(Q34248195)

31 July 2017

title

Genome-wide structure and organization of eukaryotic pre-initiation complexes (English)

1 reference

31 July 2017

Ho Sung Rhee

1 reference

31 July 2017

B Franklin Pugh

series ordinal

1 reference

31 July 2017

language of work or name

English

0 references

publication date

18 January 2012

1 reference

31 July 2017

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31 July 2017

volume

483

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31 July 2017

issue

7389

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31 July 2017

page(s)

295-301

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Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Functional consequences of bidirectional promoters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Uniform transitions of the general RNA polymerase II transcription complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

High-resolution transcription atlas of the mitotic cell cycle in budding yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

RNA polymerase II-TFIIB structure and mechanism of transcription initiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Nucleosome positioning and gene regulation: advances through genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Bidirectional promoters generate pervasive transcription in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Ctk1 promotes dissociation of basal transcription factors from elongating RNA polymerase II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Two strategies for gene regulation by promoter nucleosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

GeneTrack--a genomic data processing and visualization framework.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

What is a gene, post-ENCODE? History and updated definition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

A high-resolution map of transcription in the yeast genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Novel interaction of the Hsp90 chaperone machine with Ssl2, an essential DNA helicase in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Structure and mechanism of the RNA polymerase II transcription machinery

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Disassembly of transcriptional regulatory complexes by molecular chaperones

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Kin28 is found within TFIIH and a Kin28-Ccl1-Tfb3 trimer complex with differential sensitivities to T-loop phosphorylation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Promoter-specific shifts in transcription initiation conferred by yeast TFIIB mutations are determined by the sequence in the immediate vicinity of the start sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Redundant roles for the TFIID and SAGA complexes in global transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Mechanism of ATP-dependent promoter melting by transcription factor IIH

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Bromodomain factor 1 corresponds to a missing piece of yeast TFIID.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Dissecting the regulatory circuitry of a eukaryotic genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

The general transcription factors of RNA polymerase II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

The role of general initiation factors in transcription by RNA polymerase II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA photocrosslinking: organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Dynamic protein-DNA architecture of a yeast heat shock promoter

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

Five intermediate complexes in transcription initiation by RNA polymerase II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306527

The role of general initiation factors in transcription by RNA polymerase II

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

Identification and distinct regulation of yeast TATA box-containing genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

Site-specific cross-linking of TBP in vivo and in vitro reveals a direct functional interaction with the SAGA subunit Spt3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

Dual roles for transcription factor IIF in promoter escape by RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

Subunits of yeast RNA polymerase II transcription factor TFIIH encoded by the CCL1 gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

A transcription-independent role for TFIIB in gene looping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

A transcription reinitiation intermediate that is stabilized by activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10799

DNA melting on yeast RNA polymerase II promoters

21 January 2018

1 reference

12 December 2020

RNA polymerase II initiation factor interactions and transcription start site selection

1 reference

12 December 2020

The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II

1 reference

12 December 2020

Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE10799

1 reference

Dimensions Publication ID

31 July 2017

1037178469

0 references

Fatcat ID

release_6kdkfmrxdfgenchikfetbtng54

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6kdkfmrxdfgenchikfetbtng54

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3306527

1 reference

31 July 2017

1 reference