(Q35545826)

8 August 2017

title

The TIGR Rice Genome Annotation Resource: improvements and new features (English)

1 reference

8 August 2017

1 reference

Kevin Childs

0 references

John Hamilton

0 references

Jennifer Wortman

1 reference

8 August 2017

Francoise Thibaud-Nissen

object named as

Françoise Thibaud-Nissen

1 reference

8 August 2017

Shu Ouyang

1 reference

8 August 2017

Wei Zhu

1 reference

8 August 2017

Haining Lin

1 reference

8 August 2017

Matthew Campbell

1 reference

8 August 2017

Renae L Malek

1 reference

8 August 2017

Yuandan Lee

1 reference

8 August 2017

Li Zheng

1 reference

8 August 2017

Joshua Orvis

1 reference

8 August 2017

Brian Haas

1 reference

8 August 2017

C Robin Buell

1 reference

8 August 2017

language of work or name

English

0 references

publication date

1 December 2006

1 reference

8 August 2017

published in

Nucleic Acids Research

1 reference

8 August 2017

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8 August 2017

issue

Database issue

1 reference

8 August 2017

page(s)

D883-7

1 reference

The TIGR Plant Transcript Assemblies database

8 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Intron gain and loss in segmentally duplicated genes in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The map-based sequence of the rice genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The institute for genomic research Osa1 rice genome annotation database

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The Genomes of Oryza sativa: a history of duplications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Rice Annotation Database (RAD): a contig-oriented database for map-based rice genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Robust-LongSAGE (RL-SAGE): a substantially improved LongSAGE method for gene discovery and transcriptome analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Comparative DNA sequence analysis of wheat and rice genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Comparison of genes among cereals

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The generic genome browser: a building block for a model organism system database

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Proteomic survey of metabolic pathways in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Rice as a model for cereal genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Comparative genetics in the grasses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Duplication and DNA segmental loss in the rice genome: implications for diploidization.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

DAGchainer: a tool for mining segmental genome duplications and synteny

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Evidence that rice and other cereals are ancient aneuploids

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

In-Depth View of Structure, Activity, and Evolution of Rice Chromosome 10

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1751532

Ancestral genome duplication in rice

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17145706

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The use of the Monsanto draft rice genome sequence in research

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17145706

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL976

1 reference

journals/nar/OuyangZHLCCTMLZOHWB07

8 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

8 August 2017

1 reference