(Q35008277)

5 August 2017

title

Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins (English)

1 reference

5 August 2017

Huan-Xiang Zhou

1 reference

5 August 2017

language of work or name

English

0 references

publication date

4 May 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

published in

1 reference

5 August 2017

volume

108

1 reference

5 August 2017

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5 August 2017

page(s)

8651-8656

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Theory and simulation on the kinetics of protein-ligand binding coupled to conformational change.

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Physics of protein–DNA interactions: mechanisms of facilitated target search

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Theory of site-specific DNA-protein interactions in the presence of conformational fluctuations of DNA binding domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

From induced fit to conformational selection: a continuum of binding mechanism controlled by the timescale of conformational transitions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Uracil-DNA glycosylase: Structural, thermodynamic and kinetic aspects of lesion search and recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Nonspecifically bound proteins spin while diffusing along DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Facilitated diffusion with DNA coiling.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

An end to 40 years of mistakes in DNA-protein association kinetics?

8 July 2018

1 reference

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Fundamental aspects of protein-protein association kinetics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase.

8 July 2018

1 reference

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A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles

8 July 2018

1 reference

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Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

8 July 2018

1 reference

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Kinetics of target site localization of a protein on DNA: a stochastic approach.

8 July 2018

1 reference

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How do site-specific DNA-binding proteins find their targets?

8 July 2018

1 reference

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Physical constraints and functional characteristics of transcription factor-DNA interaction.

8 July 2018

1 reference

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Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin

8 July 2018

1 reference

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Theory and simulation of the time-dependent rate coefficients of diffusion-influenced reactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

The lac repressor-operator interaction. 3. Kinetic studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

8 July 2018

The lac operator is DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Diffusion in a rough potential

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3102365

Specific Binding of the λ Phage Repressor to λ DNA

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Crystal structure of an engineered Cro monomer bound nonspecifically to DNA: possible implications for nonspecific binding by the wild-type protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Protein association with circular DNA: rate enhancement by nonspecific binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Enhancement of Association Rates by Nonspecific Binding to DNA and Cell Membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Gated binding of ligands to proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101555108

Kinetic studies on Cro repressor-operator DNA interaction

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21543711

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1101555108

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference