk null mutants.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Target site selection by Tn7: attTn7 transcription and target activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Binding of SeqA protein to DNA requires interaction between two or more complexes bound to separate hemimethylated GATC sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Why are antibiotic resistance genes so resistant to elimination?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

The complete genome sequence of Escherichia coli K-12

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

DNA transposition: jumping gene machine, some assembly required.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

'Muprints' of the lac operon demonstrate physiological control over the randomness of in vivo transposition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Specificity of mini-Mu bacteriophage insertions in a small plasmid

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Transpositional recombination: mechanistic insights from studies of mu and other elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Terminus region of the chromosome in Escherichia coli inhibits replication forks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

The isolation and characterisation of a plaque-forming derivative of bacteriophage Mu carrying a fragment of Tn3 conferring ampicillin resistance

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Molecular model for the transposition and replication of bacteriophage Mu and other transposable elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Target site selection in transposition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

SeqA: a negative modulator of replication initiation in E. coli

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Mutations in the lactose operon caused by bacteriophage Mu

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Transitory cis complementation: a method for providing transposition functions to defective transposons.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Transcriptional occlusion of transposon targets

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Phage Mu transposition immunity reflects supercoil domain structure of the chromosome

28 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0400745101

Direct observation of single MuB polymers: evidence for a DNA-dependent conformational change for generating an active target complex

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0400745101

Comparison of recombination in vitro and in E. coli cells: measure of the effective concentration of DNA in vivo.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0400745101

Segregation of the Escherichia coli chromosome terminus

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=470751

Tn7 transposes proximal to DNA double-strand breaks and into regions where chromosomal DNA replication terminates

21 September 2018

1 reference

12 December 2020

Mutations affecting localization of an Escherichia coli outer membrane protein, the bacteriophage lambda receptor

1 reference

12 December 2020

Target immunity of Mu transposition reflects a differential distribution of Mu B protein

1 reference

12 December 2020

E. coli oriC and the dnaA gene promoter are sequestered from dam methyltransferase following the passage of the chromosomal replication fork

1 reference

12 December 2020

Interplay between recombination, cell division and chromosome structure during chromosome dimer resolution in Escherichia coli

1 reference

12 December 2020

Target immunity during Mu DNA transposition. Transpososome assembly and DNA looping enhance MuA-mediated disassembly of the MuB target complex

1 reference

12 December 2020

Bacteriophage Mu-1: a tool to transpose and to localize bacterial genes

1 reference

12 December 2020

Target site selection in transposition of phage Mu

1 reference

12 December 2020

Analysis of DNA replication in vivo by flow cytometry

1 reference

12 December 2020

Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0400745101

1 reference

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

15210965

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