(Q33786657)

29 July 2017

title

Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains (English)

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29 July 2017

J Smith

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29 July 2017

M Bibikova

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29 July 2017

F G Whitby

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29 July 2017

A R Reddy

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29 July 2017

S Chandrasegaran

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29 July 2017

D Carroll

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29 July 2017

language of work or name

English

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publication date

1 September 2000

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29 July 2017

published in

Nucleic Acids Research

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

3361-3369

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Chimeric restriction enzymes: what is next?

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

A detailed study of the substrate specificity of a chimeric restriction enzyme.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

REBASE-restriction enzymes and methylases

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

FokI dimerization is required for DNA cleavage

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Structure of FokI has implications for DNA cleavage

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Chimeric restriction enzyme: Gal4 fusion to FokI cleavage domain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Getting a handhold on DNA: design of poly-zinc finger proteins with femtomolar dissociation constants.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Targeting a truncated Ho-endonuclease of yeast to novel DNA sites with foreign zinc fingers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Construction of a Z-DNA-specific restriction endonuclease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Homing endonucleases: keeping the house in order

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Structure of the multimodular endonuclease FokI bound to DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Design of polydactyl zinc-finger proteins for unique addressing within complex genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

A 2.2 A resolution crystal structure of a designed zinc finger protein bound to DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Splase: a new class IIS zinc-finger restriction endonuclease with specificity for Sp1 binding sites.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Structural requirements for FokI-DNA interaction and oligodeoxyribonucleotide-instructed cleavage

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

In vitro selection of zinc fingers with altered DNA-binding specificity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Chimeric restriction endonuclease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Building zinc fingers by selection: toward a therapeutic application

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

EcoRII can be activated to cleave refractory DNA recognition sites

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

DNA and spermidine provide a switch mechanism to regulate the activity of restriction enzyme Nae I.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Degradation of linear DNA by a strand-specific exonuclease activity in Xenopus laevis oocytes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial species

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Toward rules relating zinc finger protein sequences and DNA binding site preferences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

A new method for sequencing DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI).

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110700

Atypical DNA-binding properties of class-IIS restriction endonucleases: evidence for recognition of the cognate sequence by a FokI monomer

30 October 2018

1 reference

12 December 2020

Specific DNA-RNA hybrid binding by zinc finger proteins

1 reference

12 December 2020

The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence

1 reference

12 December 2020

The galvanization of biology: a growing appreciation for the roles of zinc

1 reference

12 December 2020

Site-specific cleavage of DNA–RNA hybrids by zinc finger/FokI cleavage domain fusions

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/28.17.3361

1 reference

29 July 2017

1 reference

29 July 2017

1 reference