(Q34365827)

1 August 2017

title

Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes (English)

1 reference

1 August 2017

main subject

computational biology

1 reference

alternative mRNA splicing, via spliceosome

inferred from title

1 reference

Hitomi Itoh

1 reference

1 August 2017

Takanori Washio

series ordinal

1 reference

1 August 2017

Masaru Tomita

series ordinal

1 reference

1 August 2017

language of work or name

English

0 references

publication date

1 July 2004

1 reference

1 August 2017

1 reference

1 August 2017

1 reference

1 August 2017

1 reference

1 August 2017

page(s)

1005-1018

1 reference

How prevalent is functional alternative splicing in the human genome?

1 August 2017

cites work

1 reference

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

6 July 2018

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A novel algorithm for computational identification of contaminated EST libraries

6 July 2018

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A Drosophila full-length cDNA resource

6 July 2018

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Factors influencing the identification of transcription factor binding sites by cross-species comparison.

6 July 2018

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Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome

6 July 2018

1 reference

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The human XPC DNA repair gene: arrangement, splice site information content and influence of a single nucleotide polymorphism in a splice acceptor site on alternative splicing and function

6 July 2018

1 reference

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Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Predictive identification of exonic splicing enhancers in human genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Discovery of regulatory elements by a computational method for phylogenetic footprinting

6 July 2018

1 reference

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Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Functional annotation of a full-length Arabidopsis cDNA collection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

A genomic view of alternative splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

A computational analysis of sequence features involved in recognition of short introns

6 July 2018

1 reference

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Sorting out the complexity of SR protein functions

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

6 July 2018

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Frequent alternative splicing of human genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

A computer program for aligning a cDNA sequence with a genomic DNA sequence

6 July 2018

1 reference

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Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Introns and reading frames: correlation between splicing sites and their codon positions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Factors affecting authentic 5' splice site selection in plant nuclei

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

A sequence compilation and comparison of exons that are alternatively spliced in neurons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Alternative mRNA splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Information content of individual genetic sequences.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Using information content and base frequencies to distinguish mutations from genetic polymorphisms in splice junction recognition sites.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370592

Molecular biology and evolution. Can genes explain biological complexity?

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15208437

12 December 2020

inferred from PubMed ID database lookup

The Plasma Membrane H+-ATPase (A Highly Regulated Enzyme with Multiple Physiological Functions)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15208437

12 December 2020

inferred from PubMed ID database lookup

What If There Are Only 30,000 Human Genes?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15208437

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1261/RNA.5221604

1 reference

1 August 2017

1 reference

1 August 2017

1 reference