(Q35647310)

9 August 2017

title

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures (English)

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protein structure prediction

9 August 2017

main subject

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Alm E

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9 August 2017

Baker D

series ordinal

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9 August 2017

language of work or name

English

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publication date

1 September 1999

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Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

published in

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9 August 2017

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9 August 2017

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9 August 2017

page(s)

11305-11310

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A simple model for calculating the kinetics of protein folding from three-dimensional structures

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Matching theory and experiment in protein folding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Obligatory steps in protein folding and the conformational diversity of the transition state

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

The sequences of small proteins are not extensively optimized for rapid folding by natural selection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Contact order, transition state placement and the refolding rates of single domain proteins.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Pathways for protein folding: is a new view needed?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Folding dynamics and mechanism of beta-hairpin formation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Functional rapidly folding proteins from simplified amino acid sequences.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Folding funnels and energy landscapes of larger proteins within the capillarity approximation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

An inverse correlation between loop length and stability in a four-helix-bundle protein.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Characterizing transition states in protein folding: an essential step in the puzzle

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Toward an outline of the topography of a realistic protein-folding funnel

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

RASMOL: biomolecular graphics for all

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Solvation energy in protein folding and binding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

The folding of an enzyme. IV. Structure of an intermediate in the refolding of barnase analysed by a protein engineering procedure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Funnels, pathways, and the energy landscape of protein folding: a synthesis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.96.20.11305

Glutamine, alanine or glycine repeats inserted into the loop of a protein have minimal effects on stability and folding rates

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

Loop length, intramolecular diffusion and protein folding

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.96.20.11305

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.96.20.11305

Loop length, intramolecular diffusion and protein folding

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=18029

The magnitude of the backbone conformational entropy change in protein folding

15 November 2018

1 reference

12 December 2020

Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2

1 reference

12 December 2020

The energy landscape of a fast-folding protein mapped by Ala-->Gly substitutions

1 reference

12 December 2020

Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold

1 reference

12 December 2020

Protein folding dynamics: quantitative comparison between theory and experiment

1 reference

12 December 2020

Folding nucleus: specific or multiple? Insights from lattice models and experiments

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.96.20.11305

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9 August 2017

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9 August 2017

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