(Q34713684)

4 August 2017

title

Characterization and use of an unprecedentedly bright and structurally non-perturbing fluorescent DNA base analogue (English)

1 reference

4 August 2017

Karl Börjesson

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Jerker Mårtensson

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Bo Albinsson

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Peter Sandin

1 reference

4 August 2017

Hong Li

series ordinal

1 reference

4 August 2017

Tom Brown

series ordinal

1 reference

4 August 2017

L Marcus Wilhelmsson

series ordinal

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4 August 2017

language of work or name

English

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publication date

14 November 2007

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4 August 2017

published in

Nucleic Acids Research

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4 August 2017

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4 August 2017

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4 August 2017

page(s)

157-167

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2-Aminopurine flipped into the active site of the adenine-specific DNA methyltransferase M.TaqI: crystal structures and time-resolved fluorescence

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescent HIV-1 Dimerization Initiation Site: design, properties, and use for ligand discovery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescent pyrimidine ribonucleotide: synthesis, enzymatic incorporation, and utilization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescent DNA base replacements: Reporters and sensors for biological systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Ultrafast dynamics in DNA: "fraying" at the end of the helix

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Sensing metal ions with DNA building blocks: fluorescent pyridobenzimidazole nucleosides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Dynamics of nucleotide incorporation: snapshots revealed by 2-aminopurine fluorescence studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescent properties of DNA base analogue tC upon incorporation into DNA--negligible influence of neighbouring bases on fluorescence quantum yield

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Not so crystal clear: the structure of the human telomere G-quadruplex in solution differs from that present in a crystal

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

DNA adopts normal B-form upon incorporation of highly fluorescent DNA base analogue tC: NMR structure and UV-Vis spectroscopy characterization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescence-based approach for detecting and characterizing antibiotic-induced conformational changes in ribosomal RNA: comparing aminoglycoside binding to prokaryotic and eukaryotic ribosomal RNA sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Synthesis and fluorescence characterization of pteridine adenosine nucleoside analogs for DNA incorporation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

DNA binding induces dissociation of the multimeric form of HIV-1 integrase: a time-resolved fluorescence anisotropy study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

HU binding to DNA: evidence for multiple complex formation and DNA bending

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

4-amino-1H-benzo[g]quinazoline-2-one: a fluorescent analog of cytosine to probe protonation sites in triplex forming oligonucleotides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

A cytosine analog that confers enhanced potency to antisense oligonucleotides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Electron transfer between bases in double helical DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Benzoquinazoline derivatives as substitutes for thymine in nucleic acid complexes. Use of fluorescence emission of benzo[g]quinazoline-2,4-(1H,3H)-dione in probing duplex and triplex formation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescence properties of a new guanosine analog incorporated into small oligonucleotides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescence emission of ethidium bromide intercalated in defined DNA duplexes: evaluation of hydrodynamics components

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Incorporation of a fluorescent guanosine analog into oligonucleotides and its application to a real time assay for the HIV-1 integrase 3'-processing reaction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2248743

Clear distinction of purine bases on the complementary strand by a fluorescence change of a novel fluorescent nucleoside.

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

Design of base-discriminating fluorescent nucleoside and its application to t/c SNP typing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

Simple fluorescent pyrimidine analogues detect the presence of DNA abasic sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

Power-law solvation dynamics in DNA over six decades in time.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

Facile synthesis of a fluorescent deoxycytidine analogue suitable for probing the RecA nucleoprotein filament

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

DNA-mediated charge transport requires conformational motion of the DNA bases: elimination of charge transport in rigid glasses at 77 K.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

DNA charge transport: conformationally gated hopping through stacked domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

2-Aminopurine: a probe of structural dynamics and charge transfer in DNA and DNA:RNA hybrids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

A highly fluorescent DNA base analogue that forms Watson-Crick base pairs with guanine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

Synthesis and oligonucleotide incorporation of fluorescent cytosine analogue tC: a promising nucleic acid probe

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

Conformational dynamics of DNA polymerase probed with a novel fluorescent DNA base analogue

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

A Cytosine Analogue Capable of Clamp-Like Binding to a Guanine in Helical Nucleic Acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

Characterization of the overall and internal dynamics of short oligonucleotides by depolarized dynamic light scattering and NMR relaxation measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1006

A fluorescent modification of adenosine triphosphate with activity in enzyme systems: 1,N 6 -ethenoadenosine triphosphate

21 January 2018

1 reference

12 December 2020

Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

1 reference

12 December 2020

The amplitude of local angular motion of purines in DNA in solution

1 reference

12 December 2020

Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption

1 reference

12 December 2020

Fluorescence properties of pteridine nucleoside analogs as monomers and incorporated into oligonucleotides

1 reference

12 December 2020

A fluorescent base analog for probing triple helix formation

1 reference

12 December 2020

Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue

1 reference

12 December 2020

A nucleoside that contains a rigid nitroxide spin label: a fluorophore in disguise

1 reference

12 December 2020

Probing DNA polymerase-DNA interactions: examining the template strand in exonuclease complexes using 2-aminopurine fluorescence and acrylamide quenching

1 reference

12 December 2020

Synthesis of Amino- and Guanidino-G-Clamp PNA Monomers

1 reference

12 December 2020

High-affinity peptide nucleic acid oligomers containing tricyclic cytosine analogues

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKM1006

1 reference

4 August 2017

1 reference

4 August 2017

1 reference