(Q28271509)

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An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure

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title

An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure (English)

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main subject

protein function prediction

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protein structure prediction

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Timothy A Robertson

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language of work or name

English

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publication date

1 February 2007

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359-74

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cites work

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKG680

Native protein sequences are close to optimal for their structures

1 reference

9 October 2024

https://opencitations.net/index/api/v1/citations/10.1073/PNAS.97.19.10383

Protein-DNA binding specificity predictions with structural models

1 reference

9 October 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKI875

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes

1 reference

9 October 2024

https://opencitations.net/index/api/v1/citations/10.1016/S0022-2836(03)00021-4

A simple physical model for the prediction and design of protein-DNA interactions

1 reference

9 October 2024

https://opencitations.net/index/api/v1/citations/10.1016/J.JMB.2004.09.029

A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

1 reference

9 October 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKH785

Identifiers

DOI

10.1002/PROT.21162

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stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1121460

OpenCitations bibliographic resource ID

1121460

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stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1121460

PubMed publication ID

17078093

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stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1121460

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