(Q33825350)

29 July 2017

title

Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis (English)

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29 July 2017

de Smit MH

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29 July 2017

van Duin J

series ordinal

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29 July 2017

language of work or name

English

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publication date

1 October 1990

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

7668-7672

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Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Characterization of translational initiation sites in E. coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

The ribosome binding sites recognized by E. coli ribosomes have regions with signal character in both the leader and protein coding segments.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Initial velocity kinetic analysis of 30 S initiation complex formation in an in vitro translation system derived from Escherichia coli.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Structure and functions of ribosomal protein S1.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

2 New M13 vectors for cloning

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Plasmid vectors for high-efficiency expression controlled by the promoter of coliphage lambda

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Structure analysis of three T7 late mRNA ribosome binding sites

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

RNA-helix-destabilizing proteins.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

The influence of mRNA primary and secondary structure on human IFN-γ gene expression inE. coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Growth rate of polypeptide chains as a function of the cell growth rate in a mutant of Escherichia coli 15

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Optimizing the expression in E. coli of a synthetic gene encoding somatomedin-C (IGF-I).

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Rapid and efficient site-specific mutagenesis without phenotypic selection

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Determination of the RNA secondary structure that regulates lysis gene expression in bacteriophage MS2.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Information content of binding sites on nucleotide sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Potential secondary structure at translation-initiation sites

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Influence of the codon following the AUG initiation codon on the expression of a modified lacZ gene in Escherichia coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Missense misreading of asparagine codons as a function of codon identity and context

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Posttranscriptional regulatory mechanisms in Escherichia coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Selection of the mRNA translation initiation region by Escherichia coli ribosomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Biological activity of transcripts synthesized in vitro from full-length and mutated DNA copies of tobacco rattle virus RNA 2.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Effect of nucleotide sequences directly downstream from the AUG on the expression of bovine somatotropin in E. coli.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

The effect of Escherichia coli ribosomal protein S1 on the translational specificity of bacterial ribosomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Expression of the rat interferon-alpha 1 gene in Escherichia coli controlled by the secondary structure of the translation-initiation region

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Improved predictions of secondary structures for RNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

What constitutes the signal for the initiation of protein synthesis on Escherichia coli mRNAs?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Improved free-energy parameters for predictions of RNA duplex stability

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Secondary structure of the central region of bacteriophage MS2 RNA. Conservation and biological significance

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Control of prokaryotic translational initiation by mRNA secondary structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Nucleotide sequence of the trpC-trpB intercistronic region from Salmonella typhimurium

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Construction and characterization of a plasmid containing a nearly full-size DNA copy of bacteriophage MS2 RNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Initial rate kinetic analysis of the mechanism of initiation complex formation and the role of initiation factor IF-3

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

A role for mRNA secondary structure in the control of translation initiation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=54809

Secondary structure of mRNA and efficiency of translation initiation

29 October 2018

1 reference

12 December 2020

Differential translation efficiency explains discoordinate expression of the galactose operon

1 reference

12 December 2020

lacZ translation initiation mutations

1 reference

12 December 2020

Lysis gene of bacteriophage MS2 is activated by translation termination at the overlapping coat gene

1 reference

12 December 2020

Polypeptide elongation and tRNA cycling in Escherichia coli: a dynamic approach

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.87.19.7668

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29 July 2017

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29 July 2017

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