(Q34810481)

4 August 2017

title

UNAFold: software for nucleic acid folding and hybridization (English)

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4 August 2017

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Nicholas R Markham

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4 August 2017

Michael Zuker

series ordinal

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4 August 2017

language of work or name

English

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publication date

1 January 2008

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Methods in Molecular Biology

4 August 2017

published in

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4 August 2017

volume

453

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4 August 2017

page(s)

3-31

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Sfold web server for statistical folding and rational design of nucleic acids

4 August 2017

cites work

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Fast folding and comparison of RNA secondary structures

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Vienna RNA secondary structure server

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Some rules in the ordering of nucleotides in the DNA.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Mfold web server for nucleic acid folding and hybridization prediction

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Complete suboptimal folding of RNA and the stability of secondary structures.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

A statistical sampling algorithm for RNA secondary structure prediction

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

RnaViz, a program for the visualisation of RNA secondary structure

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

RnaViz 2: an improved representation of RNA secondary structure.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Comparative and functional anatomy of group II catalytic introns—a review

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Structural plasticity in RNA and its role in the regulation of protein translation in coliphage Q beta

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Molecular beacons: probes that fluoresce upon hybridization

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

DINAMelt web server for nucleic acid melting prediction

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Using reliability information to annotate RNA secondary structures

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Compilation and analysis of group II intron insertions in bacterial genomes: evidence for retroelement behavior

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

RNAML: a standard syntax for exchanging RNA information.

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

The thermodynamics of DNA structural motifs

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1007/978-1-60327-429-6_1

Identifiers

DOI

10.1007/978-1-60327-429-6_1

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4 August 2017

1 reference