(Q34249786)

31 July 2017

title

Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice (English)

1 reference

31 July 2017

Jeffrey L Bennetzen

1 reference

31 July 2017

Jianxin Ma

1 reference

31 July 2017

language of work or name

English

0 references

publication date

28 December 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

31 July 2017

published in

1 reference

31 July 2017

volume

103

1 reference

31 July 2017

1 reference

31 July 2017

page(s)

383-388

1 reference

Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Centromeric chromatin: what makes it unique?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

The Genomes of Oryza sativa: a history of duplications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Mechanisms of recent genome size variation in flowering plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Consistent over-estimation of gene number in complex plant genomes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

6 July 2018

What's in a centromere?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Sequence organization and functional annotation of human centromeres

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Rapid recent growth and divergence of rice nuclear genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Structural features of the rice chromosome 4 centromere

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Sequencing of a rice centromere uncovers active genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

A molecular view of plant centromeres

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Genome-wide intraspecific DNA-sequence variations in rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Centromere satellites from Arabidopsis populations: maintenance of conserved and variable domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Sequence analysis of a functional Drosophila centromere

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Long terminal repeat retrotransposons of Oryza sativa

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

An integrated physical and genetic map of the rice genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

MEGA2: molecular evolutionary genetics analysis software

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Genomic and genetic definition of a functional human centromere

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

The Sequence of the Human Genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Retrotransposon evolution in diverse plant genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

6 July 2018

Plant retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Polymorphisms and genomic organization of repetitive DNA from centromeric regions of Arabidopsis chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

The paleontology of intergene retrotransposons of maize

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Nested retrotransposons in the intergenic regions of the maize genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Centromeres of budding and fission yeasts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

Centromeres: proteins, protein complexes, and repeated domains at centromeres of simple eukaryotes

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

Genetic definition and sequence analysis of Arabidopsis centromeres

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

Composition and structure of the centromeric region of rice chromosome 8.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

LTR_STRUC: a novel search and identification program for LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

Evolution of Repeated DNA Sequences by Unequal Crossover

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

Retrotransposon-related DNA sequences in the centromeres of grass chromosomes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1326179

A highly repeated DNA sequence in Arabidopsis thaliana

28 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509810102

Initial sequencing and analysis of the human genome

21 January 2018

1 reference

12 December 2020

Physical maps and recombination frequency of six rice chromosomes

1 reference

12 December 2020

Maize centromeres: organization and functional adaptation in the genetic background of oat

1 reference

12 December 2020

Shotgun sequence assembly and recent segmental duplications within the human genome

1 reference

12 December 2020

DNA methylation in eukaryotes

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0509810102

1 reference

31 July 2017

0 references

1 reference

31 July 2017

1 reference