(Q33713679)

28 July 2017

title

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A (English)

1 reference

DOI

https://api.crossref.org/works/10.1073/PNAS.2335541100

3 April 2024

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14623983

3 April 2024

José N Onuchic

1 reference

28 July 2017

Angel E García

1 reference

28 July 2017

José N. Onuchic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14623983

3 April 2024

language of work or name

English

0 references

publication date

17 November 2003

1 reference

full work available at URL

28 July 2017

1 reference

inferred from page(s)

https://europepmc.org/articles/pmc283518?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14623983

https://europepmc.org/articles/PMC283518

3 April 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14623983

https://europepmc.org/articles/PMC283518?pdf=render

3 April 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14623983

https://doi.org/10.1073/pnas.2335541100

3 April 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14623983

https://pnas.org/doi/pdf/10.1073/pnas.2335541100

3 April 2024

1 reference

DOI

https://api.crossref.org/works/10.1073/PNAS.2335541100

Proceedings of the National Academy of Sciences of the United States of America

3 April 2024

published in

1 reference

28 July 2017

volume

100

1 reference

28 July 2017

1 reference

28 July 2017

page(s)

13898-13903

1 reference

The complete folding pathway of a protein from nanoseconds to microseconds

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Probing the folding free energy landscape of the Src-SH3 protein domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Absolute comparison of simulated and experimental protein-folding dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

An atomically detailed study of the folding pathways of protein A with the stochastic difference equation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Simulations of beta-hairpin folding confined to spherical pores using distributed computing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Drying-induced hydrophobic polymer collapse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

An information theory model of hydrophobic interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Characterisation of the transition states for protein folding: towards a new level of mechanistic detail in protein engineering analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Measuring the rate of intramolecular contact formation in polypeptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Pressure-induced protein-folding/unfolding kinetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

High populations of non-native structures in the denatured state are compatible with the formation of the native folded state

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Molecular picture of folding of a small alpha/beta protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Folding dynamics and mechanism of beta-hairpin formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Theory of protein folding: the energy landscape perspective

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Exploring the folding free energy surface of a three-helix bundle protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Absence of a stable intermediate on the folding pathway of protein A.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Fast events in protein folding: helix melting and formation in a small peptide.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Toward an outline of the topography of a realistic protein-folding funnel

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

The nature of protein folding pathways: the classical versus the new view

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Spin glasses and the statistical mechanics of protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Mapping the transition state and pathway of protein folding by protein engineering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Protein folding funnels: a kinetic approach to the sequence-structure relationship

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283518

Replica-exchange molecular dynamics method for protein folding

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

A breakdown of symmetry in the folding transition state of protein L

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

Computer simulation of aqueous Na-Cl electrolytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

Origin of Entropy Convergence in Hydrophobic Hydration and Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

New perspectives on hydrophobic effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

First-principles calculation of the folding free energy of a three-helix bundle protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2335541100

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.2335541100

3 April 2024

Identifiers

DOI

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference